Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0006068

Physical Location & Seq

Genomic Coordinates Forward (+)

2330284 .. 2330717

Gene Structure 434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g03130.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGTTTTTTGGCATAACTTGTAATAAAATTATAAAACATTGGACCACACCACAGTGCCACGCCAAAAATAAAACCCTACTGTTGAAGTTTCCGCGCCTCAAATCTTTGGTTTTGAAACCCCGGCAGCCTCCTCTCCCTCCACTTCTTCCCGCCTCTCTCTGCTCCCACTCCCAAACCTTAAAACTTACATTTCTCTCTCTCTCTCTCTCTCTCTCAGCCATGAAACGCCGATCTAGACTCCACCGCCGGTCCTCCCCCAACCGGTCGGCCGAGCCATTTCTCAAATACCTAAAGCCCGGCGCGCTCGCCCAAATCCGAGACTCCCGAATCAGCAGGGCCAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

115

Amino Acids

13.04

Weight (kDa)

11.88

Isoelectric Point (pI)

61.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006068)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26960 AT5G54970
fragaria_vesca	FvH4_3g02050 FvH4_6g43180
malus_domestica	MD09G1108900.v1.1 MD17G1096900.v1.1
prunus_persica	Prupe.3G217200_v2.0.a1
pyrus_communis	pycom09g03130 pycom17g09270
rosa_chinensis	RchiOBHm_Chr2g0159281 RchiOBHm_Chr5g0002951
rosa_laevigata	RLG00000021150 RLG00000031073 RLG00000035773
rosa_multiflora	Rmu_co8060000.1_g000001 Rmu_sc0010590.1_g000004 Rmu_sc0016200.1_g000008
rosa_roxburghii	Rroxscaffold_3G00269970
rosa_rugosa	Rorug04G0400800
rosa_samantha	Rh2AG542000 Rh2BG554600 Rh2CG524700 Rh5AG023800 Rh5CG026600 Rh5DG025100
rosa_wichuraiana	Rw2G044830 Rw5G002250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	32
AccII	CGCG	2 cut(s)	94, 302
AciI	CCGC	3 cut(s)	92, 150, 244
AcoI	YGGCCR	1 cut(s)	267
AfiI	CCNNNNNNNGG	1 cut(s)	261
AgeI	ACCGGT	1 cut(s)	261
AgsI	TTSAA	2 cut(s)	85, 115
AleI	CACNNNNGTG	1 cut(s)	52
Alw26I	GTCTC	1 cut(s)	312
AoxI	GGCC	2 cut(s)	267, 336
ApeKI	GCWGC	1 cut(s)	124
AsiGI	ACCGGT	1 cut(s)	261
AspLEI	GCGC	3 cut(s)	96, 302, 304
AspS9I	GGNCC	3 cut(s)	42, 249, 336
AsuC2I	CCSGG	2 cut(s)	121, 297
AvaII	GGWCC	2 cut(s)	42, 249
BbvI	GCAGC	1 cut(s)	136
BcnI	CCSGG	2 cut(s)	121, 297
BcoDI	GTCTC	1 cut(s)	312
BfaI	CTAG	1 cut(s)	234
BisI	GCNGC	1 cut(s)	125
BlsI	GCNGC	1 cut(s)	126
Bme1390I	CCNGG	2 cut(s)	121, 297
Bme18I	GGWCC	2 cut(s)	42, 249
