Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006068

Physical Location & Seq

Genomic Coordinates Reverse (-)

21930054 .. 21930437

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G217200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAACCGTCGATCTAGAACTCTGCATCGCCGGTCCTCTCAGAACCGGTCGACCGAGCCGTTCCTCAAATACCTAAAGCCCGGCGCGCTCGCCCAAATCCGAGACTCGAGAATCAGCAGCGCCAGATCACACCGTCTCAACTGGCTTTCTCAGATCTGTACGTCGCCGCCTTCTTCTCCGGCGAACGACGCTGGTCTTCCACAGGTCAACGCCATCGACGGCTTTCCTTGCTTCTCCGGTCGGATCTATGGCCCCAGATGCCCCCAGAGAAAGAAACTCGCGGCGTCCAAGTCCGTTCTGTTCCTCAACCCCTCGAGCCCGGTTCACGACTCTCCCGATCCGATAATTGATGTGTTTAGTACGGACATTCTTGCTGCACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

128

Amino Acids

14.05

Weight (kDa)

10.6

Isoelectric Point (pI)

78.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26960 AT5G54970
fragaria_vesca	FvH4_3g02050 FvH4_6g43180
malus_domestica	MD09G1108900.v1.1 MD17G1096900.v1.1
prunus_persica	Prupe.3G217200_v2.0.a1
pyrus_communis	pycom09g03130 pycom17g09270
rosa_chinensis	RchiOBHm_Chr2g0159281 RchiOBHm_Chr5g0002951
rosa_laevigata	RLG00000021150 RLG00000031073 RLG00000035773
rosa_multiflora	Rmu_co8060000.1_g000001 Rmu_sc0010590.1_g000004 Rmu_sc0016200.1_g000008
rosa_roxburghii	Rroxscaffold_3G00269970
rosa_rugosa	Rorug04G0400800
rosa_samantha	Rh2AG542000 Rh2BG554600 Rh2CG524700 Rh5AG023800 Rh5CG026600 Rh5DG025100
rosa_wichuraiana	Rw2G044830 Rw5G002250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	50
AccII	CGCG	2 cut(s)	86, 281
AciI	CCGC	2 cut(s)	167, 281
AclWI	GGATC	2 cut(s)	251, 332
AcyI	GRCGYC	1 cut(s)	284
AfaI	GTAC	2 cut(s)	160, 361
AgeI	ACCGGT	1 cut(s)	45
Alw26I	GTCTC	2 cut(s)	96, 140
AlwI	GGATC	2 cut(s)	251, 332
Ama87I	CYCGRG	2 cut(s)	106, 313
AoxI	GGCC	1 cut(s)	250
ApeKI	GCWGC	2 cut(s)	117, 374
AsiGI	ACCGGT	1 cut(s)	45
AspLEI	GCGC	3 cut(s)	86, 88, 122
AspS9I	GGNCC	2 cut(s)	33, 251
AsuC2I	CCSGG	2 cut(s)	81, 320
AvaI	CYCGRG	2 cut(s)	106, 313
AvaII	GGWCC	1 cut(s)	33
BanII	GRGCYC	1 cut(s)	320
BbsI	GAAGAC	1 cut(s)	188
BbvI	GCAGC	2 cut(s)	129, 361
