Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006068

Physical Location & Seq

Genomic Coordinates Forward (+)

22312976 .. 22314119

Gene Structure 1144 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G54970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGAAGGATATCTCTAAATCTCCGGCGAGAAGAAGCGACGGATTCCACCGCTACTTAAAACCAGGAGCGCTTGCTCAGATCCGAAACTCGAGAATCAACGCTAGATCTACTACATCTCTCGTATCTCGCTCCTCCCTCTCGCAGCTAGTAGATCCGATTTCACCATCTGAGAACTCGGTTGATGAAGCAGCAGCGGCTTCGCGGAATCTGACGATAGATCAGGTACCACATCTTCTAAGAAAGATCTATGGTCCTTACAGTTATCAGAGGAAGAAATTAGCCGCTGCTAGATCTGTCTCGTCGATGATGATGATGAATATCAATCCTCCTATAAACTCAGTTCTTGTTGAACCCAGTAGTGATGTTATTGCTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

125

Amino Acids

13.73

Weight (kDa)

10.32

Isoelectric Point (pI)

54.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26960 AT5G54970
fragaria_vesca	FvH4_3g02050 FvH4_6g43180
malus_domestica	MD09G1108900.v1.1 MD17G1096900.v1.1
prunus_persica	Prupe.3G217200_v2.0.a1
pyrus_communis	pycom09g03130 pycom17g09270
rosa_chinensis	RchiOBHm_Chr2g0159281 RchiOBHm_Chr5g0002951
rosa_laevigata	RLG00000021150 RLG00000031073 RLG00000035773
rosa_multiflora	Rmu_co8060000.1_g000001 Rmu_sc0010590.1_g000004 Rmu_sc0016200.1_g000008
rosa_roxburghii	Rroxscaffold_3G00269970
rosa_rugosa	Rorug04G0400800
rosa_samantha	Rh2AG542000 Rh2BG554600 Rh2CG524700 Rh5AG023800 Rh5CG026600 Rh5DG025100
rosa_wichuraiana	Rw2G044830 Rw5G002250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	223
AccB1I	GGYRCC	1 cut(s)	223
AccII	CGCG	1 cut(s)	202
AciI	CCGC	4 cut(s)	49, 194, 202, 282
AclWI	GGATC	2 cut(s)	73, 146
AfaI	GTAC	1 cut(s)	225
AfeI	AGCGCT	1 cut(s)	69
AgsI	TTSAA	1 cut(s)	350
AjnI	CCWGG	1 cut(s)	61
AluBI	AGCT	1 cut(s)	145
AluI	AGCT	1 cut(s)	145
Alw26I	GTCTC	1 cut(s)	301
AlwI	GGATC	2 cut(s)	73, 146
Ama87I	CYCGRG	1 cut(s)	88
Aor51HI	AGCGCT	1 cut(s)	69
ApeKI	GCWGC	4 cut(s)	142, 188, 191, 284
Asp718I	GGTACC	1 cut(s)	223
AspLEI	GCGC	1 cut(s)	70
AspS9I	GGNCC	1 cut(s)	251
AsuHPI	GGTGA	1 cut(s)	153
AvaI	CYCGRG	1 cut(s)	88
AvaII	GGWCC	1 cut(s)	251
BanI	GGYRCC	1 cut(s)	223
BarI	GAAGNNNNNNTAC	2 cut(s)	216, 248
BbvI	GCAGC	4 cut(s)	154, 200, 203, 271
BccI	CCATC	1 cut(s)	172
BcgI	CGANNNNNNTGC	2 cut(s)	180, 214
BciT130I	CCWGG	1 cut(s)	63
BcoDI	GTCTC	1 cut(s)	301
BfaI	CTAG	3 cut(s)	102, 146, 288
BfoI	RGCGCY	1 cut(s)	71
BglII	AGATCT	3 cut(s)	104, 243, 290
BisI	GCNGC	6 cut(s)	143, 189, 192, 195, 282, 285
