Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0006068

Physical Location & Seq

Genomic Coordinates Reverse (-)

72354160 .. 72354923

Gene Structure 764 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021150

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAACCGCCGTGCACGAACCACCCACCGGTCCTCACCCAACCGGTCCGAGCCGTTCCTCAAGTACCTTAAGCCCGGAGCCCTAGCCCAAATCCGAGACTCACGAATCAGCAGCTCCAGATCTCACAGAATCAACTGGATCTCCCAGATCCGTTCGACTCCGCCGTTGTCTCCCTCCGCCGACTCCGGTCTCCCACATATCACAGTCGCCGCCGCCGATGGATTCCCTTGCTTCTCCGGCAGGATCTACGGCCCGAGGTGCCCCCAGAGAAAGAAGCTCGTGGCGGGAAAGTCTGTGATGTTCCTCAGGCCGTCGAGTCCGGTATCCGACTCGCCCGATCCGATAATCGATCTTTTTAGTAGTGACATTCTTGCTGCACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

13.96

Weight (kDa)

11.09

Isoelectric Point (pI)

74.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26960 AT5G54970
fragaria_vesca	FvH4_3g02050 FvH4_6g43180
malus_domestica	MD09G1108900.v1.1 MD17G1096900.v1.1
prunus_persica	Prupe.3G217200_v2.0.a1
pyrus_communis	pycom09g03130 pycom17g09270
rosa_chinensis	RchiOBHm_Chr2g0159281 RchiOBHm_Chr5g0002951
rosa_laevigata	RLG00000021150 RLG00000031073 RLG00000035773
rosa_multiflora	Rmu_co8060000.1_g000001 Rmu_sc0010590.1_g000004 Rmu_sc0016200.1_g000008
rosa_roxburghii	Rroxscaffold_3G00269970
rosa_rugosa	Rorug04G0400800
rosa_samantha	Rh2AG542000 Rh2BG554600 Rh2CG524700 Rh5AG023800 Rh5CG026600 Rh5DG025100
rosa_wichuraiana	Rw2G044830 Rw5G002250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	258
AciI	CCGC	6 cut(s)	7, 161, 177, 210, 213, 284
AclWI	GGATC	4 cut(s)	142, 146, 251, 332
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	27
AflII	CTTAAG	1 cut(s)	68
AgeI	ACCGGT	2 cut(s)	27, 42
AluBI	AGCT	2 cut(s)	114, 277
AluI	AGCT	2 cut(s)	114, 277
Alw21I	GWGCWC	1 cut(s)	16
Alw26I	GTCTC	3 cut(s)	90, 174, 194
Alw44I	GTGCAC	1 cut(s)	12
AlwI	GGATC	4 cut(s)	142, 146, 251, 332
Ama87I	CYCGRG	1 cut(s)	253
AoxI	GGCC	2 cut(s)	250, 308
ApaLI	GTGCAC	1 cut(s)	12
ApeKI	GCWGC	2 cut(s)	111, 374
AsiGI	ACCGGT	2 cut(s)	27, 42
AspS9I	GGNCC	3 cut(s)	30, 45, 251
AsuC2I	CCSGG	1 cut(s)	75
AsuHPI	GGTGA	1 cut(s)	27
AvaI	CYCGRG	1 cut(s)	253
AvaII	GGWCC	2 cut(s)	30, 45
AxyI	CCTNAGG	1 cut(s)	305
BaeGI	GKGCMC	2 cut(s)	16, 263
BanI	GGYRCC	1 cut(s)	258
BanII	GRGCYC	1 cut(s)	82
BauI	CACGAG	1 cut(s)	278
Bbv12I	GWGCWC	1 cut(s)	16
BbvI	GCAGC	2 cut(s)	123, 361
BccI	CCATC	1 cut(s)	212
BceAI	ACGGC	4 cut(s)	37, 148, 265, 295
BciVI	GTATCC	1 cut(s)	334
BcnI	CCSGG	1 cut(s)	75
BcoDI	GTCTC	3 cut(s)	90, 174, 194
BfaI	CTAG	1 cut(s)	83
BfrI	CTTAAG	1 cut(s)	68
BfuI	GTATCC	1 cut(s)	334
BglII	AGATCT	1 cut(s)	119
BisI	GCNGC	4 cut(s)	112, 210, 213, 375
BlsI	GCNGC	4 cut(s)	113, 211, 214, 376
Bme1390I	CCNGG	1 cut(s)	75
Bme18I	GGWCC	2 cut(s)	30, 45
BmeT110I	CYCGRG	1 cut(s)	253
BmgT120I	GGNCC	3 cut(s)	30, 45, 251
BmiI	GGNNCC	2 cut(s)	79, 260
BmrFI	CCNGG	1 cut(s)	75
BoxI	GACNNNNGTC	1 cut(s)	186