BccI	CCATC	1 cut(s)	221
BceAI	ACGGC	2 cut(s)	43, 235
BcnI	CCSGG	2 cut(s)	81, 320
BcoDI	GTCTC	2 cut(s)	96, 140
BfaI	CTAG	1 cut(s)	15
BfoI	RGCGCY	1 cut(s)	123
BglII	AGATCT	1 cut(s)	153
BisI	GCNGC	4 cut(s)	118, 167, 282, 375
BlsI	GCNGC	4 cut(s)	119, 168, 283, 376
Bme1390I	CCNGG	2 cut(s)	81, 320
Bme18I	GGWCC	1 cut(s)	33
BmeT110I	CYCGRG	2 cut(s)	106, 313
BmgT120I	GGNCC	2 cut(s)	33, 251
BmiI	GGNNCC	1 cut(s)	253
BmrFI	CCNGG	2 cut(s)	81, 320
BmsI	GCATC	2 cut(s)	34, 248
BoxI	GACNNNNGTC	1 cut(s)	192
BpiI	GAAGAC	1 cut(s)	188
BpuMI	CCSGG	2 cut(s)	81, 320
BsaHI	GRCGYC	1 cut(s)	284
BsaWI	WCCGGW	2 cut(s)	45, 236
Bse118I	RCCGGY	2 cut(s)	30, 45
Bse1I	ACTGG	1 cut(s)	146
BseMII	CTCAG	2 cut(s)	53, 164
BseNI	ACTGG	1 cut(s)	146
BsePI	GCGCGC	1 cut(s)	84
BseXI	GCAGC	2 cut(s)	129, 361
BsgI	GTGCAG	1 cut(s)	360
Bsh1236I	CGCG	2 cut(s)	86, 281
Bsh1285I	CGRYCG	3 cut(s)	50, 54, 241
BshFI	GGCC	1 cut(s)	252
BshTI	ACCGGT	1 cut(s)	45
BsiEI	CGRYCG	3 cut(s)	50, 54, 241
BsiHKCI	CYCGRG	2 cut(s)	106, 313
BsiSI	CCGG	6 cut(s)	31, 46, 81, 179, 237, 320
BsmAI	GTCTC	2 cut(s)	96, 140
BsmBI	CGTCTC	1 cut(s)	140
BsnI	GGCC	1 cut(s)	252
BsoBI	CYCGRG	2 cut(s)	106, 313
Bsp1286I	GDGCHC	1 cut(s)	320
Bsp143I	GATC	5 cut(s)	11, 125, 153, 243, 337
BspACI	CCGC	2 cut(s)	167, 281
BspANI	GGCC	1 cut(s)	252
BspCNI	CTCAG	2 cut(s)	52, 163
BspFNI	CGCG	2 cut(s)	86, 281
BspLI	GGNNCC	1 cut(s)	253
BspPI	GGATC	2 cut(s)	251, 332
BsrFI	RCCGGY	2 cut(s)	30, 45
BsrI	ACTGG	1 cut(s)	146
BssAI	RCCGGY	2 cut(s)	30, 45
BssHII	GCGCGC	1 cut(s)	84
BssMI	GATC	5 cut(s)	11, 125, 153, 243, 337
BssNI	GRCGYC	1 cut(s)	284
Bst4CI	ACNGT	2 cut(s)	8, 134
BstACI	GRCGYC	1 cut(s)	284
BstC8I	GCNNGC	2 cut(s)	86, 90
BstDEI	CTNAG	2 cut(s)	39, 150
BstFNI	CGCG	2 cut(s)	86, 281
BstH2I	RGCGCY	1 cut(s)	123
BstHHI	GCGC	3 cut(s)	86, 88, 122
BstKTI	GATC	5 cut(s)	14, 128, 156, 246, 340
BstMAI	GTCTC	2 cut(s)	96, 140
BstMBI	GATC	5 cut(s)	11, 125, 153, 243, 337
BstMCI	CGRYCG	3 cut(s)	50, 54, 241
BstMWI	GCNNNNNNNGC	4 cut(s)	85, 188, 228, 258
BstPAI	GACNNNNGTC	1 cut(s)	192
BstSCI	CCNGG	2 cut(s)	79, 318
