pycom05g30010

Dynein light chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0005787
Physical Location & Seq
Reverse (-)
30271732 .. 30272160
429 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g30010.1

Sequence Viewer

Length: 330 bp
ATGTTGGAAGGCAAAGCCGTCGTCAATGAGACTGATATGCTTCAAACAATGCAGCAAGACGCTCTCCAGTTAGCTGCAAGGGCTCTCGATAACTTCGATGTCACTGAACCCACTGAGATTGCCCAATTCATAAAGAAGGAATTTGATGACACGTACGGGGTGGGGTGGCAGTGCATCGTAGGAACAGATTTTGGTTCGTTTGTGACGCACAGCCAAGGCTGCTTCATCTATTTCTTCGTCGGTAGCCTTGCATTCTTGCTTTTCAGGGGAACAACCAATCTCGCTGTGGAGACAAATAACATCCTGCCGTTGGAGGCCGTGACGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04962 map04962
Pfam Domains
Protein Families
Dynein_light

Protein Analysis

110

Amino Acids

12.05

Weight (kDa)

4.14

Isoelectric Point (pI)

20.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynein_light PF01221 5 - 89 1.3e-34 Dynein light chain type 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 140
AfaI GTAC 1 cut(s) 155
AfiI CCNNNNNNNGG 1 cut(s) 310
AflIII ACRYGT 1 cut(s) 150
AgsI TTSAA 1 cut(s) 44
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
Alw26I GTCTC 2 cut(s) 23, 284
AoxI GGCC 1 cut(s) 315
ApeKI GCWGC 3 cut(s) 52, 74, 219
ApoI RAATTY 1 cut(s) 140
ArsI GACNNNNNNTTYG 1 cut(s) 38
BanII GRGCYC 1 cut(s) 85
BbvI GCAGC 3 cut(s) 61, 64, 206
BceAI ACGGC 3 cut(s) 2, 292, 302
BcgI CGANNNNNNTGC 1 cut(s) 35
BcoDI GTCTC 2 cut(s) 23, 284
BglI GCCNNNNNGGC 1 cut(s) 323
BisI GCNGC 3 cut(s) 53, 75, 220
BlsI GCNGC 3 cut(s) 54, 76, 221
BmsI GCATC 1 cut(s) 183
BpmI CTGGAG 1 cut(s) 50
BsaAI YACGTR 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 214
Bsc4I CCNNNNNNNGG 1 cut(s) 310
Bse1I ACTGG 1 cut(s) 67
BseDI CCNNGG 1 cut(s) 214
BseGI GGATG 1 cut(s) 300
BseLI CCNNNNNNNGG 1 cut(s) 310
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 67
BseXI GCAGC 3 cut(s) 61, 64, 206
BshFI GGCC 1 cut(s) 317
BsiWI CGTACG 1 cut(s) 153
BslI CCNNNNNNNGG 1 cut(s) 310
BsmAI GTCTC 2 cut(s) 23, 284
BsmI GAATGC 1 cut(s) 251
BsnI GGCC 1 cut(s) 317
Bsp1286I GDGCHC 1 cut(s) 85
BspANI GGCC 1 cut(s) 317
BspCNI CTCAG 1 cut(s) 106
BsrI ACTGG 1 cut(s) 67
BssECI CCNNGG 1 cut(s) 214
BssT1I CCWWGG 1 cut(s) 214
BstBAI YACGTR 1 cut(s) 153
BstDEI CTNAG 1 cut(s) 114
BstF5I GGATG 1 cut(s) 300
BstMAI GTCTC 2 cut(s) 23, 284
BstMWI GCNNNNNNNGC 3 cut(s) 80, 219, 323
BstV1I GCAGC 3 cut(s) 61, 64, 206
BsuRI GGCC 1 cut(s) 317
BtsCI GGATG 1 cut(s) 300
BtsI GCAGTG 1 cut(s) 176
BtsIMutI CAGTG 3 cut(s) 102, 111, 176
CseI GACGC 2 cut(s) 68, 214
Csp6I GTAC 1 cut(s) 154
CspCI CAANNNNNGTGG 2 cut(s) 100, 135
CviJI RGCY 7 cut(s) 17, 74, 83, 213, 219, 246, 317
CviKI_1 RGCY 7 cut(s) 17, 74, 83, 213, 219, 246, 317
CviQI GTAC 1 cut(s) 154
DdeI CTNAG 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 214
Eco24I GRGCYC 1 cut(s) 85
EcoT14I CCWWGG 1 cut(s) 214
EcoT38I GRGCYC 1 cut(s) 85
ErhI CCWWGG 1 cut(s) 214
FaiI YATR 3 cut(s) 38, 131, 328
Fnu4HI GCNGC 3 cut(s) 53, 75, 220
FokI GGATG 1 cut(s) 287
FriOI GRGCYC 1 cut(s) 85
Fsp4HI GCNGC 3 cut(s) 53, 75, 220
GluI GCNGC 3 cut(s) 53, 75, 220
GsuI CTGGAG 1 cut(s) 50
HaeIII GGCC 1 cut(s) 317
HgaI GACGC 2 cut(s) 68, 214
Hpy188III TCNNGA 1 cut(s) 86
Hpy99I CGWCG 2 cut(s) 23, 242
HpyAV CCTTC 1 cut(s) 130
HpyCH4IV ACGT 1 cut(s) 152
HpyCH4V TGCA 4 cut(s) 52, 77, 174, 251
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 219, 323
HpyF3I CTNAG 1 cut(s) 114
HpySE526I ACGT 1 cut(s) 152
LpnPI CCDG 3 cut(s) 80, 250, 317
Lsp1109I GCAGC 3 cut(s) 61, 64, 206
LweI GCATC 1 cut(s) 183
MaeII ACGT 1 cut(s) 152
MaeIII GTNAC 3 cut(s) 100, 202, 319
MboII GAAGA 1 cut(s) 226
MhlI GDGCHC 1 cut(s) 85
MluCI AATT 2 cut(s) 125, 140
MmeI TCCRAC 1 cut(s) 291
MnlI CCTC 1 cut(s) 307
Mva1269I GAATGC 1 cut(s) 251
MwoI GCNNNNNNNGC 3 cut(s) 80, 219, 323
NmuCI GTSAC 3 cut(s) 100, 202, 319
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 1 cut(s) 251
Pfl23II CGTACG 1 cut(s) 153
PkrI GCNGC 3 cut(s) 54, 76, 221
Ppu21I YACGTR 1 cut(s) 153
PspLI CGTACG 1 cut(s) 153
RsaI GTAC 1 cut(s) 155
RsaNI GTAC 1 cut(s) 154
SatI GCNGC 3 cut(s) 53, 75, 220
SduI GDGCHC 1 cut(s) 85
SetI ASST 2 cut(s) 76, 155
SfaNI GCATC 1 cut(s) 183
Sse9I AATT 2 cut(s) 125, 140
StyI CCWWGG 1 cut(s) 214
TaiI ACGT 1 cut(s) 155
TaqI TCGA 2 cut(s) 87, 96
TasI AATT 2 cut(s) 125, 140
TscAI CASTG 3 cut(s) 109, 118, 176
TseFI GTSAC 3 cut(s) 100, 202, 319
TseI GCWGC 3 cut(s) 52, 74, 219
Tsp45I GTSAC 3 cut(s) 100, 202, 319
TspDTI ATGAA 2 cut(s) 118, 214
TspRI CASTG 3 cut(s) 109, 118, 176
XapI RAATTY 1 cut(s) 140
XcmI CCANNNNNNNNNTGG 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.