BlsI	GCNGC	6 cut(s)	144, 190, 193, 196, 283, 286
Bme1390I	CCNGG	1 cut(s)	63
Bme18I	GGWCC	1 cut(s)	251
BmeT110I	CYCGRG	1 cut(s)	88
BmgT120I	GGNCC	1 cut(s)	251
BmiI	GGNNCC	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	63
BmrI	ACTGGG	1 cut(s)	348
BmuI	ACTGGG	1 cut(s)	348
BsaBI	GATNNNNATC	1 cut(s)	317
Bse1I	ACTGG	1 cut(s)	354
Bse8I	GATNNNNATC	1 cut(s)	317
BseBI	CCWGG	1 cut(s)	63
BseJI	GATNNNNATC	1 cut(s)	317
BseMII	CTCAG	3 cut(s)	89, 159, 351
BseNI	ACTGG	1 cut(s)	354
BseRI	GAGGAG	1 cut(s)	121
BseXI	GCAGC	4 cut(s)	154, 200, 203, 271
Bsh1236I	CGCG	1 cut(s)	202
BshNI	GGYRCC	1 cut(s)	223
BsiHKCI	CYCGRG	1 cut(s)	88
BsiSI	CCGG	1 cut(s)	23
BsmAI	GTCTC	1 cut(s)	301
BsoBI	CYCGRG	1 cut(s)	88
Bsp143I	GATC	6 cut(s)	78, 104, 151, 217, 243, 290
BspACI	CCGC	4 cut(s)	49, 194, 202, 282
BspCNI	CTCAG	3 cut(s)	88, 160, 350
BspFNI	CGCG	1 cut(s)	202
BspLI	GGNNCC	1 cut(s)	225
BspPI	GGATC	2 cut(s)	73, 146
BspT107I	GGYRCC	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	354
BssMI	GATC	6 cut(s)	78, 104, 151, 217, 243, 290
Bst2UI	CCWGG	1 cut(s)	63
Bst4CI	ACNGT	1 cut(s)	260
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	4 cut(s)	75, 168, 236, 337
BstFNI	CGCG	1 cut(s)	202
BstH2I	RGCGCY	1 cut(s)	71
BstHHI	GCGC	1 cut(s)	70
BstKTI	GATC	6 cut(s)	81, 107, 154, 220, 246, 293
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	6 cut(s)	78, 104, 151, 217, 243, 290
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNI	CCWGG	1 cut(s)	63
BstSCI	CCNGG	1 cut(s)	61
BstUI	CGCG	1 cut(s)	202
BstV1I	GCAGC	4 cut(s)	154, 200, 203, 271
BstX2I	RGATCY	5 cut(s)	78, 104, 151, 243, 290
BstYI	RGATCY	5 cut(s)	78, 104, 151, 243, 290
Cac8I	GCNNGC	1 cut(s)	72
CfoI	GCGC	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	251
Csp6I	GTAC	1 cut(s)	224
CviJI	RGCY	3 cut(s)	145, 197, 281
CviKI_1	RGCY	3 cut(s)	145, 197, 281
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	4 cut(s)	75, 168, 236, 337
DpnI	GATC	6 cut(s)	80, 106, 153, 219, 245, 292
DpnII	GATC	6 cut(s)	78, 104, 151, 217, 243, 290
Eco32I	GATATC	1 cut(s)	10
Eco47I	GGWCC	1 cut(s)	251
Eco47III	AGCGCT	1 cut(s)	69
Eco88I	CYCGRG	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	61
EcoRV	GATATC	1 cut(s)	10
FaiI	YATR	2 cut(s)	249, 332
Fnu4HI	GCNGC	6 cut(s)	143, 189, 192, 195, 282, 285
Fsp4HI	GCNGC	6 cut(s)	143, 189, 192, 195, 282, 285
FspBI	CTAG	3 cut(s)	102, 146, 288
GlaI	GCGC	1 cut(s)	69
