Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006068

Physical Location & Seq

Genomic Coordinates Reverse (-)

76995417 .. 76995797

Gene Structure 381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG542000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAACCGCCGTGCACGAACCACCCACCGGTCCTCACCCAACCGGTCCGAGCCGTTCCTCAAGTACCTTAAGCCCGGAGCCCTAGCCCAAATCCGAGACTCGCGAATCAGCAGCTCCAGATCTCACAGAATCAACTGGATCTCCCAGATCCGTTCCACCCCGCCGTTGTCTCCCTCCGCCGACTCCGGTCTCCCACAGATCACCGTCGCCGCCGATGGATTCCCTTGCTTCTCCGGCAGGATCTACGGCCCGAGGTGCCCCCAGAGAAAGAAGCTCGTGGCGGGAAAGTCTGTGATGTTCCTCAGGCCGTCGAGTCCGGTATCCGACTCGCCCGATCCCATAATCGATCTGTTTAGTAGTGACATTCTTGCTGCACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

13.88

Weight (kDa)

11.09

Isoelectric Point (pI)

72.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26960 AT5G54970
fragaria_vesca	FvH4_3g02050 FvH4_6g43180
malus_domestica	MD09G1108900.v1.1 MD17G1096900.v1.1
prunus_persica	Prupe.3G217200_v2.0.a1
pyrus_communis	pycom09g03130 pycom17g09270
rosa_chinensis	RchiOBHm_Chr2g0159281 RchiOBHm_Chr5g0002951
rosa_laevigata	RLG00000021150 RLG00000031073 RLG00000035773
rosa_multiflora	Rmu_co8060000.1_g000001 Rmu_sc0010590.1_g000004 Rmu_sc0016200.1_g000008
rosa_roxburghii	Rroxscaffold_3G00269970
rosa_rugosa	Rorug04G0400800
rosa_samantha	Rh2AG542000 Rh2BG554600 Rh2CG524700 Rh5AG023800 Rh5CG026600 Rh5DG025100
rosa_wichuraiana	Rw2G044830 Rw5G002250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	255
AccII	CGCG	1 cut(s)	103
AciI	CCGC	5 cut(s)	7, 161, 177, 210, 281
AclWI	GGATC	4 cut(s)	142, 146, 248, 329
AfaI	GTAC	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	27
AflII	CTTAAG	1 cut(s)	68
AgeI	ACCGGT	2 cut(s)	27, 42
AluBI	AGCT	2 cut(s)	114, 274
AluI	AGCT	2 cut(s)	114, 274
Alw21I	GWGCWC	1 cut(s)	16
Alw26I	GTCTC	3 cut(s)	90, 174, 194
Alw44I	GTGCAC	1 cut(s)	12
AlwI	GGATC	4 cut(s)	142, 146, 248, 329
Ama87I	CYCGRG	1 cut(s)	250
AoxI	GGCC	2 cut(s)	247, 305
ApaLI	GTGCAC	1 cut(s)	12
ApeKI	GCWGC	2 cut(s)	111, 371
AsiGI	ACCGGT	2 cut(s)	27, 42
AspS9I	GGNCC	3 cut(s)	30, 45, 248
AsuC2I	CCSGG	1 cut(s)	75
AsuHPI	GGTGA	2 cut(s)	27, 193
AvaI	CYCGRG	1 cut(s)	250
AvaII	GGWCC	2 cut(s)	30, 45
AxyI	CCTNAGG	1 cut(s)	302
