pycom11g20720

Dynein light chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0005787
Physical Location & Seq
Forward (+)
23827321 .. 23828033
713 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g20720.1

Sequence Viewer

Length: 336 bp
ATGTTGGAGGGCAAATCAGTCATCGTTGAGACTGACATGCTTCAAACCATGCAGCAGAAGGCACTTGACTTAGCTTCCAAAGCCCTTGATTCCTTTGATATCACTGAAGCCACTGAGATAGGCCGCTTCATTAAAATGGAGTTTGACAGGACATATGGACCTGGATGGCAGTGCATTGTAGGAACAGATTTTGGTTCCTTTGTTACACATTGCCAAGGTTGTTTCATCTATTTTTACATGGGCACCCTTGCAGTTTTGCTGTTCAGGGGAGCTGCAGGTCCAGAAGCTAAGGCAAAGCAGCCGTGTGCAGCGGCATTGGAGCCAGTACAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04962 map04962
Pfam Domains
Protein Families
Dynein_light

Protein Analysis

112

Amino Acids

12.14

Weight (kDa)

4.81

Isoelectric Point (pI)

31.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynein_light PF01221 6 - 89 2.5e-33 Dynein light chain type 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 266
AccB1I GGYRCC 1 cut(s) 242
AciI CCGC 2 cut(s) 124, 311
AcuI CTGAAG 1 cut(s) 126
AfaI GTAC 1 cut(s) 327
AgsI TTSAA 1 cut(s) 44
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 3 cut(s) 74, 272, 287
AluI AGCT 3 cut(s) 74, 272, 287
Alw26I GTCTC 1 cut(s) 23
AoxI GGCC 1 cut(s) 121
ApeKI GCWGC 4 cut(s) 52, 272, 298, 308
AspS9I GGNCC 2 cut(s) 158, 278
AvaII GGWCC 2 cut(s) 158, 278
BaeGI GKGCMC 1 cut(s) 245
BanI GGYRCC 1 cut(s) 242
BbvI GCAGC 4 cut(s) 64, 259, 310, 320
BccI CCATC 1 cut(s) 159
BceAI ACGGC 1 cut(s) 286
BciT130I CCWGG 1 cut(s) 162
BcoDI GTCTC 1 cut(s) 23
BfmI CTRYAG 1 cut(s) 273
BfuAI ACCTGC 1 cut(s) 266
BisI GCNGC 6 cut(s) 53, 124, 273, 299, 309, 312
BlsI GCNGC 6 cut(s) 54, 125, 274, 300, 310, 313
Bme1390I CCNGG 1 cut(s) 162
Bme18I GGWCC 2 cut(s) 158, 278
BmgT120I GGNCC 2 cut(s) 158, 278
BmiI GGNNCC 3 cut(s) 196, 244, 321
BmrFI CCNGG 1 cut(s) 162
Bpu10I CCTNAGC 1 cut(s) 288
BsaJI CCNNGG 1 cut(s) 214
Bse1I ACTGG 1 cut(s) 323
Bse3DI GCAATG 1 cut(s) 208
BseBI CCWGG 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 214
BseGI GGATG 1 cut(s) 170
BseMI GCAATG 1 cut(s) 208
BseMII CTCAG 1 cut(s) 105
BseNI ACTGG 1 cut(s) 323
BseSI GKGCMC 1 cut(s) 245
BseXI GCAGC 4 cut(s) 64, 259, 310, 320
BsgI GTGCAG 1 cut(s) 327
BshFI GGCC 1 cut(s) 123
BshNI GGYRCC 1 cut(s) 242
BsmAI GTCTC 1 cut(s) 23
BsnI GGCC 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 245
BspACI CCGC 2 cut(s) 124, 311
BspANI GGCC 1 cut(s) 123
BspCNI CTCAG 1 cut(s) 106
BspLI GGNNCC 3 cut(s) 196, 244, 321
BspMAI CTGCAG 1 cut(s) 277
BspMI ACCTGC 1 cut(s) 266
BspT107I GGYRCC 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 208
BsrI ACTGG 1 cut(s) 323
BssECI CCNNGG 1 cut(s) 214
BssT1I CCWWGG 1 cut(s) 214
Bst2UI CCWGG 1 cut(s) 162
BstDEI CTNAG 3 cut(s) 70, 114, 288
BstF5I GGATG 1 cut(s) 170
BstMAI GTCTC 1 cut(s) 23
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstNI CCWGG 1 cut(s) 162
BstNSI RCATGY 1 cut(s) 40
