Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005787

Physical Location & Seq

Genomic Coordinates Reverse (-)

11505162 .. 11506010

Gene Structure 849 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G191300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGCTAGAAGGCAAGGCAGTCATTGTTGAGACAGACATGCTTCAAACCATGCAGCAGGATGCACTTGTCTTAGGATCGAAAGCCCTCGATGTCTTTGATGTCACTGAGGCCACTGAGATAGGCCGCTTCATTAAAACGGAATTTGACAAGACATATGGACCGGGATGGCAGTGCATTGTAGGAACAGATTTCAGTTCGTTTGTTACACATTGTCATGGCTGTTTCATCTATTTTTGCCTAGGCAACCTTGCAATTTTGCTCTTCAGGGGAGTTGCAGGTCCAGAAGCTGAGGCAAAGCAGCCCTGTGCAGCCTTGGAGGCTGTAAAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

111

Amino Acids

11.94

Weight (kDa)

4.69

Isoelectric Point (pI)

27.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27360
fragaria_vesca	FvH4_3g03950 FvH4_3g21070
malus_domestica	MD05G1325900.v1.1 MD10G1303800.v1.1
prunus_persica	Prupe.4G037500_v2.0.a1 Prupe.4G191300_v2.0.a1
pyrus_communis	pycom05g30010 pycom11g20720
rosa_chinensis	RchiOBHm_Chr5g0006281 RchiOBHm_Chr5g0036101
rosa_laevigata	RLG00000031368 RLG00000033665
rosa_multiflora	Rmu_sc0009466.1_g000003
rosa_roxburghii	Rroxscaffold_1G00044640 Rroxscaffold_1G00069710
rosa_rugosa	Rorug04G0420700 Rorug05G0152700
rosa_samantha	Rh5AG048700 Rh5AG246900 Rh5BG047600 Rh5BG247300 Rh5CG056000 Rh5CG278300 Rh5DG046800 Rh5DG255800
rosa_wichuraiana	Rw5G004840 Rw5G022660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	266
AciI	CCGC	1 cut(s)	124
AclWI	GGATC	1 cut(s)	82
AcsI	RAATTY	1 cut(s)	140
AcuI	CTGAAG	1 cut(s)	247
AgsI	TTSAA	1 cut(s)	44
AluBI	AGCT	1 cut(s)	287
AluI	AGCT	1 cut(s)	287
Alw26I	GTCTC	1 cut(s)	23
AlwI	GGATC	1 cut(s)	82
AlwNI	CAGNNNCTG	1 cut(s)	287
AoxI	GGCC	2 cut(s)	108, 121
ApeKI	GCWGC	3 cut(s)	52, 298, 308
ApoI	RAATTY	1 cut(s)	140
AspA2I	CCTAGG	1 cut(s)	238
AspS9I	GGNCC	2 cut(s)	158, 278
AsuC2I	CCSGG	1 cut(s)	162
AvaII	GGWCC	2 cut(s)	158, 278
AvrII	CCTAGG	1 cut(s)	238
BbvCI	CCTCAGC	1 cut(s)	288
BbvI	GCAGC	3 cut(s)	64, 310, 320
BccI	CCATC	1 cut(s)	159
BcnI	CCSGG	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	23
BfaI	CTAG	2 cut(s)	5, 239
BfuAI	ACCTGC	1 cut(s)	266
BglI	GCCNNNNNGGC	1 cut(s)	317
BisI	GCNGC	4 cut(s)	53, 124, 299, 309
BlnI	CCTAGG	1 cut(s)	238
BlsI	GCNGC	4 cut(s)	54, 125, 300, 310
Bme1390I	CCNGG	1 cut(s)	162
Bme18I	GGWCC	2 cut(s)	158, 278
BmgT120I	GGNCC	2 cut(s)	158, 278
BmrFI	CCNGG	1 cut(s)	162
BmsI	GCATC	1 cut(s)	49
Bpu10I	CCTNAGC	1 cut(s)	288
BpuMI	CCSGG	1 cut(s)	162
BsaJI	CCNNGG	2 cut(s)	238, 312
BseDI	CCNNGG	2 cut(s)	238, 312
BseGI	GGATG	2 cut(s)	64, 170
BseMII	CTCAG	3 cut(s)	96, 105, 279
BseXI	GCAGC	3 cut(s)	64, 310, 320
BsgI	GTGCAG	1 cut(s)	327
BshFI	GGCC	2 cut(s)	110, 123
BsiSI	CCGG	1 cut(s)	161
BsmAI	GTCTC	1 cut(s)	23
BsnI	GGCC	2 cut(s)	110, 123
Bsp143I	GATC	1 cut(s)	74
BspACI	CCGC	1 cut(s)	124
BspANI	GGCC	2 cut(s)	110, 123
BspCNI	CTCAG	3 cut(s)	97, 106, 280
BspMI	ACCTGC	1 cut(s)	266
BspPI	GGATC	1 cut(s)	82
BspQI	GCTCTTC	1 cut(s)	266
BssECI	CCNNGG	2 cut(s)	238, 312
BssMI	GATC	1 cut(s)	74
BssT1I	CCWWGG	2 cut(s)	238, 312
Bst6I	CTCTTC	1 cut(s)	266
BstDEI	CTNAG	4 cut(s)	70, 105, 114, 288
BstF5I	GGATG	2 cut(s)	64, 170
BstKTI	GATC	1 cut(s)	77
BstMAI	GTCTC	1 cut(s)	23
BstMBI	GATC	1 cut(s)	74
BstMWI	GCNNNNNNNGC	2 cut(s)	317, 326
