Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012779

Physical Location & Seq

Genomic Coordinates Reverse (-)

13909542 .. 13910995

Gene Structure 1454 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G27950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGATGATGGATGAGTTTATGGATCTTAGACCAGTGAAGTACACAGAGCACAAGACTGTTATCAGAAAGTACACTAAAAAGTCGTCTATGGAGAGGAAGACCAGTGTTCGTGACTCGGCCAGGTTGGTTCGGGTCTCAATGACGGATCGTGACGCCACTGATTCATCAAGCGACGAGGAAGAGTTTCTGTTCCCTCGAAGACGTGTCAAGAGATTGATTAACGAGATCAGAGTCGAGCCTAGCAGCTCTTCCACCGGCGACGTCTCTGCTTCTCCGACGAAGGACCGGAAAAGAATCAACGTTGATTCTACGGTTCAAAAGCCCTCTGTTTCCGGCCAAAACCAGAAGAAGTACCGCGGCGTGAGACAGCGACCATGGGGAAAATGGGCGGCGGAGATTCGTGATCCTGAGCAACGCCGGAGAATCTGGCTCGGTACTTTTGCAACGGCGGAGGAAGCTGCCATCGTCTACGACAACGCAGCAATCAAACTTCGTGGCCCTGATGCTCTTACCAACTTCACCGTACAACCAGAACCAGAACCGGTACAAGAACAAGAACAAGAACCGGAGAGCAACATGTCGGTTTCGATATCAGAATCAATGGACGATTCTCAACATCTATCATCTCCGACATCGGTTCTCAACTACCAAACATATGTCTCGGAGGAACCAATCGATAGTCTTATCAAACCGGTTAAACAAGAGTTTCTTGAACCAGAACAAGAGCCAATAAGCTGGCATCTTGGAGAAGGTAATACTAATACTAATGATGATTCATTTCCATTGGACATTACATTTCTCGACAACTATTTCAATGAATCATTACCAGACATCTCCATCTTCGATCAACCTATGTCTCCTATTCAACCAACAGAGAATGATTTCTTCAACGACCTTATGTTATTCGATAGCAACGCAGAAGAATACTACTCCTCCGAGATCAAAGAGATTGGTTCATCGTTCAACGATCTTGATGATTCTTTGATATCCGATCTCTTACTTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

335

Amino Acids

38.45

Weight (kDa)

4.62

Isoelectric Point (pI)