BpmI	CTGGAG	1 cut(s)	100
BpuEI	CTTGAG	1 cut(s)	44
BpuMI	CCSGG	1 cut(s)	75
Bsa29I	ATCGAT	1 cut(s)	348
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	254
BsaWI	WCCGGW	4 cut(s)	27, 42, 185, 319
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse118I	RCCGGY	2 cut(s)	27, 42
Bse1I	ACTGG	1 cut(s)	140
Bse21I	CCTNAGG	1 cut(s)	305
BseCI	ATCGAT	1 cut(s)	348
BseDI	CCNNGG	1 cut(s)	254
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	319
BseNI	ACTGG	1 cut(s)	140
BseSI	GKGCMC	2 cut(s)	16, 263
BseXI	GCAGC	2 cut(s)	123, 361
BsgI	GTGCAG	1 cut(s)	360
BshFI	GGCC	2 cut(s)	252, 310
BshNI	GGYRCC	1 cut(s)	258
BshTI	ACCGGT	2 cut(s)	27, 42
BshVI	ATCGAT	1 cut(s)	348
BsiHKAI	GWGCWC	1 cut(s)	16
BsiHKCI	CYCGRG	1 cut(s)	253
BsiSI	CCGG	6 cut(s)	28, 43, 75, 186, 237, 320
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmAI	GTCTC	3 cut(s)	90, 174, 194
BsnI	GGCC	2 cut(s)	252, 310
Bso31I	GGTCTC	1 cut(s)	194
BsoBI	CYCGRG	1 cut(s)	253
Bsp1286I	GDGCHC	3 cut(s)	16, 82, 263
Bsp143I	GATC	6 cut(s)	119, 138, 147, 243, 337, 349
BspACI	CCGC	6 cut(s)	7, 161, 177, 210, 213, 284
BspANI	GGCC	2 cut(s)	252, 310
BspCNI	CTCAG	1 cut(s)	318
BspDI	ATCGAT	1 cut(s)	348
BspLI	GGNNCC	2 cut(s)	79, 260
BspPI	GGATC	4 cut(s)	142, 146, 251, 332
BspT107I	GGYRCC	1 cut(s)	258
BspTI	CTTAAG	1 cut(s)	68
BspTNI	GGTCTC	1 cut(s)	194
BsrFI	RCCGGY	2 cut(s)	27, 42
BsrI	ACTGG	1 cut(s)	140
BssAI	RCCGGY	2 cut(s)	27, 42
BssECI	CCNNGG	1 cut(s)	254
BssMI	GATC	6 cut(s)	119, 138, 147, 243, 337, 349
BssSI	CACGAG	1 cut(s)	278
Bst2BI	CACGAG	1 cut(s)	278
Bst4CI	ACNGT	1 cut(s)	205
BstAFI	CTTAAG	1 cut(s)	68
BstDEI	CTNAG	1 cut(s)	305
BstKTI	GATC	6 cut(s)	122, 141, 150, 246, 340, 352
BstMAI	GTCTC	3 cut(s)	90, 174, 194
BstMBI	GATC	6 cut(s)	119, 138, 147, 243, 337, 349
BstMWI	GCNNNNNNNGC	2 cut(s)	237, 258
BstPAI	GACNNNNGTC	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	73
BstSLI	GKGCMC	2 cut(s)	16, 263
BstV1I	GCAGC	2 cut(s)	123, 361
BstX2I	RGATCY	4 cut(s)	119, 138, 147, 243
BstYI	RGATCY	4 cut(s)	119, 138, 147, 243
Bsu15I	ATCGAT	1 cut(s)	348
Bsu36I	CCTNAGG	1 cut(s)	305
BsuI	GTATCC	1 cut(s)	334
BsuRI	GGCC	2 cut(s)	252, 310
BsuTUI	ATCGAT	1 cut(s)	348
Cfr10I	RCCGGY	2 cut(s)	27, 42
Cfr13I	GGNCC	3 cut(s)	30, 45, 251
ClaI	ATCGAT	1 cut(s)	348
CpoI	CGGWCCG	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	64
CspAI	ACCGGT	2 cut(s)	27, 42
CspI	CGGWCCG	1 cut(s)	45
CviJI	RGCY	8 cut(s)	52, 73, 80, 86, 114, 252, 277, 310
CviKI_1	RGCY	8 cut(s)	52, 73, 80, 86, 114, 252, 277, 310
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	1 cut(s)	305
DpnI	GATC	6 cut(s)	121, 140, 149, 245, 339, 351
DpnII	GATC	6 cut(s)	119, 138, 147, 243, 337, 349
EciI	GGCGGA	2 cut(s)	150, 166
Eco24I	GRGCYC	1 cut(s)	82
Eco31I	GGTCTC	1 cut(s)	194
Eco47I	GGWCC	2 cut(s)	30, 45
Eco81I	CCTNAGG	1 cut(s)	305
Eco88I	CYCGRG	1 cut(s)	253
EcoT38I	GRGCYC	1 cut(s)	82
FaiI	YATR	1 cut(s)	198