BaeGI	GKGCMC	2 cut(s)	16, 260
BanI	GGYRCC	1 cut(s)	255
BanII	GRGCYC	1 cut(s)	82
BauI	CACGAG	1 cut(s)	275
Bbv12I	GWGCWC	1 cut(s)	16
BbvI	GCAGC	2 cut(s)	123, 358
BccI	CCATC	1 cut(s)	209
BceAI	ACGGC	4 cut(s)	37, 148, 262, 292
BciVI	GTATCC	1 cut(s)	331
BcnI	CCSGG	1 cut(s)	75
BcoDI	GTCTC	3 cut(s)	90, 174, 194
BfaI	CTAG	1 cut(s)	83
BfrI	CTTAAG	1 cut(s)	68
BfuI	GTATCC	1 cut(s)	331
BglII	AGATCT	1 cut(s)	119
BisI	GCNGC	3 cut(s)	112, 210, 372
BlsI	GCNGC	3 cut(s)	113, 211, 373
Bme1390I	CCNGG	1 cut(s)	75
Bme18I	GGWCC	2 cut(s)	30, 45
BmeT110I	CYCGRG	1 cut(s)	250
BmgT120I	GGNCC	3 cut(s)	30, 45, 248
BmiI	GGNNCC	2 cut(s)	79, 257
BmrFI	CCNGG	1 cut(s)	75
BoxI	GACNNNNGTC	1 cut(s)	186
BpmI	CTGGAG	1 cut(s)	100
BpuEI	CTTGAG	1 cut(s)	44
BpuMI	CCSGG	1 cut(s)	75
Bsa29I	ATCGAT	1 cut(s)	345
BsaI	GGTCTC	1 cut(s)	194
BsaJI	CCNNGG	1 cut(s)	251
BsaWI	WCCGGW	4 cut(s)	27, 42, 185, 316
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bsc4I	CCNNNNNNNGG	1 cut(s)	27
Bse118I	RCCGGY	2 cut(s)	27, 42
Bse1I	ACTGG	1 cut(s)	140
Bse21I	CCTNAGG	1 cut(s)	302
BseCI	ATCGAT	1 cut(s)	345
BseDI	CCNNGG	1 cut(s)	251
BseLI	CCNNNNNNNGG	1 cut(s)	27
BseMII	CTCAG	1 cut(s)	316
BseNI	ACTGG	1 cut(s)	140
BseSI	GKGCMC	2 cut(s)	16, 260
BseXI	GCAGC	2 cut(s)	123, 358
BsgI	GTGCAG	1 cut(s)	357
Bsh1236I	CGCG	1 cut(s)	103
BshFI	GGCC	2 cut(s)	249, 307
BshNI	GGYRCC	1 cut(s)	255
BshTI	ACCGGT	2 cut(s)	27, 42
BshVI	ATCGAT	1 cut(s)	345
BsiHKAI	GWGCWC	1 cut(s)	16
BsiHKCI	CYCGRG	1 cut(s)	250
BsiSI	CCGG	6 cut(s)	28, 43, 75, 186, 234, 317
BslI	CCNNNNNNNGG	1 cut(s)	27
BsmAI	GTCTC	3 cut(s)	90, 174, 194
BsnI	GGCC	2 cut(s)	249, 307
Bso31I	GGTCTC	1 cut(s)	194
BsoBI	CYCGRG	1 cut(s)	250
Bsp1286I	GDGCHC	3 cut(s)	16, 82, 260
Bsp143I	GATC	7 cut(s)	119, 138, 147, 198, 240, 334, 346
Bsp68I	TCGCGA	1 cut(s)	103
BspACI	CCGC	5 cut(s)	7, 161, 177, 210, 281
BspANI	GGCC	2 cut(s)	249, 307
BspCNI	CTCAG	1 cut(s)	315
BspDI	ATCGAT	1 cut(s)	345
BspFNI	CGCG	1 cut(s)	103
BspLI	GGNNCC	2 cut(s)	79, 257
BspPI	GGATC	4 cut(s)	142, 146, 248, 329
BspT107I	GGYRCC	1 cut(s)	255
BspTI	CTTAAG	1 cut(s)	68
BspTNI	GGTCTC	1 cut(s)	194
BsrFI	RCCGGY	2 cut(s)	27, 42
BsrI	ACTGG	1 cut(s)	140
BssAI	RCCGGY	2 cut(s)	27, 42
BssECI	CCNNGG	1 cut(s)	251
