Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009466.1

Orthogroup ID

OG0005787

Physical Location & Seq

Genomic Coordinates Forward (+)

7615 .. 9545

Gene Structure 1931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009466.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

atgggtaggccgcctggtagcaggaataagagccaacactctgggaagaaggtgggaacggcccctctgagactcacctaccctgcagtcggtgcttcagcagcaagcgattcccagtcccggcaggtttcctcttcagctatgttagaaggcaaagcggtagttaacgagactgatatgcttgaaacaatgcagcaagaagcactccaattagccgccaaggctctcgatatgtttgatgtcactcaacctactgaaatagctcaattcataaagaaggaattcgatgaatcgtatggagctgggtggcaatgcatagtgggaacagattttggttcgtttgtgacccacagccaggggtgttttatccatttctgcataggtagccttgcattcttgctctttaggggtgcagctaatctagccacctcggcggagctaaataggattccgacattggaggcctcaaatgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04962 map04962

Pfam Domains

Protein Families

Dynein_light

Protein Analysis

158

Amino Acids

16.86

Weight (kDa)

5.88

Isoelectric Point (pI)

32.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005787)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27360
fragaria_vesca	FvH4_3g03950 FvH4_3g21070
malus_domestica	MD05G1325900.v1.1 MD10G1303800.v1.1
prunus_persica	Prupe.4G037500_v2.0.a1 Prupe.4G191300_v2.0.a1
pyrus_communis	pycom05g30010 pycom11g20720
rosa_chinensis	RchiOBHm_Chr5g0006281 RchiOBHm_Chr5g0036101
rosa_laevigata	RLG00000031368 RLG00000033665
rosa_multiflora	Rmu_sc0009466.1_g000003
rosa_roxburghii	Rroxscaffold_1G00044640 Rroxscaffold_1G00069710
rosa_rugosa	Rorug04G0420700 Rorug05G0152700
rosa_samantha	Rh5AG048700 Rh5AG246900 Rh5BG047600 Rh5BG247300 Rh5CG056000 Rh5CG278300 Rh5DG046800 Rh5DG255800
rosa_wichuraiana	Rw5G004840 Rw5G022660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	115
AciI	CCGC	4 cut(s)	11, 158, 216, 434
AcsI	RAATTY	1 cut(s)	281
AcuI	CTGAAG	2 cut(s)	81, 120
AfiI	CCNNNNNNNGG	3 cut(s)	89, 120, 355
AgsI	TTSAA	1 cut(s)	185
AjnI	CCWGG	2 cut(s)	13, 354
AluBI	AGCT	5 cut(s)	140, 263, 302, 416, 439
AluI	AGCT	5 cut(s)	140, 263, 302, 416, 439
Alw26I	GTCTC	2 cut(s)	64, 164
AoxI	GGCC	3 cut(s)	8, 60, 462
ApeKI	GCWGC	3 cut(s)	101, 193, 413
ApoI	RAATTY	1 cut(s)	281
Asp700I	GAANNNNTTC	1 cut(s)	281
AspS9I	GGNCC	1 cut(s)	61
AsuC2I	CCSGG	1 cut(s)	121
AsuHPI	GGTGA	1 cut(s)	67
BbvI	GCAGC	3 cut(s)	113, 205, 425
BceAI	ACGGC	1 cut(s)	75
BciT130I	CCWGG	2 cut(s)	15, 356
BcnI	CCSGG	1 cut(s)	121
BcoDI	GTCTC	2 cut(s)	64, 164
BfaI	CTAG	1 cut(s)	422
BfmI	CTRYAG	1 cut(s)	84
