RLG00000035773

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006068
Physical Location & Seq
Reverse (-)
71418471 .. 71418916
446 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035773

Sequence Viewer

Length: 363 bp
ATGAACCGCCGTGCACGAACCACCCACCAGTCCTTGCCGAACCGAATCAACTGGATCTCCCATATCCGTTCGACTCCACCGTTGTCTCCCTTCGCCGACTCTTGTCTCCCACAGATCACTGTCGCCGCCGACGGATTCCCTTGCTTCTCCCACAAATCGATAGCGACGACATCGTCTCGGCCTTTTAAGGAAACTTCAACCCAGCGACCATCCCGGCGAAATCTTGCCTCTCTCCAATGTCGCCGAACTAGAACTCAGATATGGAACGTCAAACTCGACGAGACCCAGTCGATCCAGTGTGCTATCAAAGCCATCCAAGACGAAAACTCAGACCTTCACCGGCGACAACAACTTCTCCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

13.77

Weight (kDa)

11.04

Isoelectric Point (pI)

78.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 172
AciI CCGC 2 cut(s) 7, 126
AclWI GGATC 2 cut(s) 62, 286
AgsI TTSAA 1 cut(s) 198
Alw21I GWGCWC 1 cut(s) 16
Alw26I GTCTC 4 cut(s) 90, 110, 180, 275
Alw44I GTGCAC 1 cut(s) 12
AlwI GGATC 2 cut(s) 62, 286
AoxI GGCC 1 cut(s) 179
ApaLI GTGCAC 1 cut(s) 12
AsuC2I CCSGG 1 cut(s) 214
AsuHPI GGTGA 1 cut(s) 329
BaeGI GKGCMC 1 cut(s) 16
Bbv12I GWGCWC 1 cut(s) 16
BccI CCATC 2 cut(s) 217, 320
BcnI CCSGG 1 cut(s) 214
BcoDI GTCTC 4 cut(s) 90, 110, 180, 275
BfaI CTAG 1 cut(s) 249
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
Bme1390I CCNGG 1 cut(s) 214
BmrFI CCNGG 1 cut(s) 214
BmrI ACTGGG 1 cut(s) 280
BmuI ACTGGG 1 cut(s) 280
BoxI GACNNNNGTC 1 cut(s) 102
BpuMI CCSGG 1 cut(s) 214
Bsa29I ATCGAT 1 cut(s) 158
BsaI GGTCTC 1 cut(s) 275
BsaXI ACNNNNNCTCC 3 cut(s) 41, 71, 339
Bse118I RCCGGY 1 cut(s) 339
Bse1I ACTGG 4 cut(s) 28, 56, 286, 295
BseCI ATCGAT 1 cut(s) 158
BseGI GGATG 2 cut(s) 209, 312
BseMII CTCAG 2 cut(s) 269, 342
BseNI ACTGG 4 cut(s) 28, 56, 286, 295
BseSI GKGCMC 1 cut(s) 16
BseYI CCCAGC 1 cut(s) 201
BshFI GGCC 1 cut(s) 181
BshVI ATCGAT 1 cut(s) 158
BsiHKAI GWGCWC 1 cut(s) 16
BsiSI CCGG 2 cut(s) 214, 340
BsmAI GTCTC 4 cut(s) 90, 110, 180, 275
BsmBI CGTCTC 1 cut(s) 180
BsnI GGCC 1 cut(s) 181
Bso31I GGTCTC 1 cut(s) 275
Bsp1286I GDGCHC 1 cut(s) 16
Bsp143I GATC 3 cut(s) 54, 114, 291
BspACI CCGC 2 cut(s) 7, 126
BspANI GGCC 1 cut(s) 181
BspCNI CTCAG 2 cut(s) 268, 341
BspDI ATCGAT 1 cut(s) 158
BspPI GGATC 2 cut(s) 62, 286
BspTNI GGTCTC 1 cut(s) 275
BsrFI RCCGGY 1 cut(s) 339
BsrI ACTGG 4 cut(s) 28, 56, 286, 295
BssAI RCCGGY 1 cut(s) 339
BssMI GATC 3 cut(s) 54, 114, 291
Bst4CI ACNGT 2 cut(s) 81, 121
BstDEI CTNAG 2 cut(s) 255, 328
BstF5I GGATG 2 cut(s) 209, 312
BstKTI GATC 3 cut(s) 57, 117, 294
BstMAI GTCTC 4 cut(s) 90, 110, 180, 275
BstMBI GATC 3 cut(s) 54, 114, 291
BstMWI GCNNNNNNNGC 1 cut(s) 308
BstPAI GACNNNNGTC 1 cut(s) 102
BstSCI CCNGG 1 cut(s) 212
BstSLI GKGCMC 1 cut(s) 16
BstX2I RGATCY 1 cut(s) 54
