FvH4_6g43180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0006068
Physical Location & Seq
Reverse (-)
33469282 .. 33470126
845 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g43180.t1

Sequence Viewer

Length: 384 bp
ATGAACCGCCGCGCAAGAACCGCCGCCCACCGCTCCTCACCCAACCGGTCCTCACCGTTCCTCAAGTTCCTCAAACCCGGAGCCCTAGCCCAAATCCGAGACTCGCGAATCAGCAGCTCCAGATCTCACAGAATCAACTGGATCTCCCAGATCCGCTCCACTCCGCCGATGTCTCCCCCCGCCGACTCCGGCCTACCTCAAATCACCGTCGCCGCCGACGGATTCCCTTGCTTCTCCGGCAGGATCTACGGCCCGAGATGCCCGCAGAGGAAGAAGCTCGTGGCGGGGAAGTCTGTGATGTTCCTCCGGCCGTCGAGTCCGGTATCCGACTCGCCTGATCCGATTATCGATCTGTTTAGTAGTGACATTCTTACTGCACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

13.93

Weight (kDa)

11.47

Isoelectric Point (pI)

77.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 33, 156
AccII CGCG 2 cut(s) 12, 106
AclWI GGATC 4 cut(s) 145, 149, 251, 332
AcoI YGGCCR 1 cut(s) 308
AgeI ACCGGT 1 cut(s) 45
AluBI AGCT 2 cut(s) 117, 277
AluI AGCT 2 cut(s) 117, 277
Alw26I GTCTC 2 cut(s) 93, 177
AlwI GGATC 4 cut(s) 145, 149, 251, 332
Ama87I CYCGRG 1 cut(s) 253
AoxI GGCC 3 cut(s) 190, 250, 308
ApeKI GCWGC 1 cut(s) 114
AsiGI ACCGGT 1 cut(s) 45
AspLEI GCGC 1 cut(s) 14
AspS9I GGNCC 2 cut(s) 48, 251
AsuC2I CCSGG 1 cut(s) 78
AsuHPI GGTGA 3 cut(s) 30, 45, 196
AvaI CYCGRG 1 cut(s) 253
AvaII GGWCC 1 cut(s) 48
BanII GRGCYC 1 cut(s) 85
BauI CACGAG 1 cut(s) 278
BbvI GCAGC 1 cut(s) 126
BceAI ACGGC 2 cut(s) 265, 295
BciVI GTATCC 1 cut(s) 334
BcnI CCSGG 1 cut(s) 78
BcoDI GTCTC 2 cut(s) 93, 177
BfaI CTAG 1 cut(s) 86
BfuI GTATCC 1 cut(s) 334
BglII AGATCT 1 cut(s) 122
BisI GCNGC 4 cut(s) 10, 24, 115, 213
BlsI GCNGC 4 cut(s) 11, 25, 116, 214
Bme1390I CCNGG 1 cut(s) 78
Bme18I GGWCC 1 cut(s) 48
BmeT110I CYCGRG 1 cut(s) 253
BmgT120I GGNCC 2 cut(s) 48, 251
BmiI GGNNCC 1 cut(s) 82
BmrFI CCNGG 1 cut(s) 78
BmsI GCATC 1 cut(s) 248
BpmI CTGGAG 1 cut(s) 103
BpuEI CTTGAG 1 cut(s) 47
BpuMI CCSGG 1 cut(s) 78
Bsa29I ATCGAT 1 cut(s) 348
BsaWI WCCGGW 2 cut(s) 45, 319
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bse118I RCCGGY 1 cut(s) 45
Bse1I ACTGG 1 cut(s) 143
BseCI ATCGAT 1 cut(s) 348
BseNI ACTGG 1 cut(s) 143
BseRI GAGGAG 1 cut(s) 25
BseX3I CGGCCG 1 cut(s) 308
BseXI GCAGC 1 cut(s) 126
BsgI GTGCAG 1 cut(s) 360
Bsh1236I CGCG 2 cut(s) 12, 106
Bsh1285I CGRYCG 1 cut(s) 311
BshFI GGCC 3 cut(s) 192, 252, 310
