Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005787

Physical Location & Seq

Genomic Coordinates Reverse (-)

1769235 .. 1771149

Gene Structure 1915 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G037500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGTTAGAAGGCAAAGCCGTCGTTAACGAGACTGACATGCTTCAAACAATGCAGCAAGACGCGCTCGATTTAGCTGCAAAGGCTCTCGATATATTTGATATCACTGAACCTACTGAAATCGCCCAATTCATAAAGAAGGAATTCGATGAGTCATACGGGACTGGGTGGCAGTGCATAGTAGGAACAGATTTTGGTTCGTTTGTGACACACAGCCAAGGCTGCTTCATCCATTTCTTGATTGGTAGCCTTGCTTTCTTGGTTTTCAGGGGTACGGCCAATCTTGCTGCTGAAGCAAATAGGATCCCGCCATTGGAAGCTGTGAAGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

110

Amino Acids

11.93

Weight (kDa)

4.46

Isoelectric Point (pI)

20.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27360
fragaria_vesca	FvH4_3g03950 FvH4_3g21070
malus_domestica	MD05G1325900.v1.1 MD10G1303800.v1.1
prunus_persica	Prupe.4G037500_v2.0.a1 Prupe.4G191300_v2.0.a1
pyrus_communis	pycom05g30010 pycom11g20720
rosa_chinensis	RchiOBHm_Chr5g0006281 RchiOBHm_Chr5g0036101
rosa_laevigata	RLG00000031368 RLG00000033665
rosa_multiflora	Rmu_sc0009466.1_g000003
rosa_roxburghii	Rroxscaffold_1G00044640 Rroxscaffold_1G00069710
rosa_rugosa	Rorug04G0420700 Rorug05G0152700
rosa_samantha	Rh5AG048700 Rh5AG246900 Rh5BG047600 Rh5BG247300 Rh5CG056000 Rh5CG278300 Rh5DG046800 Rh5DG255800
rosa_wichuraiana	Rw5G004840 Rw5G022660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	62
AciI	CCGC	1 cut(s)	305
AclWI	GGATC	2 cut(s)	295, 308
AcoI	YGGCCR	1 cut(s)	273
AcsI	RAATTY	1 cut(s)	140
AcuI	CTGAAG	1 cut(s)	309
AfaI	GTAC	1 cut(s)	271
AfiI	CCNNNNNNNGG	1 cut(s)	310
AgsI	TTSAA	1 cut(s)	44
AluBI	AGCT	2 cut(s)	74, 317
AluI	AGCT	2 cut(s)	74, 317
Alw26I	GTCTC	1 cut(s)	23
AlwI	GGATC	2 cut(s)	295, 308
AoxI	GGCC	1 cut(s)	273
ApeKI	GCWGC	4 cut(s)	52, 74, 219, 284
ApoI	RAATTY	1 cut(s)	140
Asp700I	GAANNNNTTC	1 cut(s)	140
AspLEI	GCGC	1 cut(s)	64
BamHI	GGATCC	1 cut(s)	300
BbvI	GCAGC	4 cut(s)	61, 64, 206, 271
BceAI	ACGGC	2 cut(s)	2, 288
BcgI	CGANNNNNNTGC	3 cut(s)	35, 56, 90
BcoDI	GTCTC	1 cut(s)	23
BisI	GCNGC	4 cut(s)	53, 75, 220, 285
BlsI	GCNGC	4 cut(s)	54, 76, 221, 286
BmiI	GGNNCC	1 cut(s)	302
BmrI	ACTGGG	1 cut(s)	171
BmuI	ACTGGG	1 cut(s)	171
BsaJI	CCNNGG	1 cut(s)	214
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
Bse1I	ACTGG	1 cut(s)	166
BseDI	CCNNGG	1 cut(s)	214
BseGI	GGATG	1 cut(s)	225
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseNI	ACTGG	1 cut(s)	166
BseXI	GCAGC	4 cut(s)	61, 64, 206, 271
Bsh1236I	CGCG	1 cut(s)	62
BshFI	GGCC	1 cut(s)	275
BslFI	GGGAC	1 cut(s)	172
BslI	CCNNNNNNNGG	1 cut(s)	310
BsmAI	GTCTC	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	172
BsnI	GGCC	1 cut(s)	275
Bsp143I	GATC	1 cut(s)	300
BspACI	CCGC	1 cut(s)	305
BspANI	GGCC	1 cut(s)	275
BspFNI	CGCG	1 cut(s)	62
BspLI	GGNNCC	1 cut(s)	302
BspPI	GGATC	2 cut(s)	295, 308
BsrI	ACTGG	1 cut(s)	166
BssECI	CCNNGG	1 cut(s)	214
BssMI	GATC	1 cut(s)	300
BssT1I	CCWWGG	1 cut(s)	214
BstF5I	GGATG	1 cut(s)	225
BstFNI	CGCG	1 cut(s)	62
BstHHI	GCGC	1 cut(s)	64
BstKTI	GATC	1 cut(s)	303
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	1 cut(s)	300
