Rroxscaffold_1G00044640

Dynein light chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0005787
Physical Location & Seq
Forward (+)
63654946 .. 63655539
594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00044640.1

Sequence Viewer

Length: 351 bp
ATGTTAGAAGGCAAGGCCGTGATTGTTGAGACCGATATGCTTCAAAACATGCAGCAGAATGCAGTTGACTTGGCATCAAAAGCCCTAGATTTCTTCTATGTAACCGAAGCCACCGAGATAGGCCGCTTCATTAAGAAGGATTTTGATAGTACGTATGGACCTGGATGGCAATGTATTGTAGGAACAGATTTTGGTTCGTTTGTTACGCATTGTCACTGTTGTTTCATCTACTTTTGCATTGGCAGCCTAGCAGTTTTACTCTTCAAGGGATCTGCAGGTCCGGATCAAACTCGGGCAAACCACTTGTTCTCCCCTAGAGGCAGTAAAAGCATGATGTTGGAAGTTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04962 map04962
Pfam Domains
Protein Families
Dynein_light

Protein Analysis

116

Amino Acids

12.84

Weight (kDa)

5.46

Isoelectric Point (pI)

18.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynein_light PF01221 5 - 89 1.3e-31 Dynein light chain type 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 266
AccIII TCCGGA 1 cut(s) 280
AciI CCGC 1 cut(s) 124
AclWI GGATC 2 cut(s) 277, 291
AfaI GTAC 1 cut(s) 151
AgsI TTSAA 2 cut(s) 44, 265
AjnI CCWGG 1 cut(s) 160
Alw26I GTCTC 1 cut(s) 23
AlwI GGATC 2 cut(s) 277, 291
Ama87I CYCGRG 1 cut(s) 291
Aor13HI TCCGGA 1 cut(s) 280
AoxI GGCC 2 cut(s) 15, 121
ApeKI GCWGC 2 cut(s) 52, 243
AspS9I GGNCC 2 cut(s) 158, 278
AvaI CYCGRG 1 cut(s) 291
AvaII GGWCC 2 cut(s) 158, 278
BbvI GCAGC 2 cut(s) 64, 255
BccI CCATC 1 cut(s) 159
BceAI ACGGC 1 cut(s) 2
BciT130I CCWGG 1 cut(s) 162
BcoDI GTCTC 1 cut(s) 23
BfaI CTAG 3 cut(s) 86, 248, 315
BfmI CTRYAG 1 cut(s) 273
BfuAI ACCTGC 1 cut(s) 266
BisI GCNGC 3 cut(s) 53, 124, 244
BlsI GCNGC 3 cut(s) 54, 125, 245
Bme1390I CCNGG 1 cut(s) 162
Bme18I GGWCC 2 cut(s) 158, 278
BmeT110I CYCGRG 1 cut(s) 291
BmgT120I GGNCC 2 cut(s) 158, 278
BmrFI CCNGG 1 cut(s) 162
BmsI GCATC 1 cut(s) 83
BsaAI YACGTR 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 23
BsaWI WCCGGW 1 cut(s) 280
BsaXI ACNNNNNCTCC 2 cut(s) 293, 323
Bse3DI GCAATG 1 cut(s) 176
BseAI TCCGGA 1 cut(s) 280
BseBI CCWGG 1 cut(s) 162
BseGI GGATG 1 cut(s) 170
BseMI GCAATG 1 cut(s) 176
BseXI GCAGC 2 cut(s) 64, 255
BshFI GGCC 2 cut(s) 17, 123
BsiHKCI CYCGRG 1 cut(s) 291
BsiSI CCGG 1 cut(s) 281
BsmAI GTCTC 1 cut(s) 23
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 2 cut(s) 17, 123
Bso31I GGTCTC 1 cut(s) 23
BsoBI CYCGRG 1 cut(s) 291
Bsp13I TCCGGA 1 cut(s) 280
Bsp143I GATC 2 cut(s) 269, 283
BspACI CCGC 1 cut(s) 124
BspANI GGCC 2 cut(s) 17, 123
BspEI TCCGGA 1 cut(s) 280
BspMAI CTGCAG 1 cut(s) 277
BspMI ACCTGC 1 cut(s) 266
BspPI GGATC 2 cut(s) 277, 291
BspTNI GGTCTC 1 cut(s) 23
BsrDI GCAATG 1 cut(s) 176
BssMI GATC 2 cut(s) 269, 283
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 1 cut(s) 218
Bst6I CTCTTC 1 cut(s) 266
BstBAI YACGTR 1 cut(s) 153
BstF5I GGATG 1 cut(s) 170
BstKTI GATC 2 cut(s) 272, 286
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 2 cut(s) 269, 283
BstMWI GCNNNNNNNGC 3 cut(s) 80, 243, 327
BstNI CCWGG 1 cut(s) 162
BstNSI RCATGY 1 cut(s) 52
BstSCI CCNGG 1 cut(s) 160
BstSFI CTRYAG 1 cut(s) 273
BstSNI TACGTA 1 cut(s) 153
BstV1I GCAGC 2 cut(s) 64, 255