BshTI ACCGGT 1 cut(s) 45
BshVI ATCGAT 1 cut(s) 348
BsiEI CGRYCG 1 cut(s) 311
BsiHKCI CYCGRG 1 cut(s) 253
BsiSI CCGG 6 cut(s) 46, 78, 189, 237, 307, 320
BsmAI GTCTC 2 cut(s) 93, 177
BsnI GGCC 3 cut(s) 192, 252, 310
BsoBI CYCGRG 1 cut(s) 253
Bsp1286I GDGCHC 1 cut(s) 85
Bsp143I GATC 6 cut(s) 122, 141, 150, 243, 337, 349
Bsp68I TCGCGA 1 cut(s) 106
BspANI GGCC 3 cut(s) 192, 252, 310
BspDI ATCGAT 1 cut(s) 348
BspFNI CGCG 2 cut(s) 12, 106
BspLI GGNNCC 1 cut(s) 82
BspPI GGATC 4 cut(s) 145, 149, 251, 332
BsrBI CCGCTC 2 cut(s) 33, 156
BsrFI RCCGGY 1 cut(s) 45
BsrI ACTGG 1 cut(s) 143
BssAI RCCGGY 1 cut(s) 45
BssMI GATC 6 cut(s) 122, 141, 150, 243, 337, 349
BssSI CACGAG 1 cut(s) 278
Bst2BI CACGAG 1 cut(s) 278
Bst4CI ACNGT 2 cut(s) 57, 208
BstC8I GCNNGC 1 cut(s) 263
BstFNI CGCG 2 cut(s) 12, 106
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 6 cut(s) 125, 144, 153, 246, 340, 352
BstMAI GTCTC 2 cut(s) 93, 177
BstMBI GATC 6 cut(s) 122, 141, 150, 243, 337, 349
BstMCI CGRYCG 1 cut(s) 311
BstMWI GCNNNNNNNGC 3 cut(s) 20, 237, 258
BstSCI CCNGG 1 cut(s) 76
BstUI CGCG 2 cut(s) 12, 106
BstV1I GCAGC 1 cut(s) 126
BstX2I RGATCY 4 cut(s) 122, 141, 150, 243
BstYI RGATCY 4 cut(s) 122, 141, 150, 243
BstZI CGGCCG 1 cut(s) 308
Bsu15I ATCGAT 1 cut(s) 348
BsuI GTATCC 1 cut(s) 334
BsuRI GGCC 3 cut(s) 192, 252, 310
BsuTUI ATCGAT 1 cut(s) 348
BtuMI TCGCGA 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 263
CfoI GCGC 1 cut(s) 14
Cfr10I RCCGGY 1 cut(s) 45
Cfr13I GGNCC 2 cut(s) 48, 251
ClaI ATCGAT 1 cut(s) 348
CspAI ACCGGT 1 cut(s) 45
CviJI RGCY 7 cut(s) 83, 89, 117, 192, 252, 277, 310
CviKI_1 RGCY 7 cut(s) 83, 89, 117, 192, 252, 277, 310
DpnI GATC 6 cut(s) 124, 143, 152, 245, 339, 351
DpnII GATC 6 cut(s) 122, 141, 150, 243, 337, 349
EaeI YGGCCR 1 cut(s) 308
EagI CGGCCG 1 cut(s) 308
EciI GGCGGA 1 cut(s) 153
EclXI CGGCCG 1 cut(s) 308
Eco24I GRGCYC 1 cut(s) 85
Eco47I GGWCC 1 cut(s) 48
Eco52I CGGCCG 1 cut(s) 308
Eco88I CYCGRG 1 cut(s) 253
EcoT38I GRGCYC 1 cut(s) 85
FauI CCCGC 3 cut(s) 187, 270, 277
Fnu4HI GCNGC 4 cut(s) 10, 24, 115, 213
FriOI GRGCYC 1 cut(s) 85
Fsp4HI GCNGC 4 cut(s) 10, 24, 115, 213
FspBI CTAG 1 cut(s) 86
GlaI GCGC 1 cut(s) 13
GluI GCNGC 4 cut(s) 10, 24, 115, 213
GsuI CTGGAG 1 cut(s) 103
HaeIII GGCC 3 cut(s) 192, 252, 310
HapII CCGG 6 cut(s) 46, 78, 189, 237, 307, 320
HhaI GCGC 1 cut(s) 14
