FvH4_3g21070

Dynein light chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0005787
Physical Location & Seq
Reverse (-)
14084297 .. 14086124
1828 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g21070.t1

Sequence Viewer

Length: 333 bp
ATGTTAGAAGGCAAGGCAGTGATTGTGGAGACTGATATGCTTCAAAACATGCAGCAGAATGCAGTTGACTTGGCATCAAAAGCCCTAGATTTCTTCGACGTTACTGAAGCTACTGAGATTGGCCGCTTCATTAAGAAGGATTTTGACAGTACGTATGGACCTGGATGGCAGTGTATTGTAGGAACAGATTTCGGTTCATTTGTTACGCATTGCCACGGTTGTTTCATCTATTTTTGCATTGGAAGCCTCGCAGTTTTACTCTTCAAGGGATCTGCAGGTCCGGATCAAACACAGGCAAACCACTGTTCTTCCCTAGAGGGAGTAAAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04962 map04962
Pfam Domains
Protein Families
Dynein_light

Protein Analysis

111

Amino Acids

11.93

Weight (kDa)

4.73

Isoelectric Point (pI)

13.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dynein_light PF01221 5 - 89 6.2e-33 Dynein light chain type 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 266
AccIII TCCGGA 1 cut(s) 280
AciI CCGC 1 cut(s) 124
AclWI GGATC 2 cut(s) 277, 291
AcoI YGGCCR 1 cut(s) 121
AcuI CTGAAG 1 cut(s) 126
AfaI GTAC 1 cut(s) 151
AgsI TTSAA 2 cut(s) 44, 265
AjnI CCWGG 1 cut(s) 160
AluBI AGCT 1 cut(s) 110
AluI AGCT 1 cut(s) 110
Alw26I GTCTC 1 cut(s) 23
AlwI GGATC 2 cut(s) 277, 291
Aor13HI TCCGGA 1 cut(s) 280
AoxI GGCC 1 cut(s) 121
ApeKI GCWGC 1 cut(s) 52
AspS9I GGNCC 2 cut(s) 158, 278
AvaII GGWCC 2 cut(s) 158, 278
BbvI GCAGC 1 cut(s) 64
BccI CCATC 1 cut(s) 159
BciT130I CCWGG 1 cut(s) 162
BcoDI GTCTC 1 cut(s) 23
BfaI CTAG 2 cut(s) 86, 314
BfmI CTRYAG 1 cut(s) 273
BfuAI ACCTGC 1 cut(s) 266
BisI GCNGC 2 cut(s) 53, 124
BlsI GCNGC 2 cut(s) 54, 125
Bme1390I CCNGG 1 cut(s) 162
Bme18I GGWCC 2 cut(s) 158, 278
BmgT120I GGNCC 2 cut(s) 158, 278
BmrFI CCNGG 1 cut(s) 162
BmsI GCATC 1 cut(s) 83
BsaAI YACGTR 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 214
BsaWI WCCGGW 1 cut(s) 280
Bse3DI GCAATG 1 cut(s) 208
BseAI TCCGGA 1 cut(s) 280
BseBI CCWGG 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 214
BseGI GGATG 1 cut(s) 170
BseMI GCAATG 1 cut(s) 208
BseMII CTCAG 1 cut(s) 105
BseXI GCAGC 1 cut(s) 64
BshFI GGCC 1 cut(s) 123
BsiSI CCGG 1 cut(s) 281
BsmAI GTCTC 1 cut(s) 23
BsmI GAATGC 1 cut(s) 64
BsnI GGCC 1 cut(s) 123
Bsp13I TCCGGA 1 cut(s) 280
Bsp143I GATC 2 cut(s) 269, 283
BspACI CCGC 1 cut(s) 124
BspANI GGCC 1 cut(s) 123
BspCNI CTCAG 1 cut(s) 106
BspEI TCCGGA 1 cut(s) 280
BspMAI CTGCAG 1 cut(s) 277
BspMI ACCTGC 1 cut(s) 266
BspPI GGATC 2 cut(s) 277, 291
BsrDI GCAATG 1 cut(s) 208
BssECI CCNNGG 1 cut(s) 214
BssMI GATC 2 cut(s) 269, 283
Bst2UI CCWGG 1 cut(s) 162
Bst4CI ACNGT 3 cut(s) 149, 218, 305
Bst6I CTCTTC 1 cut(s) 266
BstBAI YACGTR 1 cut(s) 153
BstDEI CTNAG 1 cut(s) 114
BstDSI CCRYGG 1 cut(s) 214
BstF5I GGATG 1 cut(s) 170
BstKTI GATC 2 cut(s) 272, 286
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 2 cut(s) 269, 283
BstMWI GCNNNNNNNGC 2 cut(s) 80, 243
BstNI CCWGG 1 cut(s) 162
BstNSI RCATGY 1 cut(s) 52
BstSCI CCNGG 1 cut(s) 160
BstSFI CTRYAG 1 cut(s) 273
BstSNI TACGTA 1 cut(s) 153
BstV1I GCAGC 1 cut(s) 64
BstX2I RGATCY 1 cut(s) 269
BstYI RGATCY 1 cut(s) 269