BstNSI	RCATGY	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	160
BstV1I	GCAGC	3 cut(s)	64, 310, 320
BsuRI	GGCC	2 cut(s)	110, 123
BtsCI	GGATG	2 cut(s)	64, 170
BtsI	GCAGTG	1 cut(s)	176
BtsIMutI	CAGTG	3 cut(s)	102, 111, 176
BveI	ACCTGC	1 cut(s)	266
CaiI	CAGNNNCTG	1 cut(s)	287
Cfr13I	GGNCC	2 cut(s)	158, 278
CviAII	CATG	4 cut(s)	37, 49, 215, 330
CviJI	RGCY	8 cut(s)	83, 110, 123, 219, 287, 301, 311, 320
CviKI_1	RGCY	8 cut(s)	83, 110, 123, 219, 287, 301, 311, 320
DdeI	CTNAG	4 cut(s)	70, 105, 114, 288
DpnI	GATC	1 cut(s)	76
DpnII	GATC	1 cut(s)	74
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
Eco130I	CCWWGG	2 cut(s)	238, 312
Eco47I	GGWCC	2 cut(s)	158, 278
Eco57I	CTGAAG	1 cut(s)	247
EcoT14I	CCWWGG	2 cut(s)	238, 312
ErhI	CCWWGG	2 cut(s)	238, 312
FaeI	CATG	4 cut(s)	40, 52, 218, 333
FaiI	YATR	6 cut(s)	38, 50, 154, 156, 216, 331
FatI	CATG	4 cut(s)	36, 48, 214, 329
FauNDI	CATATG	1 cut(s)	154
Fnu4HI	GCNGC	4 cut(s)	53, 124, 299, 309
FokI	GGATG	2 cut(s)	71, 177
Fsp4HI	GCNGC	4 cut(s)	53, 124, 299, 309
FspBI	CTAG	2 cut(s)	5, 239
GluI	GCNGC	4 cut(s)	53, 124, 299, 309
HaeIII	GGCC	2 cut(s)	110, 123
HapII	CCGG	1 cut(s)	161
Hin1II	CATG	4 cut(s)	40, 52, 218, 333
HpaII	CCGG	1 cut(s)	161
Hpy188III	TCNNGA	1 cut(s)	281
HpyCH4V	TGCA	6 cut(s)	52, 62, 174, 251, 275, 308
HpyF10VI	GCNNNNNNNGC	2 cut(s)	317, 326
HpyF3I	CTNAG	4 cut(s)	70, 105, 114, 288
Hsp92II	CATG	4 cut(s)	40, 52, 218, 333
Kzo9I	GATC	1 cut(s)	74
LguI	GCTCTTC	1 cut(s)	266
LpnPI	CCDG	6 cut(s)	41, 174, 250, 261, 294, 316
Lsp1109I	GCAGC	3 cut(s)	64, 310, 320
LweI	GCATC	1 cut(s)	49
MaeI	CTAG	2 cut(s)	5, 239
MaeIII	GTNAC	2 cut(s)	100, 202
MalI	GATC	1 cut(s)	76
MboI	GATC	1 cut(s)	74
MboII	GAAGA	1 cut(s)	253
MluCI	AATT	2 cut(s)	140, 252
MnlI	CCTC	4 cut(s)	95, 100, 283, 310
MseI	TTAA	1 cut(s)	132
MslI	CAYNNNNRTG	1 cut(s)	213
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	162
MwoI	GCNNNNNNNGC	2 cut(s)	317, 326
NciI	CCSGG	1 cut(s)	162
NdeI	CATATG	1 cut(s)	154
NdeII	GATC	1 cut(s)	74
NlaIII	CATG	4 cut(s)	40, 52, 218, 333
NmuCI	GTSAC	1 cut(s)	100
NspI	RCATGY	1 cut(s)	40
PciSI	GCTCTTC	1 cut(s)	266
PkrI	GCNGC	4 cut(s)	54, 125, 300, 310
PspPI	GGNCC	2 cut(s)	158, 278
PstNI	CAGNNNCTG	1 cut(s)	287
RseI	CAYNNNNRTG	1 cut(s)	213
SapI	GCTCTTC	1 cut(s)	266
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	4 cut(s)	53, 124, 299, 309
Sau3AI	GATC	1 cut(s)	74
Sau96I	GGNCC	2 cut(s)	158, 278
ScrFI	CCNGG	1 cut(s)	162
SetI	ASST	3 cut(s)	249, 280, 289
SfaNI	GCATC	1 cut(s)	49
SinI	GGWCC	2 cut(s)	158, 278
SmiMI	CAYNNNNRTG	1 cut(s)	213
Sse9I	AATT	2 cut(s)	140, 252
SsiI	CCGC	1 cut(s)	124
SspMI	CTAG	2 cut(s)	5, 239
StyD4I	CCNGG	1 cut(s)	160
StyI	CCWWGG	2 cut(s)	238, 312
TaqI	TCGA	2 cut(s)	77, 87
TasI	AATT	2 cut(s)	140, 252
TauI	GCSGC	1 cut(s)	126
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TscAI	CASTG	3 cut(s)	109, 118, 176
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	3 cut(s)	52, 298, 308
Tsp45I	GTSAC	1 cut(s)	100
TspDTI	ATGAA	2 cut(s)	118, 214
TspGWI	ACGGA	1 cut(s)	152
TspRI	CASTG	3 cut(s)	109, 118, 176
VpaK11BI	GGWCC	2 cut(s)	158, 278
XapI	RAATTY	1 cut(s)	140
XceI	RCATGY	1 cut(s)	40
XmaJI	CCTAGG	1 cut(s)	238
XspI	CTAG	2 cut(s)	5, 239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.