BmgT120I	GGNCC	3 cut(s)	42, 249, 336
BmrFI	CCNGG	2 cut(s)	121, 297
BpuMI	CCSGG	2 cut(s)	121, 297
BsaJI	CCNNGG	1 cut(s)	119
BsaWI	WCCGGW	1 cut(s)	261
Bsc4I	CCNNNNNNNGG	1 cut(s)	261
Bse118I	RCCGGY	2 cut(s)	246, 261
BseDI	CCNNGG	1 cut(s)	119
BseLI	CCNNNNNNNGG	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	228
BsePI	GCGCGC	1 cut(s)	300
BseRI	GAGGAG	1 cut(s)	120
BseX3I	CGGCCG	1 cut(s)	267
BseXI	GCAGC	1 cut(s)	136
Bsh1236I	CGCG	2 cut(s)	94, 302
Bsh1285I	CGRYCG	2 cut(s)	266, 270
BshFI	GGCC	2 cut(s)	269, 338
BshTI	ACCGGT	1 cut(s)	261
BsiEI	CGRYCG	2 cut(s)	266, 270
BsiSI	CCGG	4 cut(s)	121, 247, 262, 297
BslI	CCNNNNNNNGG	1 cut(s)	261
BsmAI	GTCTC	1 cut(s)	312
BsnI	GGCC	2 cut(s)	269, 338
Bsp143I	GATC	1 cut(s)	230
BspACI	CCGC	3 cut(s)	92, 150, 244
BspANI	GGCC	2 cut(s)	269, 338
BspCNI	CTCAG	1 cut(s)	227
BspFNI	CGCG	2 cut(s)	94, 302
BsrFI	RCCGGY	2 cut(s)	246, 261
BssAI	RCCGGY	2 cut(s)	246, 261
BssECI	CCNNGG	1 cut(s)	119
BssHII	GCGCGC	1 cut(s)	300
BssMI	GATC	1 cut(s)	230
Bst4CI	ACNGT	2 cut(s)	54, 81
BstC8I	GCNNGC	2 cut(s)	302, 306
BstDEI	CTNAG	1 cut(s)	214
BstFNI	CGCG	2 cut(s)	94, 302
BstHHI	GCGC	3 cut(s)	96, 302, 304
BstKTI	GATC	1 cut(s)	233
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	1 cut(s)	230
BstMCI	CGRYCG	2 cut(s)	266, 270
BstMWI	GCNNNNNNNGC	1 cut(s)	301
BstSCI	CCNGG	2 cut(s)	119, 295
BstUI	CGCG	2 cut(s)	94, 302
BstV1I	GCAGC	1 cut(s)	136
BstZI	CGGCCG	1 cut(s)	267
BsuRI	GGCC	2 cut(s)	269, 338
BtsIMutI	CAGTG	1 cut(s)	59
Cac8I	GCNNGC	2 cut(s)	302, 306
CfoI	GCGC	3 cut(s)	96, 302, 304
Cfr10I	RCCGGY	2 cut(s)	246, 261
Cfr13I	GGNCC	3 cut(s)	42, 249, 336
CspAI	ACCGGT	1 cut(s)	261
CviAII	CATG	1 cut(s)	220
CviJI	RGCY	6 cut(s)	127, 218, 269, 274, 295, 338
CviKI_1	RGCY	6 cut(s)	127, 218, 269, 274, 295, 338
DdeI	CTNAG	1 cut(s)	214
DpnI	GATC	1 cut(s)	232
DpnII	GATC	1 cut(s)	230
EaeI	YGGCCR	1 cut(s)	267
EagI	CGGCCG	1 cut(s)	267
EclXI	CGGCCG	1 cut(s)	267
Eco47I	GGWCC	2 cut(s)	42, 249
Eco52I	CGGCCG	1 cut(s)	267
FaeI	CATG	1 cut(s)	223
FaiI	YATR	3 cut(s)	14, 32, 221
FatI	CATG	1 cut(s)	219
FauI	CCCGC	1 cut(s)	157
Fnu4HI	GCNGC	1 cut(s)	125
Fsp4HI	GCNGC	1 cut(s)	125
FspBI	CTAG	1 cut(s)	234
GlaI	GCGC	3 cut(s)	95, 301, 303