GluI	GCNGC	6 cut(s)	143, 189, 192, 195, 282, 285
HaeII	RGCGCY	1 cut(s)	71
HapII	CCGG	1 cut(s)	23
HhaI	GCGC	1 cut(s)	70
Hin6I	GCGC	1 cut(s)	68
HinP1I	GCGC	1 cut(s)	68
HinfI	GANTC	3 cut(s)	42, 93, 205
HpaII	CCGG	1 cut(s)	23
HphI	GGTGA	1 cut(s)	153
Hpy188I	TCNGA	6 cut(s)	78, 83, 156, 169, 210, 267
Hpy188III	TCNNGA	1 cut(s)	90
Hpy99I	CGWCG	2 cut(s)	41, 304
HpyCH4III	ACNGT	1 cut(s)	260
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
HpyF3I	CTNAG	4 cut(s)	75, 168, 236, 337
HspAI	GCGC	1 cut(s)	68
KpnI	GGTACC	1 cut(s)	227
Kzo9I	GATC	6 cut(s)	78, 104, 151, 217, 243, 290
LmnI	GCTCC	2 cut(s)	65, 134
LpnPI	CCDG	5 cut(s)	36, 48, 75, 206, 367
Lsp1109I	GCAGC	4 cut(s)	154, 200, 203, 271
MaeI	CTAG	3 cut(s)	102, 146, 288
MalI	GATC	6 cut(s)	80, 106, 153, 219, 245, 292
MboI	GATC	6 cut(s)	78, 104, 151, 217, 243, 290
MboII	GAAGA	3 cut(s)	42, 224, 283
MflI	RGATCY	5 cut(s)	78, 104, 151, 243, 290
MluCI	AATT	1 cut(s)	275
MnlI	CCTC	4 cut(s)	142, 146, 261, 336
MseI	TTAA	1 cut(s)	56
MspA1I	CMGCKG	2 cut(s)	194, 284
MspI	CCGG	1 cut(s)	23
MspR9I	CCNGG	1 cut(s)	63
MvaI	CCWGG	1 cut(s)	63
MvnI	CGCG	1 cut(s)	202
MwoI	GCNNNNNNNGC	1 cut(s)	194
NdeII	GATC	6 cut(s)	78, 104, 151, 217, 243, 290
NlaIV	GGNNCC	1 cut(s)	225
PaeR7I	CTCGAG	1 cut(s)	88
PfeI	GAWTC	3 cut(s)	42, 93, 205
PkrI	GCNGC	6 cut(s)	144, 190, 193, 196, 283, 286
Psp6I	CCWGG	1 cut(s)	61
PspGI	CCWGG	1 cut(s)	61
PspN4I	GGNNCC	1 cut(s)	225
PspPI	GGNCC	1 cut(s)	251
PsuI	RGATCY	5 cut(s)	78, 104, 151, 243, 290
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	56
SatI	GCNGC	6 cut(s)	143, 189, 192, 195, 282, 285
Sau3AI	GATC	6 cut(s)	78, 104, 151, 217, 243, 290
Sau96I	GGNCC	1 cut(s)	251
ScrFI	CCNGG	1 cut(s)	63
SetI	ASST	2 cut(s)	147, 225
Sfr274I	CTCGAG	1 cut(s)	88
SinI	GGWCC	1 cut(s)	251
SlaI	CTCGAG	1 cut(s)	88
SmlI	CTYRAG	1 cut(s)	88
SmoI	CTYRAG	1 cut(s)	88
Sse9I	AATT	1 cut(s)	275
SsiI	CCGC	4 cut(s)	49, 194, 202, 282
SspMI	CTAG	3 cut(s)	102, 146, 288
StyD4I	CCNGG	1 cut(s)	61
TaaI	ACNGT	1 cut(s)	260
TaqI	TCGA	2 cut(s)	89, 302
TasI	AATT	1 cut(s)	275
TauI	GCSGC	2 cut(s)	197, 284
TfiI	GAWTC	3 cut(s)	42, 93, 205
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TseI	GCWGC	4 cut(s)	142, 188, 191, 284
TspDTI	ATGAA	3 cut(s)	17, 198, 329
TspGWI	ACGGA	1 cut(s)	54
VpaK11BI	GGWCC	1 cut(s)	251
XhoI	CTCGAG	1 cut(s)	88
XspI	CTAG	3 cut(s)	102, 146, 288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.