BssMI	GATC	7 cut(s)	119, 138, 147, 198, 240, 334, 346
BssSI	CACGAG	1 cut(s)	275
Bst2BI	CACGAG	1 cut(s)	275
Bst4CI	ACNGT	1 cut(s)	205
BstAFI	CTTAAG	1 cut(s)	68
BstDEI	CTNAG	1 cut(s)	302
BstFNI	CGCG	1 cut(s)	103
BstKTI	GATC	7 cut(s)	122, 141, 150, 201, 243, 337, 349
BstMAI	GTCTC	3 cut(s)	90, 174, 194
BstMBI	GATC	7 cut(s)	119, 138, 147, 198, 240, 334, 346
BstMWI	GCNNNNNNNGC	2 cut(s)	234, 255
BstPAI	GACNNNNGTC	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	73
BstSLI	GKGCMC	2 cut(s)	16, 260
BstUI	CGCG	1 cut(s)	103
BstV1I	GCAGC	2 cut(s)	123, 358
BstX2I	RGATCY	4 cut(s)	119, 138, 147, 240
BstYI	RGATCY	4 cut(s)	119, 138, 147, 240
Bsu15I	ATCGAT	1 cut(s)	345
Bsu36I	CCTNAGG	1 cut(s)	302
BsuI	GTATCC	1 cut(s)	331
BsuRI	GGCC	2 cut(s)	249, 307
BsuTUI	ATCGAT	1 cut(s)	345
BtuMI	TCGCGA	1 cut(s)	103
Cfr10I	RCCGGY	2 cut(s)	27, 42
Cfr13I	GGNCC	3 cut(s)	30, 45, 248
ClaI	ATCGAT	1 cut(s)	345
CpoI	CGGWCCG	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	64
CspAI	ACCGGT	2 cut(s)	27, 42
CspI	CGGWCCG	1 cut(s)	45
CviJI	RGCY	8 cut(s)	52, 73, 80, 86, 114, 249, 274, 307
CviKI_1	RGCY	8 cut(s)	52, 73, 80, 86, 114, 249, 274, 307
CviQI	GTAC	1 cut(s)	64
DdeI	CTNAG	1 cut(s)	302
DpnI	GATC	7 cut(s)	121, 140, 149, 200, 242, 336, 348
DpnII	GATC	7 cut(s)	119, 138, 147, 198, 240, 334, 346
EciI	GGCGGA	1 cut(s)	166
Eco24I	GRGCYC	1 cut(s)	82
Eco31I	GGTCTC	1 cut(s)	194
Eco47I	GGWCC	2 cut(s)	30, 45
Eco81I	CCTNAGG	1 cut(s)	302
Eco88I	CYCGRG	1 cut(s)	250
EcoT38I	GRGCYC	1 cut(s)	82
FaiI	YATR	1 cut(s)	341
FauI	CCCGC	2 cut(s)	168, 274
Fnu4HI	GCNGC	3 cut(s)	112, 210, 372
FriOI	GRGCYC	1 cut(s)	82
Fsp4HI	GCNGC	3 cut(s)	112, 210, 372
FspBI	CTAG	1 cut(s)	83
GluI	GCNGC	3 cut(s)	112, 210, 372
GsuI	CTGGAG	1 cut(s)	100
HaeIII	GGCC	2 cut(s)	249, 307
HapII	CCGG	6 cut(s)	28, 43, 75, 186, 234, 317
HinfI	GANTC	7 cut(s)	98, 105, 129, 182, 219, 313, 326
HpaII	CCGG	6 cut(s)	28, 43, 75, 186, 234, 317
HphI	GGTGA	2 cut(s)	27, 193
Hpy166II	GTNNAC	1 cut(s)	14
Hpy188I	TCNGA	3 cut(s)	49, 95, 325
Hpy188III	TCNNGA	2 cut(s)	102, 117
Hpy8I	GTNNAC	1 cut(s)	14
Hpy99I	CGWCG	2 cut(s)	209, 313
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4V	TGCA	2 cut(s)	14, 374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	234, 255