BstUI	CGCG	2 cut(s)	86, 281
BstV1I	GCAGC	2 cut(s)	129, 361
BstV2I	GAAGAC	1 cut(s)	188
BstX2I	RGATCY	2 cut(s)	153, 243
BstYI	RGATCY	2 cut(s)	153, 243
BsuRI	GGCC	1 cut(s)	252
BtgZI	GCGATG	1 cut(s)	11
Cac8I	GCNNGC	2 cut(s)	86, 90
CfoI	GCGC	3 cut(s)	86, 88, 122
Cfr10I	RCCGGY	2 cut(s)	30, 45
Cfr13I	GGNCC	2 cut(s)	33, 251
CseI	GACGC	2 cut(s)	197, 273
Csp6I	GTAC	2 cut(s)	159, 360
CspAI	ACCGGT	1 cut(s)	45
CviJI	RGCY	6 cut(s)	58, 79, 145, 222, 252, 318
CviKI_1	RGCY	6 cut(s)	58, 79, 145, 222, 252, 318
CviQI	GTAC	2 cut(s)	159, 360
DdeI	CTNAG	2 cut(s)	39, 150
DpnI	GATC	5 cut(s)	13, 127, 155, 245, 339
DpnII	GATC	5 cut(s)	11, 125, 153, 243, 337
Eco24I	GRGCYC	1 cut(s)	320
Eco47I	GGWCC	1 cut(s)	33
Eco88I	CYCGRG	2 cut(s)	106, 313
EcoT38I	GRGCYC	1 cut(s)	320
Esp3I	CGTCTC	1 cut(s)	140
FaiI	YATR	1 cut(s)	249
FblI	GTMKAC	1 cut(s)	50
Fnu4HI	GCNGC	4 cut(s)	118, 167, 282, 375
FriOI	GRGCYC	1 cut(s)	320
Fsp4HI	GCNGC	4 cut(s)	118, 167, 282, 375
FspBI	CTAG	1 cut(s)	15
GlaI	GCGC	3 cut(s)	85, 87, 121
GluI	GCNGC	4 cut(s)	118, 167, 282, 375
HaeII	RGCGCY	1 cut(s)	123
HaeIII	GGCC	1 cut(s)	252
HapII	CCGG	6 cut(s)	31, 46, 81, 179, 237, 320
HgaI	GACGC	2 cut(s)	197, 273
HhaI	GCGC	3 cut(s)	86, 88, 122
Hin1I	GRCGYC	1 cut(s)	284
Hin6I	GCGC	3 cut(s)	84, 86, 120
HinP1I	GCGC	3 cut(s)	84, 86, 120
HincII	GTYRAC	2 cut(s)	51, 208
HindII	GTYRAC	2 cut(s)	51, 208
HinfI	GANTC	3 cut(s)	104, 111, 329
HpaII	CCGG	6 cut(s)	31, 46, 81, 179, 237, 320
Hpy166II	GTNNAC	3 cut(s)	51, 208, 325
Hpy188I	TCNGA	5 cut(s)	42, 101, 153, 243, 342
Hpy188III	TCNNGA	4 cut(s)	15, 108, 326, 335
Hpy8I	GTNNAC	3 cut(s)	51, 208, 325
Hpy99I	CGWCG	4 cut(s)	12, 166, 191, 221
HpyAV	CCTTC	1 cut(s)	180
HpyCH4III	ACNGT	2 cut(s)	8, 134
HpyCH4IV	ACGT	1 cut(s)	161
HpyCH4V	TGCA	2 cut(s)	25, 377
HpyF10VI	GCNNNNNNNGC	4 cut(s)	85, 188, 228, 258
HpyF3I	CTNAG	2 cut(s)	39, 150
HpySE526I	ACGT	1 cut(s)	161
Hsp92I	GRCGYC	1 cut(s)	284
HspAI	GCGC	3 cut(s)	84, 86, 120
Kzo9I	GATC	5 cut(s)	11, 125, 153, 243, 337
Lsp1109I	GCAGC	2 cut(s)	129, 361
LweI	GCATC	2 cut(s)	34, 248
MaeI	CTAG	1 cut(s)	15
