Rh5BG047600

Dynein light chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0005787
Physical Location & Seq
Forward (+)
3811755 .. 3812179
425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG047600.1

Sequence Viewer

Length: 336 bp
ATGTTAGAAGGCAAAGCGGTAGTTAACGAGACTGATATGCTTGAAACAATGCAGCAAGAAGCACTCCAATTAGCCGCCAAGGCTCTCGATATCTTTGATGTCACTCAACCTACTGAAATAGCTCAATTCATAAAGAAGGAATTCGATGAATCGTATGGAGCTGGGTGGCAATGCATAGTGGGAACAGATTTTGGTTCGTTTGTGACACACAGCCAGGGGTGTTTTATCCATTTCTGCATAGGTAGCCTTGCATTCTTGCTCTTCAGGGGTGCAGCTAATCTAGCCACCTCGGCGGAGCTAAACAGGATTCCTACATTGGAGGCCTCAAATGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04962 map04962
Pfam Domains
Protein Families
Dynein_light

Protein Analysis

111

Amino Acids

12.09

Weight (kDa)

4.45

Isoelectric Point (pI)

16.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynein_light PF01221 5 - 89 1.4e-34 Dynein light chain type 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 17, 75, 293
AcsI RAATTY 1 cut(s) 140
AcuI CTGAAG 1 cut(s) 247
AgsI TTSAA 1 cut(s) 44
AjnI CCWGG 1 cut(s) 213
AluBI AGCT 4 cut(s) 122, 161, 275, 298
AluI AGCT 4 cut(s) 122, 161, 275, 298
Alw26I GTCTC 1 cut(s) 23
AoxI GGCC 1 cut(s) 321
ApeKI GCWGC 2 cut(s) 52, 272
ApoI RAATTY 1 cut(s) 140
Asp700I GAANNNNTTC 1 cut(s) 140
BbvI GCAGC 2 cut(s) 64, 284
BciT130I CCWGG 1 cut(s) 215
BcoDI GTCTC 1 cut(s) 23
BfaI CTAG 1 cut(s) 281
BglI GCCNNNNNGGC 2 cut(s) 80, 290
BisI GCNGC 3 cut(s) 53, 75, 273
BlsI GCNGC 3 cut(s) 54, 76, 274
Bme1390I CCNGG 1 cut(s) 215
BmrFI CCNGG 1 cut(s) 215
BsaJI CCNNGG 3 cut(s) 78, 214, 288
Bse3DI GCAATG 1 cut(s) 176
BseBI CCWGG 1 cut(s) 215
BseDI CCNNGG 3 cut(s) 78, 214, 288
BseMI GCAATG 1 cut(s) 176
BseXI GCAGC 2 cut(s) 64, 284
BseYI CCCAGC 1 cut(s) 161
BsgI GTGCAG 1 cut(s) 291
BshFI GGCC 1 cut(s) 323
BsmAI GTCTC 1 cut(s) 23
BsmI GAATGC 1 cut(s) 251
BsnI GGCC 1 cut(s) 323
BspACI CCGC 3 cut(s) 17, 75, 293
BspANI GGCC 1 cut(s) 323
BspQI GCTCTTC 1 cut(s) 266
BsrDI GCAATG 1 cut(s) 176
BssECI CCNNGG 3 cut(s) 78, 214, 288
BssT1I CCWWGG 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 215
Bst6I CTCTTC 1 cut(s) 266
BstMAI GTCTC 1 cut(s) 23
BstMWI GCNNNNNNNGC 5 cut(s) 80, 243, 281, 290, 329
BstNI CCWGG 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 213
BstV1I GCAGC 2 cut(s) 64, 284
BsuRI GGCC 1 cut(s) 323
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
EciI GGCGGA 1 cut(s) 308
Eco130I CCWWGG 1 cut(s) 78
Eco147I AGGCCT 1 cut(s) 323
Eco32I GATATC 1 cut(s) 91