BstMWI	GCNNNNNNNGC	6 cut(s)	61, 80, 219, 281, 290, 323
BstNSI	RCATGY	1 cut(s)	40
BstUI	CGCG	1 cut(s)	62
BstV1I	GCAGC	4 cut(s)	61, 64, 206, 271
BstX2I	RGATCY	1 cut(s)	300
BstYI	RGATCY	1 cut(s)	300
BsuRI	GGCC	1 cut(s)	275
BtsCI	GGATG	1 cut(s)	225
BtsI	GCAGTG	1 cut(s)	176
BtsIMutI	CAGTG	2 cut(s)	102, 176
CfoI	GCGC	1 cut(s)	64
CseI	GACGC	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	270
CviAII	CATG	1 cut(s)	37
CviJI	RGCY	8 cut(s)	17, 74, 83, 213, 219, 246, 275, 317
CviKI_1	RGCY	8 cut(s)	17, 74, 83, 213, 219, 246, 275, 317
CviQI	GTAC	1 cut(s)	270
DpnI	GATC	1 cut(s)	302
DpnII	GATC	1 cut(s)	300
EaeI	YGGCCR	1 cut(s)	273
Eco130I	CCWWGG	1 cut(s)	214
Eco32I	GATATC	1 cut(s)	100
Eco57I	CTGAAG	1 cut(s)	309
EcoRI	GAATTC	1 cut(s)	140
EcoRV	GATATC	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	214
ErhI	CCWWGG	1 cut(s)	214
FaeI	CATG	1 cut(s)	40
FaiI	YATR	6 cut(s)	38, 92, 131, 154, 176, 328
FaqI	GGGAC	1 cut(s)	172
FatI	CATG	1 cut(s)	36
FauI	CCCGC	1 cut(s)	312
Fnu4HI	GCNGC	4 cut(s)	53, 75, 220, 285
FokI	GGATG	1 cut(s)	212
Fsp4HI	GCNGC	4 cut(s)	53, 75, 220, 285
GlaI	GCGC	1 cut(s)	63
GluI	GCNGC	4 cut(s)	53, 75, 220, 285
HaeIII	GGCC	1 cut(s)	275
HgaI	GACGC	1 cut(s)	68
HhaI	GCGC	1 cut(s)	64
Hin1II	CATG	1 cut(s)	40
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	1 cut(s)	149
HpaI	GTTAAC	1 cut(s)	25
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188III	TCNNGA	2 cut(s)	86, 235
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	1 cut(s)	23
HpyAV	CCTTC	2 cut(s)	130, 316
HpyCH4V	TGCA	3 cut(s)	52, 77, 174
HpyF10VI	GCNNNNNNNGC	6 cut(s)	61, 80, 219, 281, 290, 323
Hsp92II	CATG	1 cut(s)	40
HspAI	GCGC	1 cut(s)	62
KspAI	GTTAAC	1 cut(s)	25
Kzo9I	GATC	1 cut(s)	300
LpnPI	CCDG	2 cut(s)	147, 250
Lsp1109I	GCAGC	4 cut(s)	61, 64, 206, 271
MaeIII	GTNAC	1 cut(s)	202
MalI	GATC	1 cut(s)	302
MboI	GATC	1 cut(s)	300
MflI	RGATCY	1 cut(s)	300
MluCI	AATT	2 cut(s)	125, 140
MlyI	GAGTC	1 cut(s)	158
MroXI	GAANNNNTTC	1 cut(s)	140
MseI	TTAA	1 cut(s)	24
MvnI	CGCG	1 cut(s)	62
MwoI	GCNNNNNNNGC	6 cut(s)	61, 80, 219, 281, 290, 323
NdeII	GATC	1 cut(s)	300
NlaIII	CATG	1 cut(s)	40
NlaIV	GGNNCC	1 cut(s)	302
NmuCI	GTSAC	1 cut(s)	202
NspI	RCATGY	1 cut(s)	40
PdmI	GAANNNNTTC	1 cut(s)	140
PkrI	GCNGC	4 cut(s)	54, 76, 221, 286
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PspN4I	GGNNCC	1 cut(s)	302
PsuI	RGATCY	1 cut(s)	300
RsaI	GTAC	1 cut(s)	271
RsaNI	GTAC	1 cut(s)	270
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	4 cut(s)	53, 75, 220, 285
Sau3AI	GATC	1 cut(s)	300
SchI	GAGTC	1 cut(s)	158
SetI	ASST	3 cut(s)	76, 112, 319
Sse9I	AATT	2 cut(s)	125, 140
SsiI	CCGC	1 cut(s)	305
StyI	CCWWGG	1 cut(s)	214
TaqI	TCGA	3 cut(s)	66, 87, 144
TasI	AATT	2 cut(s)	125, 140
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TscAI	CASTG	2 cut(s)	109, 176
TseFI	GTSAC	1 cut(s)	202
TseI	GCWGC	4 cut(s)	52, 74, 219, 284
Tsp45I	GTSAC	1 cut(s)	202
TspDTI	ATGAA	2 cut(s)	118, 214
TspRI	CASTG	2 cut(s)	109, 176
XapI	RAATTY	1 cut(s)	140
XceI	RCATGY	1 cut(s)	40
XcmI	CCANNNNNNNNNTGG	1 cut(s)	236
XmnI	GAANNNNTTC	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.