MaeII	ACGT	1 cut(s)	161
MalI	GATC	5 cut(s)	13, 127, 155, 245, 339
MboI	GATC	5 cut(s)	11, 125, 153, 243, 337
MboII	GAAGA	2 cut(s)	165, 188
MflI	RGATCY	2 cut(s)	153, 243
MhlI	GDGCHC	1 cut(s)	320
MluCI	AATT	1 cut(s)	345
MlyI	GAGTC	2 cut(s)	98, 323
MmeI	TCCRAC	1 cut(s)	221
MnlI	CCTC	4 cut(s)	46, 74, 314, 322
MspI	CCGG	6 cut(s)	31, 46, 81, 179, 237, 320
MspR9I	CCNGG	2 cut(s)	81, 320
MvnI	CGCG	2 cut(s)	86, 281
MwoI	GCNNNNNNNGC	4 cut(s)	85, 188, 228, 258
NciI	CCSGG	2 cut(s)	81, 320
NdeII	GATC	5 cut(s)	11, 125, 153, 243, 337
NlaIV	GGNNCC	1 cut(s)	253
PaeR7I	CTCGAG	2 cut(s)	106, 313
PauI	GCGCGC	1 cut(s)	84
PcsI	WCGNNNNNNNCGW	2 cut(s)	56, 333
PfeI	GAWTC	1 cut(s)	111
PinAI	ACCGGT	1 cut(s)	45
PkrI	GCNGC	4 cut(s)	119, 168, 283, 376
PleI	GAGTC	2 cut(s)	98, 323
PpsI	GAGTC	2 cut(s)	98, 323
PshAI	GACNNNNGTC	1 cut(s)	192
PspN4I	GGNNCC	1 cut(s)	253
PspPI	GGNCC	2 cut(s)	33, 251
PspXI	VCTCGAGB	1 cut(s)	313
PsuI	RGATCY	2 cut(s)	153, 243
PteI	GCGCGC	1 cut(s)	84
RsaI	GTAC	2 cut(s)	160, 361
RsaNI	GTAC	2 cut(s)	159, 360
SalI	GTCGAC	1 cut(s)	49
SatI	GCNGC	4 cut(s)	118, 167, 282, 375
Sau3AI	GATC	5 cut(s)	11, 125, 153, 243, 337
Sau96I	GGNCC	2 cut(s)	33, 251
SchI	GAGTC	2 cut(s)	98, 323
ScrFI	CCNGG	2 cut(s)	81, 320
SduI	GDGCHC	1 cut(s)	320
SetI	ASST	3 cut(s)	75, 164, 207
SfaNI	GCATC	2 cut(s)	34, 248
Sfr274I	CTCGAG	2 cut(s)	106, 313
SinI	GGWCC	1 cut(s)	33
SlaI	CTCGAG	2 cut(s)	106, 313
SmlI	CTYRAG	2 cut(s)	106, 313
SmoI	CTYRAG	2 cut(s)	106, 313
Sse9I	AATT	1 cut(s)	345
SsiI	CCGC	2 cut(s)	167, 281
SspMI	CTAG	1 cut(s)	15
StyD4I	CCNGG	2 cut(s)	79, 318
TaaI	ACNGT	2 cut(s)	8, 134
TaiI	ACGT	1 cut(s)	164
TaqI	TCGA	5 cut(s)	10, 50, 107, 216, 314
TaqII	GACCGA	1 cut(s)	68
TasI	AATT	1 cut(s)	345
TauI	GCSGC	2 cut(s)	169, 284
TfiI	GAWTC	1 cut(s)	111
TseI	GCWGC	2 cut(s)	117, 374
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	283, 377
VpaK11BI	GGWCC	1 cut(s)	33
XbaI	TCTAGA	1 cut(s)	14
XhoI	CTCGAG	2 cut(s)	106, 313
XmiI	GTMKAC	1 cut(s)	50
XspI	CTAG	1 cut(s)	15

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.