FvH4_3g03950

Dynein light chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0005787
Physical Location & Seq
Forward (+)
2207665 .. 2208496
832 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g03950.t1

Sequence Viewer

Length: 336 bp
ATGTTAGAAGGAAAAGCAGTAGTAAACGAGACTGATATGCTTGAAACAATGCAGCAAGAAGCACTCCAACTAGCTGCCAAGGCTCTTGACCTCTTTGATGTCACTGAACCTACTGAAATAGCTCAATTCATAAAGAAGGATTTCGATGAATCATATGGAGCAGGGTGGCAATGCATAGTGGGAACAGATTTTGGTTCGTTTGTGACACACAGCCAGGGGTGTTTTATCTATTTCTGCATAGGTAGCCTTGCATTCTTGCTCTTCAGGGGTGCGGCTAATCTAGCCACTTCGGCAGAGCTAAATAGTATTCCGACATTGGAGGCTGTAAATGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04962 map04962
Pfam Domains
Protein Families
Dynein_light

Protein Analysis

112

Amino Acids

12.05

Weight (kDa)

4.13

Isoelectric Point (pI)

17.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynein_light PF01221 5 - 89 1.5e-34 Dynein light chain type 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 272
AcuI CTGAAG 1 cut(s) 247
AgsI TTSAA 1 cut(s) 44
AjnI CCWGG 1 cut(s) 213
AluBI AGCT 3 cut(s) 74, 122, 298
AluI AGCT 3 cut(s) 74, 122, 298
Alw26I GTCTC 1 cut(s) 23
ApeKI GCWGC 2 cut(s) 52, 74
Asp700I GAANNNNTTC 1 cut(s) 140
BbvI GCAGC 2 cut(s) 61, 64
BciT130I CCWGG 1 cut(s) 215
BcoDI GTCTC 1 cut(s) 23
BfaI CTAG 2 cut(s) 71, 281
BglI GCCNNNNNGGC 1 cut(s) 290
BisI GCNGC 3 cut(s) 53, 75, 273
BlsI GCNGC 3 cut(s) 54, 76, 274
Bme1390I CCNGG 1 cut(s) 215
BmrFI CCNGG 1 cut(s) 215
BsaJI CCNNGG 2 cut(s) 78, 214
Bse3DI GCAATG 1 cut(s) 176
BseBI CCWGG 1 cut(s) 215
BseDI CCNNGG 2 cut(s) 78, 214
BseMI GCAATG 1 cut(s) 176
BseXI GCAGC 2 cut(s) 61, 64
BsmAI GTCTC 1 cut(s) 23
BsmI GAATGC 1 cut(s) 251
BspACI CCGC 1 cut(s) 272
BspQI GCTCTTC 1 cut(s) 266
BsrDI GCAATG 1 cut(s) 176
BssECI CCNNGG 2 cut(s) 78, 214
BssT1I CCWWGG 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 215
Bst6I CTCTTC 1 cut(s) 266
BstMAI GTCTC 1 cut(s) 23
BstMWI GCNNNNNNNGC 5 cut(s) 80, 243, 281, 290, 329
BstNI CCWGG 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 213
BstV1I GCAGC 2 cut(s) 61, 64
BtsIMutI CAGTG 1 cut(s) 102
CviJI RGCY 9 cut(s) 74, 83, 122, 213, 246, 275, 284, 298, 323
CviKI_1 RGCY 9 cut(s) 74, 83, 122, 213, 246, 275, 284, 298, 323
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
Eco130I CCWWGG 1 cut(s) 78
Eco57I CTGAAG 1 cut(s) 247
EcoRII CCWGG 1 cut(s) 213
EcoT14I CCWWGG 1 cut(s) 78
EcoT22I ATGCAT 2 cut(s) 176, 334
ErhI CCWWGG 1 cut(s) 78
FaiI YATR 7 cut(s) 38, 131, 154, 156, 176, 239, 334
FauNDI CATATG 1 cut(s) 154
Fnu4HI GCNGC 3 cut(s) 53, 75, 273
Fsp4HI GCNGC 3 cut(s) 53, 75, 273
FspBI CTAG 2 cut(s) 71, 281
GluI GCNGC 3 cut(s) 53, 75, 273
HinfI GANTC 1 cut(s) 149
Hpy166II GTNNAC 1 cut(s) 25
Hpy188I TCNGA 1 cut(s) 312
Hpy188III TCNNGA 1 cut(s) 86
Hpy8I GTNNAC 1 cut(s) 25
HpyAV CCTTC 1 cut(s) 130
HpyCH4V TGCA 5 cut(s) 52, 174, 237, 251, 332
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 243, 281, 290, 329
LguI GCTCTTC 1 cut(s) 266
LmnI GCTCC 1 cut(s) 158
LpnPI CCDG 4 cut(s) 147, 200, 227, 250
Lsp1109I GCAGC 2 cut(s) 61, 64
MaeI CTAG 2 cut(s) 71, 281
MaeIII GTNAC 2 cut(s) 100, 202
MboII GAAGA 1 cut(s) 253
MluCI AATT 1 cut(s) 125
MmeI TCCRAC 2 cut(s) 91, 335
MnlI CCTC 2 cut(s) 101, 313
Mph1103I ATGCAT 2 cut(s) 176, 334
MroXI GAANNNNTTC 1 cut(s) 140
MspR9I CCNGG 1 cut(s) 215
Mva1269I GAATGC 1 cut(s) 251
MvaI CCWGG 1 cut(s) 215
MwoI GCNNNNNNNGC 5 cut(s) 80, 243, 281, 290, 329
NdeI CATATG 1 cut(s) 154
NmuCI GTSAC 2 cut(s) 100, 202
NsiI ATGCAT 2 cut(s) 176, 334
PciSI GCTCTTC 1 cut(s) 266
PctI GAATGC 1 cut(s) 251
PdmI GAANNNNTTC 1 cut(s) 140
PfeI GAWTC 1 cut(s) 149
PkrI GCNGC 3 cut(s) 54, 76, 274
Psp6I CCWGG 1 cut(s) 213
PspGI CCWGG 1 cut(s) 213
SapI GCTCTTC 1 cut(s) 266
SatI GCNGC 3 cut(s) 53, 75, 273
ScrFI CCNGG 1 cut(s) 215
SetI ASST 6 cut(s) 76, 93, 112, 124, 244, 300
Sse9I AATT 1 cut(s) 125
SsiI CCGC 1 cut(s) 272
SspMI CTAG 2 cut(s) 71, 281
StyD4I CCNGG 1 cut(s) 213
StyI CCWWGG 1 cut(s) 78
TaqI TCGA 1 cut(s) 144
TasI AATT 1 cut(s) 125
TauI GCSGC 1 cut(s) 275
TfiI GAWTC 1 cut(s) 149
TscAI CASTG 1 cut(s) 109
TseFI GTSAC 2 cut(s) 100, 202
TseI GCWGC 2 cut(s) 52, 74
Tsp45I GTSAC 2 cut(s) 100, 202
TspDTI ATGAA 2 cut(s) 118, 162
TspRI CASTG 1 cut(s) 109
XmnI GAANNNNTTC 1 cut(s) 140
XspI CTAG 2 cut(s) 71, 281
Zsp2I ATGCAT 2 cut(s) 176, 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.