FvH4_3g02050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0006068
Physical Location & Seq
Forward (+)
1032973 .. 1033354
382 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g02050.t1

Sequence Viewer

Length: 357 bp
ATGAAGCAAAGGCTTGGAACTGGAAATGGAGGCTCTACATCTTCACCAACAAAGAGAACACATGAAGGGTTTCACAAGTACCTAAGGCCAGGGACACTTGCCCAACTTAGGGACTTGAAAATCACCGCAAGAAGATCTCAGAGACTGCAATATGGTGACCACAAAACTCGAATCTCTCTCTACCAACTTCTTCTGAGTTCAATGTCCTCATCGTCGTTGGACGCCGGAGACGATATTGCACACCAAAGTCATGAAGAAATCCCTTACTTTCCTCATGCAACAGTTCTCAACCGCCCTCGGTGTCTACAACGAAAGAAACTCGTAGCACTTGCACCTGTTCTTTCGGATAGTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.21

Weight (kDa)

10.22

Isoelectric Point (pI)

64.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 304
AciI CCGC 2 cut(s) 126, 292
AcyI GRCGYC 1 cut(s) 222
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 2 cut(s) 108, 109
AgsI TTSAA 2 cut(s) 118, 201
AjnI CCWGG 1 cut(s) 88
Alw26I GTCTC 2 cut(s) 136, 222
AlwNI CAGNNNCTG 1 cut(s) 145
AoxI GGCC 1 cut(s) 86
Asp700I GAANNNNTTC 1 cut(s) 69
AsuHPI GGTGA 3 cut(s) 36, 115, 167
AxyI CCTNAGG 1 cut(s) 83
BciT130I CCWGG 1 cut(s) 90
BcoDI GTCTC 2 cut(s) 136, 222
BglII AGATCT 1 cut(s) 134
Bme1390I CCNGG 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 90
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 89, 296
Bsc4I CCNNNNNNNGG 2 cut(s) 108, 109
Bse1I ACTGG 1 cut(s) 25
Bse21I CCTNAGG 1 cut(s) 83
BseBI CCWGG 1 cut(s) 90
BseDI CCNNGG 2 cut(s) 89, 296
BseLI CCNNNNNNNGG 2 cut(s) 108, 109
BseMII CTCAG 2 cut(s) 152, 185
BseNI ACTGG 1 cut(s) 25
BshFI GGCC 1 cut(s) 88
BsiSI CCGG 1 cut(s) 225
BslFI GGGAC 2 cut(s) 106, 125
BslI CCNNNNNNNGG 2 cut(s) 108, 109
BsmAI GTCTC 2 cut(s) 136, 222
BsmBI CGTCTC 1 cut(s) 222
BsmFI GGGAC 2 cut(s) 106, 125
BsnI GGCC 1 cut(s) 88
Bsp143I GATC 1 cut(s) 134
BspACI CCGC 2 cut(s) 126, 292
BspANI GGCC 1 cut(s) 88
BspCNI CTCAG 2 cut(s) 151, 186
BspHI TCATGA 1 cut(s) 250
BsrI ACTGG 1 cut(s) 25
BssECI CCNNGG 2 cut(s) 89, 296
BssMI GATC 1 cut(s) 134
BssNI GRCGYC 1 cut(s) 222
Bst2UI CCWGG 1 cut(s) 90
Bst4CI ACNGT 1 cut(s) 283
BstACI GRCGYC 1 cut(s) 222
BstDEI CTNAG 4 cut(s) 83, 107, 138, 194
BstEII GGTNACC 1 cut(s) 155
BstKTI GATC 1 cut(s) 137
BstMAI GTCTC 2 cut(s) 136, 222
BstMBI GATC 1 cut(s) 134
BstNI CCWGG 1 cut(s) 90
BstPI GGTNACC 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 88
BstX2I RGATCY 1 cut(s) 134
BstYI RGATCY 1 cut(s) 134