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HinfI GANTC 7 cut(s) 101, 108, 132, 185, 222, 316, 329
HpaII CCGG 6 cut(s) 46, 78, 189, 237, 307, 320
HphI GGTGA 3 cut(s) 30, 45, 196
Hpy188I TCNGA 3 cut(s) 98, 328, 342
Hpy188III TCNNGA 2 cut(s) 105, 120
Hpy99I CGWCG 3 cut(s) 212, 221, 316
HpyCH4III ACNGT 2 cut(s) 57, 208
HpyCH4V TGCA 1 cut(s) 377
HpyF10VI GCNNNNNNNGC 3 cut(s) 20, 237, 258
HspAI GCGC 1 cut(s) 12
Kzo9I GATC 6 cut(s) 122, 141, 150, 243, 337, 349
LmnI GCTCC 4 cut(s) 38, 80, 122, 161
Lsp1109I GCAGC 1 cut(s) 126
LweI GCATC 1 cut(s) 248
MaeI CTAG 1 cut(s) 86
MaeIII GTNAC 1 cut(s) 362
MalI GATC 6 cut(s) 124, 143, 152, 245, 339, 351
MbiI CCGCTC 2 cut(s) 33, 156
MboI GATC 6 cut(s) 122, 141, 150, 243, 337, 349
MboII GAAGA 1 cut(s) 283
MflI RGATCY 4 cut(s) 122, 141, 150, 243
MhlI GDGCHC 1 cut(s) 85
MlyI GAGTC 4 cut(s) 95, 179, 323, 325
MmeI TCCRAC 1 cut(s) 351
MnlI CCTC 7 cut(s) 46, 61, 71, 80, 207, 261, 314
MspI CCGG 6 cut(s) 46, 78, 189, 237, 307, 320
MspR9I CCNGG 1 cut(s) 78
MvnI CGCG 2 cut(s) 12, 106
MwoI GCNNNNNNNGC 3 cut(s) 20, 237, 258
NciI CCSGG 1 cut(s) 78
NdeII GATC 6 cut(s) 122, 141, 150, 243, 337, 349
NlaIV GGNNCC 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 362
NruI TCGCGA 1 cut(s) 106
PcsI WCGNNNNNNNCGW 1 cut(s) 338
PfeI GAWTC 3 cut(s) 108, 132, 222
PinAI ACCGGT 1 cut(s) 45
PkrI GCNGC 4 cut(s) 11, 25, 116, 214
PleI GAGTC 4 cut(s) 95, 179, 323, 324
PpsI GAGTC 4 cut(s) 95, 179, 323, 324
PspN4I GGNNCC 1 cut(s) 82
PspPI GGNCC 2 cut(s) 48, 251
PsuI RGATCY 4 cut(s) 122, 141, 150, 243
RruI TCGCGA 1 cut(s) 106
SatI GCNGC 4 cut(s) 10, 24, 115, 213
Sau3AI GATC 6 cut(s) 122, 141, 150, 243, 337, 349
Sau96I GGNCC 2 cut(s) 48, 251
SchI GAGTC 4 cut(s) 95, 179, 323, 325
ScrFI CCNGG 1 cut(s) 78
SduI GDGCHC 1 cut(s) 85
SetI ASST 3 cut(s) 119, 199, 279
SfaNI GCATC 1 cut(s) 248
SinI GGWCC 1 cut(s) 48
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
SspMI CTAG 1 cut(s) 86
StyD4I CCNGG 1 cut(s) 76
TaaI ACNGT 2 cut(s) 57, 208
TaqI TCGA 2 cut(s) 314, 348
TauI GCSGC 3 cut(s) 12, 26, 215
TfiI GAWTC 3 cut(s) 108, 132, 222
TseFI GTSAC 1 cut(s) 362
TseI GCWGC 1 cut(s) 114
Tsp45I GTSAC 1 cut(s) 362
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 234
VpaK11BI GGWCC 1 cut(s) 48
XspI CTAG 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.