HpyF3I	CTNAG	1 cut(s)	302
Kzo9I	GATC	7 cut(s)	119, 138, 147, 198, 240, 334, 346
LmnI	GCTCC	2 cut(s)	77, 119
Lsp1109I	GCAGC	2 cut(s)	123, 358
MaeI	CTAG	1 cut(s)	83
MaeIII	GTNAC	1 cut(s)	359
MalI	GATC	7 cut(s)	121, 140, 149, 200, 242, 336, 348
MboI	GATC	7 cut(s)	119, 138, 147, 198, 240, 334, 346
MflI	RGATCY	4 cut(s)	119, 138, 147, 240
MhlI	GDGCHC	3 cut(s)	16, 82, 260
MlyI	GAGTC	4 cut(s)	92, 176, 320, 322
MmeI	TCCRAC	1 cut(s)	348
MnlI	CCTC	5 cut(s)	43, 68, 184, 246, 311
MseI	TTAA	1 cut(s)	69
MspCI	CTTAAG	1 cut(s)	68
MspI	CCGG	6 cut(s)	28, 43, 75, 186, 234, 317
MspR9I	CCNGG	1 cut(s)	75
MvnI	CGCG	1 cut(s)	103
MwoI	GCNNNNNNNGC	2 cut(s)	234, 255
NciI	CCSGG	1 cut(s)	75
NdeII	GATC	7 cut(s)	119, 138, 147, 198, 240, 334, 346
NlaIV	GGNNCC	2 cut(s)	79, 257
NmuCI	GTSAC	1 cut(s)	359
NruI	TCGCGA	1 cut(s)	103
PfeI	GAWTC	3 cut(s)	105, 129, 219
PinAI	ACCGGT	2 cut(s)	27, 42
PkrI	GCNGC	3 cut(s)	113, 211, 373
PleI	GAGTC	4 cut(s)	92, 176, 320, 321
PpsI	GAGTC	4 cut(s)	92, 176, 320, 321
PshAI	GACNNNNGTC	1 cut(s)	186
PspN4I	GGNNCC	2 cut(s)	79, 257
PspPI	GGNCC	3 cut(s)	30, 45, 248
PsuI	RGATCY	4 cut(s)	119, 138, 147, 240
RruI	TCGCGA	1 cut(s)	103
RsaI	GTAC	1 cut(s)	65
RsaNI	GTAC	1 cut(s)	64
Rsr2I	CGGWCCG	1 cut(s)	45
RsrII	CGGWCCG	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	3 cut(s)	112, 210, 372
Sau3AI	GATC	7 cut(s)	119, 138, 147, 198, 240, 334, 346
Sau96I	GGNCC	3 cut(s)	30, 45, 248
SchI	GAGTC	4 cut(s)	92, 176, 320, 322
ScrFI	CCNGG	1 cut(s)	75
SduI	GDGCHC	3 cut(s)	16, 82, 260
SetI	ASST	4 cut(s)	69, 116, 257, 276
SinI	GGWCC	2 cut(s)	30, 45
SmlI	CTYRAG	2 cut(s)	59, 68
SmoI	CTYRAG	2 cut(s)	59, 68
SsiI	CCGC	5 cut(s)	7, 161, 177, 210, 281
SspMI	CTAG	1 cut(s)	83
StyD4I	CCNGG	1 cut(s)	73
TaaI	ACNGT	1 cut(s)	205
TaqI	TCGA	2 cut(s)	311, 345
TauI	GCSGC	1 cut(s)	212
TfiI	GAWTC	3 cut(s)	105, 129, 219
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TseFI	GTSAC	1 cut(s)	359
TseI	GCWGC	2 cut(s)	111, 371
Tsp45I	GTSAC	1 cut(s)	359
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	140
Vha464I	CTTAAG	1 cut(s)	68
VneI	GTGCAC	1 cut(s)	12
VpaK11BI	GGWCC	2 cut(s)	30, 45
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.