AT4G27360

Dynein light chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0005787
Physical Location & Seq
Forward (+)
13693957 .. 13694663
707 bp
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UTR
Exon/CDS
Intron
AT4G27360.1

Sequence Viewer

Length: 312 bp
ATGTTAGAAGGGAAAGCAGTAATGGGTGATACAGATATGAAGCAAACAATGAAGGAAGATGCTCTTAGTTTGGCCTCCAAAGCCCTTGATTGCTTTGATGTCACCGAACCTACTCAAATTGCCCGTTTCATCAAGAAGGAATTTGATAGAAGTTACGGATCGGGGTGGCAGTGCATCGTGGGGACGCATTTCGGATCTTTCGTGACTCATTGCAGTGGCTGCTTCATCCATTTCTCAGTTGGCAGCCTTACCATTTTGCTTTTTAAGGGATCAGTCGGTGAACCGGCCCCCCCGGACCGATGCTCTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04962 map04962
Pfam Domains
Protein Families
Dynein_light

Protein Analysis

103

Amino Acids

11.2

Weight (kDa)

5.83

Isoelectric Point (pI)

19.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynein_light PF01221 5 - 89 1e-32 Dynein light chain type 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 166, 202, 277
AcsI RAATTY 1 cut(s) 140
AluBI AGCT 1 cut(s) 309
AluI AGCT 1 cut(s) 309
AlwI GGATC 3 cut(s) 166, 202, 277
AlwNI CAGNNNCTG 1 cut(s) 219
AoxI GGCC 2 cut(s) 72, 285
ApeKI GCWGC 2 cut(s) 219, 243
ApoI RAATTY 1 cut(s) 140
AspS9I GGNCC 2 cut(s) 286, 295
AsuC2I CCSGG 1 cut(s) 293
AsuHPI GGTGA 3 cut(s) 38, 94, 290
AvaII GGWCC 1 cut(s) 295
BbvI GCAGC 2 cut(s) 206, 255
BcnI CCSGG 1 cut(s) 293
BfaI CTAG 1 cut(s) 306
BisI GCNGC 2 cut(s) 220, 244
BlsI GCNGC 2 cut(s) 221, 245
Bme1390I CCNGG 1 cut(s) 293
Bme18I GGWCC 1 cut(s) 295
BmgT120I GGNCC 2 cut(s) 286, 295
BmiI GGNNCC 1 cut(s) 288
BmrFI CCNGG 1 cut(s) 293
BmsI GCATC 3 cut(s) 49, 183, 290
BpuMI CCSGG 1 cut(s) 293
BsaJI CCNNGG 1 cut(s) 291
Bse118I RCCGGY 1 cut(s) 283
Bse3DI GCAATG 1 cut(s) 208
BseDI CCNNGG 1 cut(s) 291
BseGI GGATG 1 cut(s) 225
BseMI GCAATG 1 cut(s) 208
BseMII CTCAG 1 cut(s) 249
BseXI GCAGC 2 cut(s) 206, 255
BshFI GGCC 2 cut(s) 74, 287
BsiSI CCGG 2 cut(s) 284, 293
BslFI GGGAC 1 cut(s) 196
BsmFI GGGAC 1 cut(s) 196
BsnI GGCC 2 cut(s) 74, 287
Bsp143I GATC 3 cut(s) 158, 194, 269
BspANI GGCC 2 cut(s) 74, 287
BspCNI CTCAG 1 cut(s) 248
BspLI GGNNCC 1 cut(s) 288
BspPI GGATC 3 cut(s) 166, 202, 277
BsrDI GCAATG 1 cut(s) 208
BsrFI RCCGGY 1 cut(s) 283
BssAI RCCGGY 1 cut(s) 283
BssECI CCNNGG 1 cut(s) 291
BssMI GATC 3 cut(s) 158, 194, 269
BstAPI GCANNNNNTGC 1 cut(s) 219
BstDEI CTNAG 2 cut(s) 65, 235
BstF5I GGATG 1 cut(s) 225
BstKTI GATC 3 cut(s) 161, 197, 272
BstMBI GATC 3 cut(s) 158, 194, 269
BstMWI GCNNNNNNNGC 2 cut(s) 80, 219
BstSCI CCNGG 1 cut(s) 291
BstV1I GCAGC 2 cut(s) 206, 255
BstX2I RGATCY 1 cut(s) 194
BstYI RGATCY 1 cut(s) 194
BsuRI GGCC 2 cut(s) 74, 287
BtsCI GGATG 1 cut(s) 225
BtsI GCAGTG 2 cut(s) 176, 220
BtsIMutI CAGTG 2 cut(s) 176, 220
CaiI CAGNNNCTG 1 cut(s) 219
Cfr10I RCCGGY 1 cut(s) 283
Cfr13I GGNCC 2 cut(s) 286, 295