BstX2I RGATCY 1 cut(s) 269
BstYI RGATCY 1 cut(s) 269
BsuRI GGCC 2 cut(s) 17, 123
BtsCI GGATG 1 cut(s) 170
BtsIMutI CAGTG 1 cut(s) 214
BveI ACCTGC 1 cut(s) 266
Cfr13I GGNCC 2 cut(s) 158, 278
Csp6I GTAC 1 cut(s) 150
CviAII CATG 2 cut(s) 49, 331
CviJI RGCY 5 cut(s) 17, 83, 110, 123, 246
CviKI_1 RGCY 5 cut(s) 17, 83, 110, 123, 246
CviQI GTAC 1 cut(s) 150
DpnI GATC 2 cut(s) 271, 285
DpnII GATC 2 cut(s) 269, 283
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
Eco105I TACGTA 1 cut(s) 153
Eco31I GGTCTC 1 cut(s) 23
Eco47I GGWCC 2 cut(s) 158, 278
Eco88I CYCGRG 1 cut(s) 291
EcoRII CCWGG 1 cut(s) 160
FaeI CATG 2 cut(s) 52, 334
FaiI YATR 5 cut(s) 38, 50, 99, 156, 332
FatI CATG 2 cut(s) 48, 330
Fnu4HI GCNGC 3 cut(s) 53, 124, 244
FokI GGATG 1 cut(s) 177
Fsp4HI GCNGC 3 cut(s) 53, 124, 244
FspBI CTAG 3 cut(s) 86, 248, 315
GluI GCNGC 3 cut(s) 53, 124, 244
HaeIII GGCC 2 cut(s) 17, 123
HapII CCGG 1 cut(s) 281
Hin1II CATG 2 cut(s) 52, 334
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HpaII CCGG 1 cut(s) 281
Hpy166II GTNNAC 1 cut(s) 67
Hpy188III TCNNGA 1 cut(s) 281
Hpy8I GTNNAC 1 cut(s) 67
HpyAV CCTTC 1 cut(s) 130
HpyCH4III ACNGT 1 cut(s) 218
HpyCH4IV ACGT 1 cut(s) 152
HpyCH4V TGCA 4 cut(s) 52, 62, 237, 275
HpyF10VI GCNNNNNNNGC 3 cut(s) 80, 243, 327
HpySE526I ACGT 1 cut(s) 152
Hsp92II CATG 2 cut(s) 52, 334
Kpn2I TCCGGA 1 cut(s) 280
Kzo9I GATC 2 cut(s) 269, 283
LpnPI CCDG 4 cut(s) 147, 174, 261, 294
Lsp1109I GCAGC 2 cut(s) 64, 255
LweI GCATC 1 cut(s) 83
MaeI CTAG 3 cut(s) 86, 248, 315
MaeII ACGT 1 cut(s) 152
MaeIII GTNAC 3 cut(s) 100, 202, 212
MalI GATC 2 cut(s) 271, 285
MboI GATC 2 cut(s) 269, 283
MboII GAAGA 2 cut(s) 85, 253
MflI RGATCY 1 cut(s) 269
MmeI TCCRAC 1 cut(s) 318
MnlI CCTC 1 cut(s) 311
MroI TCCGGA 1 cut(s) 280
MseI TTAA 2 cut(s) 132, 349
MspI CCGG 1 cut(s) 281
MspR9I CCNGG 1 cut(s) 162
Mva1269I GAATGC 1 cut(s) 64
MvaI CCWGG 1 cut(s) 162
MwoI GCNNNNNNNGC 3 cut(s) 80, 243, 327
NdeII GATC 2 cut(s) 269, 283
NlaIII CATG 2 cut(s) 52, 334
NmuCI GTSAC 1 cut(s) 212
NspI RCATGY 1 cut(s) 52
PctI GAATGC 1 cut(s) 64
PkrI GCNGC 3 cut(s) 54, 125, 245
Ppu21I YACGTR 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PspPI GGNCC 2 cut(s) 158, 278
PstI CTGCAG 1 cut(s) 277
PsuI RGATCY 1 cut(s) 269
RsaI GTAC 1 cut(s) 151
RsaNI GTAC 1 cut(s) 150
SaqAI TTAA 2 cut(s) 132, 349
SatI GCNGC 3 cut(s) 53, 124, 244
Sau3AI GATC 2 cut(s) 269, 283
Sau96I GGNCC 2 cut(s) 158, 278
ScrFI CCNGG 1 cut(s) 162
SetI ASST 3 cut(s) 155, 163, 280
SfaNI GCATC 1 cut(s) 83
SfcI CTRYAG 1 cut(s) 273
SinI GGWCC 2 cut(s) 158, 278
SnaBI TACGTA 1 cut(s) 153
SsiI CCGC 1 cut(s) 124
SspMI CTAG 3 cut(s) 86, 248, 315
StyD4I CCNGG 1 cut(s) 160
TaaI ACNGT 1 cut(s) 218
TaiI ACGT 1 cut(s) 155
TaqII GACCGA 1 cut(s) 47
TauI GCSGC 1 cut(s) 126
Tru1I TTAA 2 cut(s) 132, 349
Tru9I TTAA 2 cut(s) 132, 349
TscAI CASTG 1 cut(s) 221
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 2 cut(s) 52, 243
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 2 cut(s) 118, 214
TspRI CASTG 1 cut(s) 221
VpaK11BI GGWCC 2 cut(s) 158, 278
XceI RCATGY 1 cut(s) 52
XspI CTAG 3 cut(s) 86, 248, 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.