MD10G1303800.v1.1

Dynein light chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0005787
Physical Location & Seq
Reverse (-)
39011941 .. 39013302
1362 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1303800.v1.1.491

Sequence Viewer

Length: 330 bp
ATGTTGGAAGGCAAAGCCGTCGTCAATGAGACTGATATGCTTCAAGCAATGCAGCAAGACGCTCTCCATTTAGCTGCAAAGGCTCTCGATAACTTCGATGTCACCGAACCCACTGAAATTGCTCAATTCATAAAGAAGGAATTCGACGAGACATACGGGCTGGGGTGGCAATGCATCGTAGGAACAGATTTTGGTTCGTTTGTGACACACAGCCAAGGCTGCTTCATCTATTTCTTCATCGGTAGCCTTGCATTCTTGCTTTTCAGGGGAACGGCTAATCTCGCTGTGGAAGCAGATAAGATCCCGCCACTGGAGGTTGTGAAGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04962 map04962
Pfam Domains
Protein Families
Dynein_light

Protein Analysis

110

Amino Acids

12.04

Weight (kDa)

4.46

Isoelectric Point (pI)

15.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynein_light PF01221 5 - 89 5e-35 Dynein light chain type 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 305
AclWI GGATC 1 cut(s) 295
AcsI RAATTY 1 cut(s) 140
AfiI CCNNNNNNNGG 1 cut(s) 310
AgsI TTSAA 1 cut(s) 44
AluBI AGCT 1 cut(s) 74
AluI AGCT 1 cut(s) 74
Alw26I GTCTC 2 cut(s) 23, 143
AlwI GGATC 1 cut(s) 295
ApeKI GCWGC 3 cut(s) 52, 74, 219
ApoI RAATTY 1 cut(s) 140
ArsI GACNNNNNNTTYG 1 cut(s) 38
Asp700I GAANNNNTTC 1 cut(s) 140
AsuHPI GGTGA 1 cut(s) 94
BbvI GCAGC 3 cut(s) 61, 64, 206
BceAI ACGGC 2 cut(s) 2, 288
BcgI CGANNNNNNTGC 1 cut(s) 35
BcoDI GTCTC 2 cut(s) 23, 143
BisI GCNGC 3 cut(s) 53, 75, 220
BlsI GCNGC 3 cut(s) 54, 76, 221
BmsI GCATC 1 cut(s) 183
BsaJI CCNNGG 1 cut(s) 214
Bsc4I CCNNNNNNNGG 1 cut(s) 310
Bse1I ACTGG 1 cut(s) 315
Bse3DI GCAATG 2 cut(s) 54, 176
BseDI CCNNGG 1 cut(s) 214
BseLI CCNNNNNNNGG 1 cut(s) 310
BseMI GCAATG 2 cut(s) 54, 176
BseNI ACTGG 1 cut(s) 315
BseXI GCAGC 3 cut(s) 61, 64, 206
BseYI CCCAGC 1 cut(s) 160
BslI CCNNNNNNNGG 1 cut(s) 310
BsmAI GTCTC 2 cut(s) 23, 143
BsmI GAATGC 1 cut(s) 251
Bsp143I GATC 1 cut(s) 300
BspACI CCGC 1 cut(s) 305
BspPI GGATC 1 cut(s) 295
BsrDI GCAATG 2 cut(s) 54, 176
BsrI ACTGG 1 cut(s) 315
BssECI CCNNGG 1 cut(s) 214
BssMI GATC 1 cut(s) 300
BssT1I CCWWGG 1 cut(s) 214
BstKTI GATC 1 cut(s) 303
BstMAI GTCTC 2 cut(s) 23, 143
BstMBI GATC 1 cut(s) 300
BstMWI GCNNNNNNNGC 5 cut(s) 80, 166, 219, 281, 290