BfuAI	ACCTGC	1 cut(s)	115
BglI	GCCNNNNNGGC	2 cut(s)	221, 431
BisI	GCNGC	5 cut(s)	11, 102, 194, 216, 414
BlsI	GCNGC	5 cut(s)	12, 103, 195, 217, 415
Bme1390I	CCNGG	3 cut(s)	15, 121, 356
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	1 cut(s)	63
BmrFI	CCNGG	3 cut(s)	15, 121, 356
BmrI	ACTGGG	1 cut(s)	109
BmuI	ACTGGG	1 cut(s)	109
BpuMI	CCSGG	1 cut(s)	121
BsaJI	CCNNGG	3 cut(s)	219, 355, 429
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 120, 355
Bse1I	ACTGG	1 cut(s)	115
Bse3DI	GCAATG	1 cut(s)	317
BseBI	CCWGG	2 cut(s)	15, 356
BseDI	CCNNGG	3 cut(s)	219, 355, 429
BseLI	CCNNNNNNNGG	3 cut(s)	89, 120, 355
BseMI	GCAATG	1 cut(s)	317
BseMII	CTCAG	1 cut(s)	59
BseNI	ACTGG	1 cut(s)	115
BseXI	GCAGC	3 cut(s)	113, 205, 425
BseYI	CCCAGC	1 cut(s)	302
BsgI	GTGCAG	1 cut(s)	432
BshFI	GGCC	3 cut(s)	10, 62, 464
BsiSI	CCGG	1 cut(s)	121
BslFI	GGGAC	1 cut(s)	103
BslI	CCNNNNNNNGG	3 cut(s)	89, 120, 355
BsmAI	GTCTC	2 cut(s)	64, 164
BsmFI	GGGAC	1 cut(s)	103
BsmI	GAATGC	1 cut(s)	392
BsnI	GGCC	3 cut(s)	10, 62, 464
BspACI	CCGC	4 cut(s)	11, 158, 216, 434
BspANI	GGCC	3 cut(s)	10, 62, 464
BspCNI	CTCAG	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	63
BspMAI	CTGCAG	1 cut(s)	88
BspMI	ACCTGC	1 cut(s)	115
BsrDI	GCAATG	1 cut(s)	317
BsrI	ACTGG	1 cut(s)	115
BssECI	CCNNGG	3 cut(s)	219, 355, 429
BssT1I	CCWWGG	1 cut(s)	219
Bst2UI	CCWGG	2 cut(s)	15, 356
Bst6I	CTCTTC	1 cut(s)	139
BstAPI	GCANNNNNTGC	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	1 cut(s)	68
BstMAI	GTCTC	2 cut(s)	64, 164
BstMWI	GCNNNNNNNGC	7 cut(s)	92, 101, 221, 384, 422, 431, 470
BstNI	CCWGG	2 cut(s)	15, 356
BstSCI	CCNGG	3 cut(s)	13, 119, 354
BstSFI	CTRYAG	1 cut(s)	84
BstV1I	GCAGC	3 cut(s)	113, 205, 425
BstXI	CCANNNNNNTGG	1 cut(s)	41
BsuRI	GGCC	3 cut(s)	10, 62, 464
BveI	ACCTGC	1 cut(s)	115
Cac8I	GCNNGC	1 cut(s)	106
Cfr13I	GGNCC	1 cut(s)	61
DdeI	CTNAG	1 cut(s)	68
Eam1104I	CTCTTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	139
EciI	GGCGGA	1 cut(s)	449
Eco130I	CCWWGG	1 cut(s)	219
Eco147I	AGGCCT	1 cut(s)	464
Eco57I	CTGAAG	2 cut(s)	81, 120
EcoRI	GAATTC	1 cut(s)	281
EcoRII	CCWGG	2 cut(s)	13, 354
EcoT14I	CCWWGG	1 cut(s)	219
EcoT22I	ATGCAT	2 cut(s)	317, 475
ErhI	CCWWGG	1 cut(s)	219
FaiI	YATR	8 cut(s)	143, 179, 233, 272, 297, 317, 380, 475
FaqI	GGGAC	1 cut(s)	103
Fnu4HI	GCNGC	5 cut(s)	11, 102, 194, 216, 414
Fsp4HI	GCNGC	5 cut(s)	11, 102, 194, 216, 414
FspBI	CTAG	1 cut(s)	422
GluI	GCNGC	5 cut(s)	11, 102, 194, 216, 414
GsaI	CCCAGC	1 cut(s)	306