FauI	CCCGC	1 cut(s)	277
Fnu4HI	GCNGC	4 cut(s)	112, 210, 213, 375
FriOI	GRGCYC	1 cut(s)	82
Fsp4HI	GCNGC	4 cut(s)	112, 210, 213, 375
FspBI	CTAG	1 cut(s)	83
GluI	GCNGC	4 cut(s)	112, 210, 213, 375
GsuI	CTGGAG	1 cut(s)	100
HaeIII	GGCC	2 cut(s)	252, 310
HapII	CCGG	6 cut(s)	28, 43, 75, 186, 237, 320
HinfI	GANTC	8 cut(s)	98, 105, 129, 157, 182, 222, 316, 329
HpaII	CCGG	6 cut(s)	28, 43, 75, 186, 237, 320
HphI	GGTGA	1 cut(s)	27
Hpy166II	GTNNAC	1 cut(s)	14
Hpy188I	TCNGA	4 cut(s)	49, 95, 328, 342
Hpy188III	TCNNGA	2 cut(s)	102, 117
Hpy8I	GTNNAC	1 cut(s)	14
Hpy99I	CGWCG	1 cut(s)	316
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	2 cut(s)	14, 377
HpyF10VI	GCNNNNNNNGC	2 cut(s)	237, 258
HpyF3I	CTNAG	1 cut(s)	305
Kzo9I	GATC	6 cut(s)	119, 138, 147, 243, 337, 349
LmnI	GCTCC	2 cut(s)	77, 119
Lsp1109I	GCAGC	2 cut(s)	123, 361
MaeI	CTAG	1 cut(s)	83
MaeIII	GTNAC	1 cut(s)	362
MalI	GATC	6 cut(s)	121, 140, 149, 245, 339, 351
MboI	GATC	6 cut(s)	119, 138, 147, 243, 337, 349
MflI	RGATCY	4 cut(s)	119, 138, 147, 243
MhlI	GDGCHC	3 cut(s)	16, 82, 263
MlyI	GAGTC	5 cut(s)	92, 151, 176, 323, 325
MmeI	TCCRAC	1 cut(s)	351
MnlI	CCTC	5 cut(s)	43, 68, 184, 249, 314
MseI	TTAA	1 cut(s)	69
MspCI	CTTAAG	1 cut(s)	68
MspI	CCGG	6 cut(s)	28, 43, 75, 186, 237, 320
MspR9I	CCNGG	1 cut(s)	75
MwoI	GCNNNNNNNGC	2 cut(s)	237, 258
NciI	CCSGG	1 cut(s)	75
NdeII	GATC	6 cut(s)	119, 138, 147, 243, 337, 349
NlaIV	GGNNCC	2 cut(s)	79, 260
NmuCI	GTSAC	1 cut(s)	362
PcsI	WCGNNNNNNNCGW	3 cut(s)	161, 213, 338
PfeI	GAWTC	3 cut(s)	105, 129, 222
PinAI	ACCGGT	2 cut(s)	27, 42
PkrI	GCNGC	4 cut(s)	113, 211, 214, 376
PleI	GAGTC	5 cut(s)	92, 151, 176, 323, 324
PpsI	GAGTC	5 cut(s)	92, 151, 176, 323, 324
PshAI	GACNNNNGTC	1 cut(s)	186
PspN4I	GGNNCC	2 cut(s)	79, 260
PspPI	GGNCC	3 cut(s)	30, 45, 251
PsuI	RGATCY	4 cut(s)	119, 138, 147, 243
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
Rsr2I	CGGWCCG	1 cut(s)	45
RsrII	CGGWCCG	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	4 cut(s)	112, 210, 213, 375
Sau3AI	GATC	6 cut(s)	119, 138, 147, 243, 337, 349
Sau96I	GGNCC	3 cut(s)	30, 45, 251
SchI	GAGTC	5 cut(s)	92, 151, 176, 323, 325
ScrFI	CCNGG	1 cut(s)	75
SduI	GDGCHC	3 cut(s)	16, 82, 263
SetI	ASST	4 cut(s)	69, 116, 260, 279
SinI	GGWCC	2 cut(s)	30, 45
SmlI	CTYRAG	2 cut(s)	59, 68
SmoI	CTYRAG	2 cut(s)	59, 68
SsiI	CCGC	6 cut(s)	7, 161, 177, 210, 213, 284
SspMI	CTAG	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	73
TaaI	ACNGT	1 cut(s)	205
TaqI	TCGA	3 cut(s)	155, 314, 348
TauI	GCSGC	2 cut(s)	212, 215
TfiI	GAWTC	3 cut(s)	105, 129, 222
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TseFI	GTSAC	1 cut(s)	362
TseI	GCWGC	2 cut(s)	111, 374
Tsp45I	GTSAC	1 cut(s)	362
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	140
Vha464I	CTTAAG	1 cut(s)	68
VneI	GTGCAC	1 cut(s)	12
VpaK11BI	GGWCC	2 cut(s)	30, 45
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.