Rorug04G0420700

Dynein light chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0005787
Physical Location & Seq
Reverse (-)
58080745 .. 58081017
273 bp
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UTR
Exon/CDS
Intron
Rorug04G0420700.1

Sequence Viewer

Length: 273 bp
ATGGTGGATTCATTCTACTGGGCAATGGAGAAAGCAGAGTACCGAAATGTGAGTATCGTGGTGTCTGAGACTGGCTGGCCTCGCACTGGCACTATCCCAGAAGTCGCAGAAACATATAACCGGAACTTGGTGAAACGGATGAAGTCAGGAGTGGGAACCCCCAAAAGACCTAACGATACTTTTGGAGCGTTTATATATGCGTACCACGATGGGCCACATGATTCTTTTGGAGTTTTCGATCCAAACCACACCGACCGGCCTTTTTATGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04962 map04962
Pfam Domains
Protein Families
Dynein_light

Protein Analysis

90

Amino Acids

10.31

Weight (kDa)

6.26

Isoelectric Point (pI)

34.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_hydro_17 PF00332 1 - 83 5.3e-16 Glycosyl hydrolases family 17
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 233
AfaI GTAC 2 cut(s) 41, 203
AfiI CCNNNNNNNGG 2 cut(s) 86, 127
Alw26I GTCTC 1 cut(s) 62
AlwI GGATC 1 cut(s) 233
AoxI GGCC 3 cut(s) 77, 212, 257
AspS9I GGNCC 1 cut(s) 212
AsuHPI GGTGA 1 cut(s) 142
BccI CCATC 1 cut(s) 203
BcoDI GTCTC 1 cut(s) 62
BmgT120I GGNCC 1 cut(s) 212
BmiI GGNNCC 1 cut(s) 157
BmrI ACTGGG 1 cut(s) 28
BmuI ACTGGG 1 cut(s) 28
BsaWI WCCGGW 1 cut(s) 120
Bsc4I CCNNNNNNNGG 2 cut(s) 86, 127
Bse118I RCCGGY 1 cut(s) 255
Bse1I ACTGG 3 cut(s) 23, 76, 91
Bse3DI GCAATG 1 cut(s) 30
BseGI GGATG 1 cut(s) 144
BseLI CCNNNNNNNGG 2 cut(s) 86, 127
BseMI GCAATG 1 cut(s) 30
BseMII CTCAG 1 cut(s) 57
BseNI ACTGG 3 cut(s) 23, 76, 91
Bsh1285I CGRYCG 1 cut(s) 256
BshFI GGCC 3 cut(s) 79, 214, 259
BsiEI CGRYCG 1 cut(s) 256
BsiSI CCGG 2 cut(s) 121, 256
BslI CCNNNNNNNGG 2 cut(s) 86, 127
BsmAI GTCTC 1 cut(s) 62
BsnI GGCC 3 cut(s) 79, 214, 259
Bsp143I GATC 1 cut(s) 238
BspANI GGCC 3 cut(s) 79, 214, 259
BspCNI CTCAG 1 cut(s) 58
BspLI GGNNCC 1 cut(s) 157
BspPI GGATC 1 cut(s) 233
BsrDI GCAATG 1 cut(s) 30
BsrFI RCCGGY 1 cut(s) 255
BsrI ACTGG 3 cut(s) 23, 76, 91
BssAI RCCGGY 1 cut(s) 255
BssMI GATC 1 cut(s) 238
BstC8I GCNNGC 1 cut(s) 77
BstDEI CTNAG 1 cut(s) 66
BstF5I GGATG 1 cut(s) 144
BstKTI GATC 1 cut(s) 241
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 1 cut(s) 238
BstMCI CGRYCG 1 cut(s) 256
BstMWI GCNNNNNNNGC 1 cut(s) 81
BsuRI GGCC 3 cut(s) 79, 214, 259
BtsCI GGATG 1 cut(s) 144
BtsIMutI CAGTG 1 cut(s) 84
Cac8I GCNNGC 1 cut(s) 77
Cfr10I RCCGGY 1 cut(s) 255
Cfr13I GGNCC 1 cut(s) 212
Csp6I GTAC 2 cut(s) 40, 202
CviAII CATG 1 cut(s) 218
CviJI RGCY 4 cut(s) 75, 79, 214, 259
CviKI_1 RGCY 4 cut(s) 75, 79, 214, 259
CviQI GTAC 2 cut(s) 40, 202
DdeI CTNAG 1 cut(s) 66
DpnI GATC 1 cut(s) 240
DpnII GATC 1 cut(s) 238
EcoT22I ATGCAT 1 cut(s) 271
FaeI CATG 1 cut(s) 221
FaiI YATR 8 cut(s) 115, 117, 194, 196, 198, 219, 267, 271
FatI CATG 1 cut(s) 217
FokI GGATG 1 cut(s) 151
HaeIII GGCC 3 cut(s) 79, 214, 259
HapII CCGG 2 cut(s) 121, 256
Hin1II CATG 1 cut(s) 221
HinfI GANTC 2 cut(s) 8, 221
HpaII CCGG 2 cut(s) 121, 256
HphI GGTGA 1 cut(s) 142
Hpy188I TCNGA 1 cut(s) 67
Hpy188III TCNNGA 1 cut(s) 147
HpyCH4V TGCA 1 cut(s) 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 81
HpyF3I CTNAG 1 cut(s) 66
Hsp92II CATG 1 cut(s) 221
Kzo9I GATC 1 cut(s) 238
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 8 cut(s) 4, 57, 61, 72, 111, 132, 134, 269
MalI GATC 1 cut(s) 240
MboI GATC 1 cut(s) 238
MnlI CCTC 1 cut(s) 90
Mph1103I ATGCAT 1 cut(s) 271
MspI CCGG 2 cut(s) 121, 256
MwoI GCNNNNNNNGC 1 cut(s) 81
NdeII GATC 1 cut(s) 238
NlaIII CATG 1 cut(s) 221
NlaIV GGNNCC 1 cut(s) 157
NsiI ATGCAT 1 cut(s) 271
PfeI GAWTC 2 cut(s) 8, 221
PspN4I GGNNCC 1 cut(s) 157
PspPI GGNCC 1 cut(s) 212
RsaI GTAC 2 cut(s) 41, 203
RsaNI GTAC 2 cut(s) 40, 202
Sau3AI GATC 1 cut(s) 238
Sau96I GGNCC 1 cut(s) 212
SetI ASST 1 cut(s) 172
TaqI TCGA 1 cut(s) 237
TfiI GAWTC 2 cut(s) 8, 221
TscAI CASTG 1 cut(s) 91
TspDTI ATGAA 1 cut(s) 155
TspGWI ACGGA 1 cut(s) 151
TspRI CASTG 1 cut(s) 91
Zsp2I ATGCAT 1 cut(s) 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.