RLG00000031073

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0006068
Physical Location & Seq
Forward (+)
1776278 .. 1776631
354 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031073

Sequence Viewer

Length: 354 bp
ATGAAGCAAACGCTTGGAAATGGATATGGAGGGTCTACATCCTCACCAGCAAAGGGACCGCATGAAGGGTGTCACAAGTACCTAAAGCCGGGAACACTTGCCCAACTTAGGGACTCGAAAATCACCGCAAGAAGATCTAAGGGACGAGAATATGGTGACCTCAAAACTCAGATCTCTCTCTACCAACTTCTTCTGAGTTCAATATCCTCATCATCATCGCAGGCCGGAGACAATATTCTAGACCAAAGTCATGAAGATATCCCTTACTTTCTTCCTGCTACACTACTCAACCGCCCTCGGTGTCTACAACGAAAGAAACTCGTAGCAGTTGCACCTGTATTTTCATATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.82

Weight (kDa)

9.73

Isoelectric Point (pI)

58.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 35, 304
AciI CCGC 3 cut(s) 59, 126, 292
AfaI GTAC 1 cut(s) 80
AfiI CCNNNNNNNGG 5 cut(s) 53, 65, 88, 108, 109
AgsI TTSAA 1 cut(s) 201
Alw26I GTCTC 1 cut(s) 222
AoxI GGCC 1 cut(s) 222
AspS9I GGNCC 1 cut(s) 56
AsuC2I CCSGG 1 cut(s) 90
AsuHPI GGTGA 3 cut(s) 36, 115, 167
AvaII GGWCC 1 cut(s) 56
BcnI CCSGG 1 cut(s) 90
BcoDI GTCTC 1 cut(s) 222
BfaI CTAG 1 cut(s) 239
BglII AGATCT 2 cut(s) 134, 171
Bme1390I CCNGG 1 cut(s) 90
Bme18I GGWCC 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 56
BmiI GGNNCC 1 cut(s) 57
BmrFI CCNGG 1 cut(s) 90
BoxI GACNNNNGTC 1 cut(s) 246
BpuMI CCSGG 1 cut(s) 90
BsaJI CCNNGG 1 cut(s) 296
Bsc4I CCNNNNNNNGG 5 cut(s) 53, 65, 88, 108, 109
BseDI CCNNGG 1 cut(s) 296
BseGI GGATG 1 cut(s) 38
BseLI CCNNNNNNNGG 5 cut(s) 53, 65, 88, 108, 109
BseMII CTCAG 2 cut(s) 182, 185
BshFI GGCC 1 cut(s) 224
BsiSI CCGG 2 cut(s) 89, 225
BslFI GGGAC 3 cut(s) 69, 125, 156
BslI CCNNNNNNNGG 5 cut(s) 53, 65, 88, 108, 109
BsmAI GTCTC 1 cut(s) 222
BsmFI GGGAC 3 cut(s) 69, 125, 156
BsnI GGCC 1 cut(s) 224
Bsp143I GATC 2 cut(s) 134, 171
BspACI CCGC 3 cut(s) 59, 126, 292
BspANI GGCC 1 cut(s) 224
BspCNI CTCAG 2 cut(s) 181, 186
BspHI TCATGA 1 cut(s) 250
BspLI GGNNCC 1 cut(s) 57
BssECI CCNNGG 1 cut(s) 296
BssMI GATC 2 cut(s) 134, 171
BstC8I GCNNGC 1 cut(s) 222
BstDEI CTNAG 4 cut(s) 107, 138, 168, 194
BstEII GGTNACC 1 cut(s) 155
BstF5I GGATG 1 cut(s) 38
BstKTI GATC 2 cut(s) 137, 174
BstMAI GTCTC 1 cut(s) 222
BstMBI GATC 2 cut(s) 134, 171
BstPAI GACNNNNGTC 1 cut(s) 246
BstPI GGTNACC 1 cut(s) 155
BstSCI CCNGG 1 cut(s) 88
BstX2I RGATCY 2 cut(s) 134, 171
BstYI RGATCY 2 cut(s) 134, 171
BsuRI GGCC 1 cut(s) 224
BtgZI GCGATG 1 cut(s) 201
BtsCI GGATG 1 cut(s) 38