CpoI CGGWCCG 1 cut(s) 295
CseI GACGC 1 cut(s) 193
CspI CGGWCCG 1 cut(s) 295
CviJI RGCY 6 cut(s) 74, 83, 219, 246, 287, 309
CviKI_1 RGCY 6 cut(s) 74, 83, 219, 246, 287, 309
DdeI CTNAG 2 cut(s) 65, 235
DpnI GATC 3 cut(s) 160, 196, 271
DpnII GATC 3 cut(s) 158, 194, 269
Eco47I GGWCC 1 cut(s) 295
FaiI YATR 1 cut(s) 38
FalI AAGNNNNNCTT 2 cut(s) 48, 80
FaqI GGGAC 1 cut(s) 196
Fnu4HI GCNGC 2 cut(s) 220, 244
FokI GGATG 1 cut(s) 212
Fsp4HI GCNGC 2 cut(s) 220, 244
FspBI CTAG 1 cut(s) 306
GluI GCNGC 2 cut(s) 220, 244
HaeIII GGCC 2 cut(s) 74, 287
HapII CCGG 2 cut(s) 284, 293
HgaI GACGC 1 cut(s) 193
HinfI GANTC 1 cut(s) 205
HpaII CCGG 2 cut(s) 284, 293
HphI GGTGA 3 cut(s) 38, 94, 290
Hpy166II GTNNAC 1 cut(s) 281
Hpy188I TCNGA 1 cut(s) 194
Hpy188III TCNNGA 2 cut(s) 133, 202
Hpy8I GTNNAC 1 cut(s) 281
HpyAV CCTTC 2 cut(s) 46, 130
HpyCH4V TGCA 2 cut(s) 174, 213
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 219
HpyF3I CTNAG 2 cut(s) 65, 235
Kzo9I GATC 3 cut(s) 158, 194, 269
LpnPI CCDG 2 cut(s) 297, 306
Lsp1109I GCAGC 2 cut(s) 206, 255
LweI GCATC 3 cut(s) 49, 183, 290
MaeI CTAG 1 cut(s) 306
MaeIII GTNAC 3 cut(s) 100, 152, 202
MalI GATC 3 cut(s) 160, 196, 271
MboI GATC 3 cut(s) 158, 194, 269
MboII GAAGA 1 cut(s) 68
MflI RGATCY 1 cut(s) 194
MluCI AATT 2 cut(s) 117, 140
MlyI GAGTC 1 cut(s) 199
MnlI CCTC 1 cut(s) 85
MseI TTAA 1 cut(s) 264
MslI CAYNNNNRTG 1 cut(s) 213
MspI CCGG 2 cut(s) 284, 293
MspR9I CCNGG 1 cut(s) 293
MwoI GCNNNNNNNGC 2 cut(s) 80, 219
NciI CCSGG 1 cut(s) 293
NdeII GATC 3 cut(s) 158, 194, 269
NlaIV GGNNCC 1 cut(s) 288
NmuCI GTSAC 2 cut(s) 100, 202
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PkrI GCNGC 2 cut(s) 221, 245
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 288
PspPI GGNCC 2 cut(s) 286, 295
PstNI CAGNNNCTG 1 cut(s) 219
PsuI RGATCY 1 cut(s) 194
RseI CAYNNNNRTG 1 cut(s) 213
Rsr2I CGGWCCG 1 cut(s) 295
RsrII CGGWCCG 1 cut(s) 295
SaqAI TTAA 1 cut(s) 264
SatI GCNGC 2 cut(s) 220, 244
Sau3AI GATC 3 cut(s) 158, 194, 269
Sau96I GGNCC 2 cut(s) 286, 295
SchI GAGTC 1 cut(s) 199
ScrFI CCNGG 1 cut(s) 293
SetI ASST 2 cut(s) 112, 311
SfaNI GCATC 3 cut(s) 49, 183, 290
SgeI CNNG 9 cut(s) 98, 135, 145, 174, 190, 214, 296, 304, 305
SinI GGWCC 1 cut(s) 295
SmiMI CAYNNNNRTG 1 cut(s) 213
Sse9I AATT 2 cut(s) 117, 140
SspMI CTAG 1 cut(s) 306
StyD4I CCNGG 1 cut(s) 291
TaqII GACCGA 1 cut(s) 312
TasI AATT 2 cut(s) 117, 140
Tru1I TTAA 1 cut(s) 264
Tru9I TTAA 1 cut(s) 264
TscAI CASTG 2 cut(s) 176, 220
TseFI GTSAC 2 cut(s) 100, 202
TseI GCWGC 2 cut(s) 219, 243
Tsp45I GTSAC 2 cut(s) 100, 202
TspDTI ATGAA 4 cut(s) 53, 65, 118, 214
TspGWI ACGGA 1 cut(s) 171
TspRI CASTG 2 cut(s) 176, 220
VpaK11BI GGWCC 1 cut(s) 295
XapI RAATTY 1 cut(s) 140
XcmI CCANNNNNNNNNTGG 1 cut(s) 236
XspI CTAG 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.