GluI	GCNGC	1 cut(s)	125
HaeIII	GGCC	2 cut(s)	269, 338
HapII	CCGG	4 cut(s)	121, 247, 262, 297
HhaI	GCGC	3 cut(s)	96, 302, 304
Hin1II	CATG	1 cut(s)	223
Hin6I	GCGC	3 cut(s)	94, 300, 302
HinP1I	GCGC	3 cut(s)	94, 300, 302
HinfI	GANTC	3 cut(s)	237, 320, 327
HpaII	CCGG	4 cut(s)	121, 247, 262, 297
Hpy188I	TCNGA	1 cut(s)	317
Hpy188III	TCNNGA	2 cut(s)	234, 324
HpyCH4III	ACNGT	2 cut(s)	54, 81
HpyF10VI	GCNNNNNNNGC	1 cut(s)	301
HpyF3I	CTNAG	1 cut(s)	214
Hsp92II	CATG	1 cut(s)	223
HspAI	GCGC	3 cut(s)	94, 300, 302
Kzo9I	GATC	1 cut(s)	230
LmnI	GCTCC	1 cut(s)	167
LpnPI	CCDG	5 cut(s)	134, 260, 275, 310, 319
Lsp1109I	GCAGC	1 cut(s)	136
MaeI	CTAG	1 cut(s)	234
MalI	GATC	1 cut(s)	232
MboI	GATC	1 cut(s)	230
MboII	GAAGA	1 cut(s)	137
MluCI	AATT	1 cut(s)	27
MlyI	GAGTC	2 cut(s)	231, 314
MnlI	CCTC	6 cut(s)	107, 138, 141, 147, 163, 262
MseI	TTAA	1 cut(s)	179
MslI	CAYNNNNRTG	1 cut(s)	52
MspI	CCGG	4 cut(s)	121, 247, 262, 297
MspR9I	CCNGG	2 cut(s)	121, 297
MvnI	CGCG	2 cut(s)	94, 302
MwoI	GCNNNNNNNGC	1 cut(s)	301
NciI	CCSGG	2 cut(s)	121, 297
NdeII	GATC	1 cut(s)	230
NlaIII	CATG	1 cut(s)	223
NmeAIII	GCCGAG	1 cut(s)	295
OliI	CACNNNNGTG	1 cut(s)	52
PauI	GCGCGC	1 cut(s)	300
PfeI	GAWTC	1 cut(s)	327
PinAI	ACCGGT	1 cut(s)	261
PkrI	GCNGC	1 cut(s)	126
PleI	GAGTC	2 cut(s)	231, 314
PpsI	GAGTC	2 cut(s)	231, 314
PsiI	TTATAA	1 cut(s)	32
PspPI	GGNCC	3 cut(s)	42, 249, 336
PteI	GCGCGC	1 cut(s)	300
RseI	CAYNNNNRTG	1 cut(s)	52
SaqAI	TTAA	1 cut(s)	179
SatI	GCNGC	1 cut(s)	125
Sau3AI	GATC	1 cut(s)	230
Sau96I	GGNCC	3 cut(s)	42, 249, 336
SchI	GAGTC	2 cut(s)	231, 314
ScrFI	CCNGG	2 cut(s)	121, 297
SetI	ASST	2 cut(s)	179, 291
SinI	GGWCC	2 cut(s)	42, 249
SmiMI	CAYNNNNRTG	1 cut(s)	52
Sse9I	AATT	1 cut(s)	27
SsiI	CCGC	3 cut(s)	92, 150, 244
SspMI	CTAG	1 cut(s)	234
StyD4I	CCNGG	2 cut(s)	119, 295
TaaI	ACNGT	2 cut(s)	54, 81
TasI	AATT	1 cut(s)	27
TfiI	GAWTC	1 cut(s)	327
Tru1I	TTAA	1 cut(s)	179
Tru9I	TTAA	1 cut(s)	179
TscAI	CASTG	1 cut(s)	59
TseI	GCWGC	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	236
TspRI	CASTG	1 cut(s)	59
VpaK11BI	GGWCC	2 cut(s)	42, 249
XbaI	TCTAGA	1 cut(s)	233
XspI	CTAG	1 cut(s)	234

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.