Cac8I GCNNGC 1 cut(s) 222
CciI TCATGA 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 56
Csp6I GTAC 1 cut(s) 79
CviAII CATG 2 cut(s) 62, 251
CviJI RGCY 2 cut(s) 88, 224
CviKI_1 RGCY 2 cut(s) 88, 224
CviQI GTAC 1 cut(s) 79
DdeI CTNAG 4 cut(s) 107, 138, 168, 194
DpnI GATC 2 cut(s) 136, 173
DpnII GATC 2 cut(s) 134, 171
Eco32I GATATC 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 56
Eco91I GGTNACC 1 cut(s) 155
EcoO65I GGTNACC 1 cut(s) 155
EcoRV GATATC 1 cut(s) 259
FaeI CATG 2 cut(s) 65, 254
FaiI YATR 6 cut(s) 27, 63, 153, 252, 346, 348
FaqI GGGAC 3 cut(s) 69, 125, 156
FatI CATG 2 cut(s) 61, 250
FblI GTMKAC 2 cut(s) 35, 304
FokI GGATG 1 cut(s) 25
FspBI CTAG 1 cut(s) 239
HaeIII GGCC 1 cut(s) 224
HapII CCGG 2 cut(s) 89, 225
Hin1II CATG 2 cut(s) 65, 254
HinfI GANTC 1 cut(s) 113
HpaII CCGG 2 cut(s) 89, 225
HphI GGTGA 3 cut(s) 36, 115, 167
Hpy166II GTNNAC 2 cut(s) 36, 305
Hpy188I TCNGA 2 cut(s) 171, 195
Hpy188III TCNNGA 2 cut(s) 239, 251
Hpy8I GTNNAC 2 cut(s) 36, 305
HpyAV CCTTC 1 cut(s) 59
HpyCH4V TGCA 1 cut(s) 332
HpyF3I CTNAG 4 cut(s) 107, 138, 168, 194
Hsp92II CATG 2 cut(s) 65, 254
Kzo9I GATC 2 cut(s) 134, 171
LpnPI CCDG 6 cut(s) 60, 102, 206, 238, 288, 348
MaeI CTAG 1 cut(s) 239
MaeIII GTNAC 2 cut(s) 71, 155
MalI GATC 2 cut(s) 136, 173
MboI GATC 2 cut(s) 134, 171
MboII GAAGA 4 cut(s) 144, 182, 263, 266
MflI RGATCY 2 cut(s) 134, 171
MlyI GAGTC 1 cut(s) 107
MnlI CCTC 5 cut(s) 23, 52, 170, 217, 306
MspI CCGG 2 cut(s) 89, 225
MspR9I CCNGG 1 cut(s) 90
NciI CCSGG 1 cut(s) 90
NdeII GATC 2 cut(s) 134, 171
NlaIII CATG 2 cut(s) 65, 254
NlaIV GGNNCC 1 cut(s) 57
NmuCI GTSAC 2 cut(s) 71, 155
PagI TCATGA 1 cut(s) 250
PleI GAGTC 1 cut(s) 107
PpsI GAGTC 1 cut(s) 107
PshAI GACNNNNGTC 1 cut(s) 246
PspEI GGTNACC 1 cut(s) 155
PspN4I GGNNCC 1 cut(s) 57
PspPI GGNCC 1 cut(s) 56
PsuI RGATCY 2 cut(s) 134, 171
RsaI GTAC 1 cut(s) 80
RsaNI GTAC 1 cut(s) 79
Sau3AI GATC 2 cut(s) 134, 171
Sau96I GGNCC 1 cut(s) 56
SchI GAGTC 1 cut(s) 107
ScrFI CCNGG 1 cut(s) 90
SetI ASST 3 cut(s) 84, 162, 337
SinI GGWCC 1 cut(s) 56
SsiI CCGC 3 cut(s) 59, 126, 292
SspI AATATT 1 cut(s) 235
SspMI CTAG 1 cut(s) 239
StyD4I CCNGG 1 cut(s) 88
TaqI TCGA 1 cut(s) 116
TseFI GTSAC 2 cut(s) 71, 155
Tsp45I GTSAC 2 cut(s) 71, 155
TspDTI ATGAA 4 cut(s) 17, 78, 267, 333
VpaK11BI GGWCC 1 cut(s) 56
XbaI TCTAGA 1 cut(s) 238
XmiI GTMKAC 2 cut(s) 35, 304
XspI CTAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.