BstYI RGATCY 1 cut(s) 54
Bsu15I ATCGAT 1 cut(s) 158
BsuRI GGCC 1 cut(s) 181
BsuTUI ATCGAT 1 cut(s) 158
BtsCI GGATG 2 cut(s) 209, 312
BtsIMutI CAGTG 2 cut(s) 117, 302
Cfr10I RCCGGY 1 cut(s) 339
ClaI ATCGAT 1 cut(s) 158
CviJI RGCY 2 cut(s) 181, 311
CviKI_1 RGCY 2 cut(s) 181, 311
DdeI CTNAG 2 cut(s) 255, 328
DpnI GATC 3 cut(s) 56, 116, 293
DpnII GATC 3 cut(s) 54, 114, 291
DrdI GACNNNNNNGTC 1 cut(s) 172
DseDI GACNNNNNNGTC 1 cut(s) 172
Eco31I GGTCTC 1 cut(s) 275
Esp3I CGTCTC 1 cut(s) 180
FaiI YATR 2 cut(s) 63, 262
Fnu4HI GCNGC 1 cut(s) 126
FokI GGATG 2 cut(s) 196, 299
Fsp4HI GCNGC 1 cut(s) 126
FspBI CTAG 1 cut(s) 249
GluI GCNGC 1 cut(s) 126
GsaI CCCAGC 1 cut(s) 205
HaeIII GGCC 1 cut(s) 181
HapII CCGG 2 cut(s) 214, 340
HinfI GANTC 4 cut(s) 45, 73, 98, 135
HpaII CCGG 2 cut(s) 214, 340
HphI GGTGA 1 cut(s) 329
Hpy166II GTNNAC 1 cut(s) 14
Hpy188I TCNGA 2 cut(s) 258, 331
Hpy8I GTNNAC 1 cut(s) 14
Hpy99I CGWCG 3 cut(s) 134, 169, 281
HpyAV CCTTC 2 cut(s) 100, 344
HpyCH4III ACNGT 2 cut(s) 81, 121
HpyCH4IV ACGT 1 cut(s) 267
HpyCH4V TGCA 1 cut(s) 14
HpyF10VI GCNNNNNNNGC 1 cut(s) 308
HpyF3I CTNAG 2 cut(s) 255, 328
HpySE526I ACGT 1 cut(s) 267
Kzo9I GATC 3 cut(s) 54, 114, 291
LpnPI CCDG 7 cut(s) 37, 41, 215, 227, 299, 308, 353
MaeI CTAG 1 cut(s) 249
MaeII ACGT 1 cut(s) 267
MalI GATC 3 cut(s) 56, 116, 293
MboI GATC 3 cut(s) 54, 114, 291
MflI RGATCY 1 cut(s) 54
MhlI GDGCHC 1 cut(s) 16
MlyI GAGTC 2 cut(s) 67, 92
MnlI CCTC 1 cut(s) 238
MseI TTAA 1 cut(s) 186
MspI CCGG 2 cut(s) 214, 340
MspR9I CCNGG 1 cut(s) 214
MwoI GCNNNNNNNGC 1 cut(s) 308
NciI CCSGG 1 cut(s) 214
NdeII GATC 3 cut(s) 54, 114, 291
NmeAIII GCCGAG 1 cut(s) 157
PcsI WCGNNNNNNNCGW 3 cut(s) 77, 164, 273
PfeI GAWTC 2 cut(s) 45, 135
PflFI GACNNNGTC 2 cut(s) 172, 286
PkrI GCNGC 1 cut(s) 127
PleI GAGTC 2 cut(s) 67, 92
PpsI GAGTC 2 cut(s) 67, 92
PshAI GACNNNNGTC 1 cut(s) 102
PspFI CCCAGC 1 cut(s) 201
PsuI RGATCY 1 cut(s) 54
PsyI GACNNNGTC 2 cut(s) 172, 286
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 1 cut(s) 126
Sau3AI GATC 3 cut(s) 54, 114, 291
SchI GAGTC 2 cut(s) 67, 92
ScrFI CCNGG 1 cut(s) 214
SduI GDGCHC 1 cut(s) 16
SetI ASST 2 cut(s) 270, 336
SgrAI CRCCGGYG 1 cut(s) 339
SsiI CCGC 2 cut(s) 7, 126
SspMI CTAG 1 cut(s) 249
StyD4I CCNGG 1 cut(s) 212
TaaI ACNGT 2 cut(s) 81, 121
TaiI ACGT 1 cut(s) 270
TaqI TCGA 4 cut(s) 71, 158, 276, 290
TauI GCSGC 1 cut(s) 128
TfiI GAWTC 2 cut(s) 45, 135
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TscAI CASTG 2 cut(s) 124, 302
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 56, 147
TspRI CASTG 2 cut(s) 124, 302
Tth111I GACNNNGTC 2 cut(s) 172, 286
VneI GTGCAC 1 cut(s) 12
XspI CTAG 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.