Bsu36I CCTNAGG 1 cut(s) 83
BsuRI GGCC 1 cut(s) 88
CaiI CAGNNNCTG 1 cut(s) 145
CciI TCATGA 1 cut(s) 250
CseI GACGC 1 cut(s) 230
Csp6I GTAC 1 cut(s) 79
CviAII CATG 3 cut(s) 62, 251, 275
CviJI RGCY 3 cut(s) 13, 33, 88
CviKI_1 RGCY 3 cut(s) 13, 33, 88
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 4 cut(s) 83, 107, 138, 194
DpnI GATC 1 cut(s) 136
DpnII GATC 1 cut(s) 134
Eco81I CCTNAGG 1 cut(s) 83
Eco91I GGTNACC 1 cut(s) 155
EcoO65I GGTNACC 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 88
Esp3I CGTCTC 1 cut(s) 222
FaeI CATG 3 cut(s) 65, 254, 278
FaiI YATR 5 cut(s) 63, 153, 252, 276, 355
FaqI GGGAC 2 cut(s) 106, 125
FatI CATG 3 cut(s) 61, 250, 274
FblI GTMKAC 1 cut(s) 304
HaeIII GGCC 1 cut(s) 88
HapII CCGG 1 cut(s) 225
HgaI GACGC 1 cut(s) 230
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 3 cut(s) 65, 254, 278
HinfI GANTC 1 cut(s) 171
HpaII CCGG 1 cut(s) 225
HphI GGTGA 3 cut(s) 36, 115, 167
Hpy166II GTNNAC 1 cut(s) 305
Hpy188I TCNGA 3 cut(s) 141, 195, 346
Hpy188III TCNNGA 1 cut(s) 251
Hpy8I GTNNAC 1 cut(s) 305
Hpy99I CGWCG 1 cut(s) 217
HpyAV CCTTC 1 cut(s) 59
HpyCH4III ACNGT 1 cut(s) 283
HpyCH4V TGCA 4 cut(s) 148, 239, 278, 332
HpyF3I CTNAG 4 cut(s) 83, 107, 138, 194
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 3 cut(s) 65, 254, 278
Kzo9I GATC 1 cut(s) 134
LpnPI CCDG 5 cut(s) 6, 75, 102, 238, 348
MaeIII GTNAC 1 cut(s) 155
MalI GATC 1 cut(s) 136
MboI GATC 1 cut(s) 134
MboII GAAGA 4 cut(s) 33, 144, 182, 266
MflI RGATCY 1 cut(s) 134
MmeI TCCRAC 1 cut(s) 198
MnlI CCTC 4 cut(s) 23, 217, 282, 306
MroXI GAANNNNTTC 1 cut(s) 69
MspI CCGG 1 cut(s) 225
MspR9I CCNGG 1 cut(s) 90
MvaI CCWGG 1 cut(s) 90
NdeII GATC 1 cut(s) 134
NlaIII CATG 3 cut(s) 65, 254, 278
NmuCI GTSAC 1 cut(s) 155
PagI TCATGA 1 cut(s) 250
PcsI WCGNNNNNNNCGW 1 cut(s) 228
PdmI GAANNNNTTC 1 cut(s) 69
PfeI GAWTC 1 cut(s) 171
Psp6I CCWGG 1 cut(s) 88
PspEI GGTNACC 1 cut(s) 155
PspGI CCWGG 1 cut(s) 88
PstNI CAGNNNCTG 1 cut(s) 145
PsuI RGATCY 1 cut(s) 134
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
Sau3AI GATC 1 cut(s) 134
ScrFI CCNGG 1 cut(s) 90
SetI ASST 2 cut(s) 84, 337
SsiI CCGC 2 cut(s) 126, 292
StyD4I CCNGG 1 cut(s) 88
TaaI ACNGT 1 cut(s) 283
TaqI TCGA 1 cut(s) 169
TfiI GAWTC 1 cut(s) 171
TseFI GTSAC 1 cut(s) 155
Tsp45I GTSAC 1 cut(s) 155
TspDTI ATGAA 3 cut(s) 17, 78, 267
XmiI GTMKAC 1 cut(s) 304
XmnI GAANNNNTTC 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.