Eco57I CTGAAG 1 cut(s) 247
EcoRI GAATTC 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 213
EcoRV GATATC 1 cut(s) 91
EcoT14I CCWWGG 1 cut(s) 78
EcoT22I ATGCAT 2 cut(s) 176, 334
ErhI CCWWGG 1 cut(s) 78
FaiI YATR 6 cut(s) 38, 131, 156, 176, 239, 334
Fnu4HI GCNGC 3 cut(s) 53, 75, 273
Fsp4HI GCNGC 3 cut(s) 53, 75, 273
FspBI CTAG 1 cut(s) 281
GluI GCNGC 3 cut(s) 53, 75, 273
GsaI CCCAGC 1 cut(s) 165
HaeIII GGCC 1 cut(s) 323
HincII GTYRAC 1 cut(s) 25
HindII GTYRAC 1 cut(s) 25
HinfI GANTC 2 cut(s) 149, 307
HpaI GTTAAC 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 25
Hpy188III TCNNGA 1 cut(s) 86
Hpy8I GTNNAC 1 cut(s) 25
HpyAV CCTTC 1 cut(s) 130
HpyCH4V TGCA 6 cut(s) 52, 174, 237, 251, 272, 332
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 243, 281, 290, 329
KspAI GTTAAC 1 cut(s) 25
LguI GCTCTTC 1 cut(s) 266
LmnI GCTCC 2 cut(s) 158, 295
LpnPI CCDG 5 cut(s) 147, 200, 227, 250, 289
Lsp1109I GCAGC 2 cut(s) 64, 284
MaeI CTAG 1 cut(s) 281
MaeIII GTNAC 2 cut(s) 100, 202
MboII GAAGA 1 cut(s) 253
MluCI AATT 3 cut(s) 68, 125, 140
MnlI CCTC 3 cut(s) 298, 313, 334
Mph1103I ATGCAT 2 cut(s) 176, 334
MroXI GAANNNNTTC 1 cut(s) 140
MseI TTAA 1 cut(s) 24
MspR9I CCNGG 1 cut(s) 215
Mva1269I GAATGC 1 cut(s) 251
MvaI CCWGG 1 cut(s) 215
MwoI GCNNNNNNNGC 5 cut(s) 80, 243, 281, 290, 329
NmeAIII GCCGAG 1 cut(s) 269
NmuCI GTSAC 2 cut(s) 100, 202
NsiI ATGCAT 2 cut(s) 176, 334
PceI AGGCCT 1 cut(s) 323
PciSI GCTCTTC 1 cut(s) 266
PctI GAATGC 1 cut(s) 251
PdmI GAANNNNTTC 1 cut(s) 140
PfeI GAWTC 2 cut(s) 149, 307
PkrI GCNGC 3 cut(s) 54, 76, 274
Psp6I CCWGG 1 cut(s) 213
PspFI CCCAGC 1 cut(s) 161
PspGI CCWGG 1 cut(s) 213
SapI GCTCTTC 1 cut(s) 266
SaqAI TTAA 1 cut(s) 24
SatI GCNGC 3 cut(s) 53, 75, 273
ScrFI CCNGG 1 cut(s) 215
SetI ASST 7 cut(s) 112, 124, 163, 244, 277, 290, 300
Sse9I AATT 3 cut(s) 68, 125, 140
SseBI AGGCCT 1 cut(s) 323
SsiI CCGC 3 cut(s) 17, 75, 293
SspMI CTAG 1 cut(s) 281
StuI AGGCCT 1 cut(s) 323
StyD4I CCNGG 1 cut(s) 213
StyI CCWWGG 1 cut(s) 78
TaqI TCGA 2 cut(s) 87, 144
TasI AATT 3 cut(s) 68, 125, 140
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 2 cut(s) 149, 307
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TseFI GTSAC 2 cut(s) 100, 202
TseI GCWGC 2 cut(s) 52, 272
Tsp45I GTSAC 2 cut(s) 100, 202
TspDTI ATGAA 2 cut(s) 118, 162
XapI RAATTY 1 cut(s) 140
XmnI GAANNNNTTC 1 cut(s) 140
XspI CTAG 1 cut(s) 281
Zsp2I ATGCAT 2 cut(s) 176, 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.