BsuRI GGCC 1 cut(s) 123
BtgI CCRYGG 1 cut(s) 214
BtsCI GGATG 1 cut(s) 170
BtsI GCAGTG 2 cut(s) 24, 176
BtsIMutI CAGTG 3 cut(s) 24, 176, 301
BveI ACCTGC 1 cut(s) 266
Cfr13I GGNCC 2 cut(s) 158, 278
Csp6I GTAC 1 cut(s) 150
CviAII CATG 2 cut(s) 49, 330
CviJI RGCY 4 cut(s) 83, 110, 123, 246
CviKI_1 RGCY 4 cut(s) 83, 110, 123, 246
CviQI GTAC 1 cut(s) 150
DdeI CTNAG 1 cut(s) 114
DpnI GATC 2 cut(s) 271, 285
DpnII GATC 2 cut(s) 269, 283
EaeI YGGCCR 1 cut(s) 121
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
Eco105I TACGTA 1 cut(s) 153
Eco47I GGWCC 2 cut(s) 158, 278
Eco57I CTGAAG 1 cut(s) 126
EcoRII CCWGG 1 cut(s) 160
FaeI CATG 2 cut(s) 52, 333
FaiI YATR 4 cut(s) 38, 50, 156, 331
FatI CATG 2 cut(s) 48, 329
Fnu4HI GCNGC 2 cut(s) 53, 124
FokI GGATG 1 cut(s) 177
Fsp4HI GCNGC 2 cut(s) 53, 124
FspBI CTAG 2 cut(s) 86, 314
GluI GCNGC 2 cut(s) 53, 124
HaeIII GGCC 1 cut(s) 123
HapII CCGG 1 cut(s) 281
Hin1II CATG 2 cut(s) 52, 333
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HpaII CCGG 1 cut(s) 281
Hpy166II GTNNAC 1 cut(s) 67
Hpy188III TCNNGA 1 cut(s) 281
Hpy8I GTNNAC 1 cut(s) 67
Hpy99I CGWCG 1 cut(s) 101
HpyAV CCTTC 1 cut(s) 130
HpyCH4III ACNGT 3 cut(s) 149, 218, 305
HpyCH4IV ACGT 2 cut(s) 99, 152
HpyCH4V TGCA 4 cut(s) 52, 62, 237, 275
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 243
HpyF3I CTNAG 1 cut(s) 114
HpySE526I ACGT 2 cut(s) 99, 152
Hsp92II CATG 2 cut(s) 52, 333
Kpn2I TCCGGA 1 cut(s) 280
Kzo9I GATC 2 cut(s) 269, 283
LpnPI CCDG 5 cut(s) 147, 174, 261, 278, 294
Lsp1109I GCAGC 1 cut(s) 64
LweI GCATC 1 cut(s) 83
MaeI CTAG 2 cut(s) 86, 314
MaeII ACGT 2 cut(s) 99, 152
MaeIII GTNAC 2 cut(s) 100, 202
MalI GATC 2 cut(s) 271, 285
MboI GATC 2 cut(s) 269, 283
MboII GAAGA 3 cut(s) 85, 253, 300
MflI RGATCY 1 cut(s) 269
MnlI CCTC 2 cut(s) 257, 310
MroI TCCGGA 1 cut(s) 280
MseI TTAA 1 cut(s) 132
MspI CCGG 1 cut(s) 281
MspR9I CCNGG 1 cut(s) 162
Mva1269I GAATGC 1 cut(s) 64
MvaI CCWGG 1 cut(s) 162
MwoI GCNNNNNNNGC 2 cut(s) 80, 243
NdeII GATC 2 cut(s) 269, 283
NlaIII CATG 2 cut(s) 52, 333
NspI RCATGY 1 cut(s) 52
PctI GAATGC 1 cut(s) 64
PkrI GCNGC 2 cut(s) 54, 125
Ppu21I YACGTR 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
PspPI GGNCC 2 cut(s) 158, 278
PstI CTGCAG 1 cut(s) 277
PsuI RGATCY 1 cut(s) 269
RsaI GTAC 1 cut(s) 151
RsaNI GTAC 1 cut(s) 150
SaqAI TTAA 1 cut(s) 132
SatI GCNGC 2 cut(s) 53, 124
Sau3AI GATC 2 cut(s) 269, 283
Sau96I GGNCC 2 cut(s) 158, 278
ScrFI CCNGG 1 cut(s) 162
SetI ASST 5 cut(s) 102, 112, 155, 163, 280
SfaNI GCATC 1 cut(s) 83
SfcI CTRYAG 1 cut(s) 273
SinI GGWCC 2 cut(s) 158, 278
SnaBI TACGTA 1 cut(s) 153
SsiI CCGC 1 cut(s) 124
SspMI CTAG 2 cut(s) 86, 314
StyD4I CCNGG 1 cut(s) 160
TaaI ACNGT 3 cut(s) 149, 218, 305
TaiI ACGT 2 cut(s) 102, 155
TaqI TCGA 1 cut(s) 96
TauI GCSGC 1 cut(s) 126
Tru1I TTAA 1 cut(s) 132
Tru9I TTAA 1 cut(s) 132
TscAI CASTG 3 cut(s) 24, 176, 308
TseI GCWGC 1 cut(s) 52
TspDTI ATGAA 3 cut(s) 118, 186, 214
TspRI CASTG 3 cut(s) 24, 176, 308
VpaK11BI GGWCC 2 cut(s) 158, 278
XceI RCATGY 1 cut(s) 52
XspI CTAG 2 cut(s) 86, 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.