BstSCI CCNGG 1 cut(s) 160
BstSFI CTRYAG 1 cut(s) 273
BstSLI GKGCMC 1 cut(s) 245
BstV1I GCAGC 4 cut(s) 64, 259, 310, 320
BsuRI GGCC 1 cut(s) 123
BtsCI GGATG 1 cut(s) 170
BtsI GCAGTG 1 cut(s) 176
BtsIMutI CAGTG 3 cut(s) 102, 111, 176
BveI ACCTGC 1 cut(s) 266
Cfr13I GGNCC 2 cut(s) 158, 278
Csp6I GTAC 1 cut(s) 326
CviAII CATG 4 cut(s) 37, 49, 238, 333
CviJI RGCY 8 cut(s) 74, 83, 110, 123, 272, 287, 301, 322
CviKI_1 RGCY 8 cut(s) 74, 83, 110, 123, 272, 287, 301, 322
CviQI GTAC 1 cut(s) 326
DdeI CTNAG 3 cut(s) 70, 114, 288
Eco130I CCWWGG 1 cut(s) 214
Eco32I GATATC 1 cut(s) 100
Eco47I GGWCC 2 cut(s) 158, 278
Eco57I CTGAAG 1 cut(s) 126
EcoRII CCWGG 1 cut(s) 160
EcoRV GATATC 1 cut(s) 100
EcoT14I CCWWGG 1 cut(s) 214
ErhI CCWWGG 1 cut(s) 214
FaeI CATG 4 cut(s) 40, 52, 241, 336
FaiI YATR 6 cut(s) 38, 50, 154, 156, 239, 334
FatI CATG 4 cut(s) 36, 48, 237, 332
FauNDI CATATG 1 cut(s) 154
Fnu4HI GCNGC 6 cut(s) 53, 124, 273, 299, 309, 312
FokI GGATG 1 cut(s) 177
Fsp4HI GCNGC 6 cut(s) 53, 124, 273, 299, 309, 312
GluI GCNGC 6 cut(s) 53, 124, 273, 299, 309, 312
HaeIII GGCC 1 cut(s) 123
Hin1II CATG 4 cut(s) 40, 52, 241, 336
HinfI GANTC 1 cut(s) 89
Hpy188III TCNNGA 1 cut(s) 281
HpyAV CCTTC 1 cut(s) 52
HpyCH4V TGCA 5 cut(s) 52, 174, 251, 275, 308
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 3 cut(s) 70, 114, 288
Hsp92II CATG 4 cut(s) 40, 52, 241, 336
LmnI GCTCC 2 cut(s) 269, 319
LpnPI CCDG 6 cut(s) 133, 147, 174, 250, 261, 294
Lsp1109I GCAGC 4 cut(s) 64, 259, 310, 320
MaeIII GTNAC 1 cut(s) 202
MhlI GDGCHC 1 cut(s) 245
MseI TTAA 1 cut(s) 132
MslI CAYNNNNRTG 1 cut(s) 134
MspA1I CMGCKG 1 cut(s) 311
MspR9I CCNGG 1 cut(s) 162
MvaI CCWGG 1 cut(s) 162
MwoI GCNNNNNNNGC 1 cut(s) 80
NdeI CATATG 1 cut(s) 154
NlaIII CATG 4 cut(s) 40, 52, 241, 336
NlaIV GGNNCC 3 cut(s) 196, 244, 321
NspI RCATGY 1 cut(s) 40
PfeI GAWTC 1 cut(s) 89
PkrI GCNGC 6 cut(s) 54, 125, 274, 300, 310, 313
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PspN4I GGNNCC 3 cut(s) 196, 244, 321
PspPI GGNCC 2 cut(s) 158, 278
PstI CTGCAG 1 cut(s) 277
RsaI GTAC 1 cut(s) 327
RsaNI GTAC 1 cut(s) 326
RseI CAYNNNNRTG 1 cut(s) 134
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 6 cut(s) 53, 124, 273, 299, 309, 312
Sau96I GGNCC 2 cut(s) 158, 278
ScrFI CCNGG 1 cut(s) 162
SduI GDGCHC 1 cut(s) 245
SetI ASST 6 cut(s) 76, 163, 220, 274, 280, 289
SfcI CTRYAG 1 cut(s) 273
SinI GGWCC 2 cut(s) 158, 278
SmiMI CAYNNNNRTG 1 cut(s) 134
SsiI CCGC 2 cut(s) 124, 311
StyD4I CCNGG 1 cut(s) 160
StyI CCWWGG 1 cut(s) 214
TatI WGTACW 1 cut(s) 325
TauI GCSGC 2 cut(s) 126, 314
TfiI GAWTC 1 cut(s) 89
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 3 cut(s) 109, 118, 176
TseI GCWGC 4 cut(s) 52, 272, 298, 308
TspDTI ATGAA 2 cut(s) 118, 214
TspRI CASTG 3 cut(s) 109, 118, 176
VpaK11BI GGWCC 2 cut(s) 158, 278
XceI RCATGY 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.