HaeIII	GGCC	3 cut(s)	10, 62, 464
HapII	CCGG	1 cut(s)	121
HincII	GTYRAC	1 cut(s)	166
HindII	GTYRAC	1 cut(s)	166
HinfI	GANTC	4 cut(s)	72, 110, 290, 448
HpaI	GTTAAC	1 cut(s)	166
HpaII	CCGG	1 cut(s)	121
HphI	GGTGA	1 cut(s)	67
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188I	TCNGA	2 cut(s)	69, 453
Hpy188III	TCNNGA	1 cut(s)	227
Hpy8I	GTNNAC	1 cut(s)	166
HpyAV	CCTTC	3 cut(s)	43, 143, 271
HpyCH4V	TGCA	7 cut(s)	86, 193, 315, 378, 392, 413, 473
HpyF10VI	GCNNNNNNNGC	7 cut(s)	92, 101, 221, 384, 422, 431, 470
HpyF3I	CTNAG	1 cut(s)	68
KspAI	GTTAAC	1 cut(s)	166
LmnI	GCTCC	2 cut(s)	299, 436
Lsp1109I	GCAGC	3 cut(s)	113, 205, 425
MaeI	CTAG	1 cut(s)	422
MaeIII	GTNAC	2 cut(s)	241, 343
MboII	GAAGA	2 cut(s)	58, 126
MluCI	AATT	3 cut(s)	209, 266, 281
MlyI	GAGTC	1 cut(s)	66
MmeI	TCCRAC	1 cut(s)	476
MnlI	CCTC	5 cut(s)	75, 142, 439, 454, 475
Mph1103I	ATGCAT	2 cut(s)	317, 475
MroXI	GAANNNNTTC	1 cut(s)	281
MseI	TTAA	1 cut(s)	165
MspI	CCGG	1 cut(s)	121
MspR9I	CCNGG	3 cut(s)	15, 121, 356
Mva1269I	GAATGC	1 cut(s)	392
MvaI	CCWGG	2 cut(s)	15, 356
MwoI	GCNNNNNNNGC	7 cut(s)	92, 101, 221, 384, 422, 431, 470
NciI	CCSGG	1 cut(s)	121
NlaIV	GGNNCC	1 cut(s)	63
NmeAIII	GCCGAG	1 cut(s)	410
NmuCI	GTSAC	2 cut(s)	241, 343
NsiI	ATGCAT	2 cut(s)	317, 475
PceI	AGGCCT	1 cut(s)	464
PctI	GAATGC	1 cut(s)	392
PdmI	GAANNNNTTC	1 cut(s)	281
PfeI	GAWTC	3 cut(s)	110, 290, 448
PkrI	GCNGC	5 cut(s)	12, 103, 195, 217, 415
PleI	GAGTC	1 cut(s)	66
PpsI	GAGTC	1 cut(s)	66
Psp6I	CCWGG	2 cut(s)	13, 354
PspFI	CCCAGC	1 cut(s)	302
PspGI	CCWGG	2 cut(s)	13, 354
PspN4I	GGNNCC	1 cut(s)	63
PspPI	GGNCC	1 cut(s)	61
PstI	CTGCAG	1 cut(s)	88
SaqAI	TTAA	1 cut(s)	165
SatI	GCNGC	5 cut(s)	11, 102, 194, 216, 414
Sau96I	GGNCC	1 cut(s)	61
SchI	GAGTC	1 cut(s)	66
ScrFI	CCNGG	3 cut(s)	15, 121, 356
SfcI	CTRYAG	1 cut(s)	84
Sse9I	AATT	3 cut(s)	209, 266, 281
SseBI	AGGCCT	1 cut(s)	464
SsiI	CCGC	4 cut(s)	11, 158, 216, 434
SspMI	CTAG	1 cut(s)	422
StuI	AGGCCT	1 cut(s)	464
StyD4I	CCNGG	3 cut(s)	13, 119, 354
StyI	CCWWGG	1 cut(s)	219
TaqI	TCGA	2 cut(s)	228, 285
TasI	AATT	3 cut(s)	209, 266, 281
TauI	GCSGC	2 cut(s)	13, 218
TfiI	GAWTC	3 cut(s)	110, 290, 448
Tru1I	TTAA	1 cut(s)	165
Tru9I	TTAA	1 cut(s)	165
TseFI	GTSAC	2 cut(s)	241, 343
TseI	GCWGC	3 cut(s)	101, 193, 413
Tsp45I	GTSAC	2 cut(s)	241, 343
TspDTI	ATGAA	2 cut(s)	259, 303
XapI	RAATTY	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	281
XspI	CTAG	1 cut(s)	422
Zsp2I	ATGCAT	2 cut(s)	317, 475

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.