BstV1I GCAGC 3 cut(s) 61, 64, 206
BstX2I RGATCY 1 cut(s) 300
BstYI RGATCY 1 cut(s) 300
BtsIMutI CAGTG 2 cut(s) 111, 308
CseI GACGC 1 cut(s) 68
CspCI CAANNNNNGTGG 2 cut(s) 100, 135
CviJI RGCY 8 cut(s) 17, 74, 83, 160, 213, 219, 246, 275
CviKI_1 RGCY 8 cut(s) 17, 74, 83, 160, 213, 219, 246, 275
DpnI GATC 1 cut(s) 302
DpnII GATC 1 cut(s) 300
Eco130I CCWWGG 1 cut(s) 214
EcoRI GAATTC 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 214
EcoT22I ATGCAT 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 214
FaiI YATR 4 cut(s) 38, 131, 154, 328
FauI CCCGC 1 cut(s) 312
Fnu4HI GCNGC 3 cut(s) 53, 75, 220
Fsp4HI GCNGC 3 cut(s) 53, 75, 220
GluI GCNGC 3 cut(s) 53, 75, 220
GsaI CCCAGC 1 cut(s) 164
HgaI GACGC 1 cut(s) 68
HphI GGTGA 1 cut(s) 94
Hpy188III TCNNGA 1 cut(s) 86
Hpy99I CGWCG 2 cut(s) 23, 149
HpyAV CCTTC 2 cut(s) 130, 316
HpyCH4V TGCA 4 cut(s) 52, 77, 174, 251
HpyF10VI GCNNNNNNNGC 5 cut(s) 80, 166, 219, 281, 290
Kzo9I GATC 1 cut(s) 300
LpnPI CCDG 3 cut(s) 146, 250, 296
Lsp1109I GCAGC 3 cut(s) 61, 64, 206
LweI GCATC 1 cut(s) 183
MaeIII GTNAC 2 cut(s) 100, 202
MalI GATC 1 cut(s) 302
MboI GATC 1 cut(s) 300
MboII GAAGA 1 cut(s) 226
MflI RGATCY 1 cut(s) 300
MluCI AATT 3 cut(s) 117, 125, 140
MnlI CCTC 1 cut(s) 307
Mph1103I ATGCAT 1 cut(s) 176
MroXI GAANNNNTTC 1 cut(s) 140
Mva1269I GAATGC 1 cut(s) 251
MwoI GCNNNNNNNGC 5 cut(s) 80, 166, 219, 281, 290
NdeII GATC 1 cut(s) 300
NmuCI GTSAC 2 cut(s) 100, 202
NsiI ATGCAT 1 cut(s) 176
PcsI WCGNNNNNNNCGW 2 cut(s) 93, 102
PctI GAATGC 1 cut(s) 251
PdmI GAANNNNTTC 1 cut(s) 140
PkrI GCNGC 3 cut(s) 54, 76, 221
PspFI CCCAGC 1 cut(s) 160
PsuI RGATCY 1 cut(s) 300
SatI GCNGC 3 cut(s) 53, 75, 220
Sau3AI GATC 1 cut(s) 300
SetI ASST 2 cut(s) 76, 318
SfaNI GCATC 1 cut(s) 183
Sse9I AATT 3 cut(s) 117, 125, 140
SsiI CCGC 1 cut(s) 305
StyI CCWWGG 1 cut(s) 214
TaqI TCGA 3 cut(s) 87, 96, 144
TasI AATT 3 cut(s) 117, 125, 140
TscAI CASTG 2 cut(s) 118, 315
TseFI GTSAC 2 cut(s) 100, 202
TseI GCWGC 3 cut(s) 52, 74, 219
Tsp45I GTSAC 2 cut(s) 100, 202
TspDTI ATGAA 3 cut(s) 118, 214, 226
TspRI CASTG 2 cut(s) 118, 315
XapI RAATTY 1 cut(s) 140
XmnI GAANNNNTTC 1 cut(s) 140
Zsp2I ATGCAT 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.