62.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	117 - 166	1.5e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27950 AT5G53290
fragaria_vesca	FvH4_7g30930
malus_domestica	MD01G1214500.v1.1 MD07G1284200.v1.1
prunus_persica	Prupe.2G306400_v2.0.a1
pyrus_communis	pycom01g22510 pycom07g25810
rosa_chinensis	RchiOBHm_Chr1g0380021
rosa_laevigata	RLG00000026340
rosa_multiflora	Rmu_sc0004184.1_g000009
rosa_roxburghii	Rroxscaffold_4G00279790
rosa_rugosa	Rorug01G0416600
rosa_samantha	Rh1AG441100 Rh1BG396800 Rh1CG410000 Rh1DG427600
rosa_wichuraiana	Rw1G038360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	264
AccI	GTMKAC	1 cut(s)	468
AccII	CGCG	1 cut(s)	357
AciI	CCGC	5 cut(s)	355, 357, 389, 392, 449
AclI	AACGTT	1 cut(s)	300
AclWI	GGATC	3 cut(s)	30, 153, 398
AcoI	YGGCCR	2 cut(s)	117, 334
AcyI	GRCGYC	2 cut(s)	153, 261
AfaI	GTAC	6 cut(s)	41, 71, 353, 436, 525, 546
AflIII	ACRYGT	2 cut(s)	202, 576
AgeI	ACCGGT	2 cut(s)	541, 691
AgsI	TTSAA	6 cut(s)	317, 713, 814, 866, 889, 964
AjiI	CACGTC	1 cut(s)	203
AjnI	CCWGG	1 cut(s)	119
AluBI	AGCT	3 cut(s)	246, 458, 735
AluI	AGCT	3 cut(s)	246, 458, 735
Alw21I	GWGCWC	1 cut(s)	51
Alw26I	GTCTC	5 cut(s)	139, 268, 358, 664, 861
AlwI	GGATC	3 cut(s)	30, 153, 398
AoxI	GGCC	3 cut(s)	117, 334, 496
ApeKI	GCWGC	3 cut(s)	243, 458, 479
AsiGI	ACCGGT	2 cut(s)	541, 691
Asp700I	GAANNNNTTC	2 cut(s)	183, 881
AspS9I	GGNCC	2 cut(s)	283, 497
AsuHPI	GGTGA	1 cut(s)	511
AvaII	GGWCC	1 cut(s)	283
BbsI	GAAGAC	2 cut(s)	104, 205
Bbv12I	GWGCWC	1 cut(s)	51
BbvI	GCAGC	3 cut(s)	255, 445, 491
BccI	CCATC	2 cut(s)	470, 845
BceAI	ACGGC	1 cut(s)	462
BcgI	CGANNNNNNTGC	2 cut(s)	248, 282
BciT130I	CCWGG	1 cut(s)	121
BcoDI	GTCTC	5 cut(s)	139, 268, 358, 664, 861
BfaI	CTAG	1 cut(s)	240
BisI	GCNGC	5 cut(s)	244, 358, 390, 459, 480
BlsI	GCNGC	5 cut(s)	245, 359, 391, 460, 481
Bme1390I	CCNGG	1 cut(s)	121
Bme18I	GGWCC	1 cut(s)	283
BmgBI	CACGTC	1 cut(s)	203
BmgT120I	GGNCC	2 cut(s)	283, 497
BmiI	GGNNCC	1 cut(s)	669
BmrFI	CCNGG	1 cut(s)	121
BmsI	GCATC	2 cut(s)	493, 748
BpiI	GAAGAC	2 cut(s)	104, 205
Bpu10I	CCTNAGC	1 cut(s)	408
Bsa29I	ATCGAT	1 cut(s)	675
BsaHI	GRCGYC	2 cut(s)	153, 261
BsaI	GGTCTC	1 cut(s)	139
BsaJI	CCNNGG	2 cut(s)	355, 374
BsaWI	WCCGGW	4 cut(s)	285, 541, 565, 691
BsaXI	ACNNNNNCTCC	2 cut(s)	917, 947
Bse118I	RCCGGY	3 cut(s)	254, 541, 691
Bse1I	ACTGG	2 cut(s)	32, 102
BseBI	CCWGG	1 cut(s)	121
BseCI	ATCGAT	1 cut(s)	675
BseDI	CCNNGG	2 cut(s)	355, 374
BseGI	GGATG	1 cut(s)	16
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	2 cut(s)	32, 102
BseRI	GAGGAG	1 cut(s)	922
BseXI	GCAGC	3 cut(s)	255, 445, 491
Bsh1236I	CGCG	1 cut(s)	357
BshFI	GGCC	3 cut(s)	119, 336, 498
BshTI	ACCGGT	2 cut(s)	541, 691
BshVI	ATCGAT	1 cut(s)	675
BsiHKAI	GWGCWC	1 cut(s)	51
BsiSI	CCGG	7 cut(s)	255, 286, 333, 418, 542, 566, 692
BsmAI	GTCTC	5 cut(s)	139, 268, 358, 664, 861
BsmBI	CGTCTC	1 cut(s)	268
BsnI	GGCC	3 cut(s)	119, 336, 498
Bso31I	GGTCTC	1 cut(s)	139
Bsp1286I	GDGCHC	1 cut(s)	51
Bsp143I	GATC	8 cut(s)	22, 145, 225, 403, 844, 939, 967, 991
Bsp19I	CCATGG	1 cut(s)	374
BspACI	CCGC	5 cut(s)	355, 357, 389, 392, 449
BspANI	GGCC	3 cut(s)	119, 336, 498
BspCNI	CTCAG	1 cut(s)	400
BspDI	ATCGAT	1 cut(s)	675
BspFNI	CGCG	1 cut(s)	357
BspLI	GGNNCC	1 cut(s)	669
BspPI	GGATC	3 cut(s)	30, 153, 398
BspQI	GCTCTTC	1 cut(s)	253
BspTNI	GGTCTC	1 cut(s)	139
BsrFI	RCCGGY	3 cut(s)	254, 541, 691
BsrI	ACTGG	2 cut(s)	32, 102
BssAI	RCCGGY	3 cut(s)	254, 541, 691
BssECI	CCNNGG	2 cut(s)	355, 374
BssMI	GATC	8 cut(s)	22, 145, 225, 403, 844, 939, 967, 991
BssNI	GRCGYC	2 cut(s)	153, 261
BssT1I	CCWWGG	1 cut(s)	374
Bst2UI	CCWGG	1 cut(s)	121
Bst4CI	ACNGT	3 cut(s)	58, 313, 523
Bst6I	CTCTTC	2 cut(s)	174, 253
BstACI	GRCGYC	2 cut(s)	153, 261
BstC8I	GCNNGC	1 cut(s)	737
BstDEI	CTNAG	2 cut(s)	26, 408
BstDSI	CCRYGG	2 cut(s)	355, 374
BstF5I	GGATG	1 cut(s)	16
BstFNI	CGCG	1 cut(s)	357
BstKTI	GATC	8 cut(s)	25, 148, 228, 406, 847, 942, 970, 994
BstMAI	GTCTC	5 cut(s)	139, 268, 358, 664, 861
BstMBI	GATC	8 cut(s)	22, 145, 225, 403, 844, 939, 967, 991
BstMWI	GCNNNNNNNGC	1 cut(s)	455
BstNI	CCWGG	1 cut(s)	121
BstNSI	RCATGY	1 cut(s)	580
BstSCI	CCNGG	1 cut(s)	119
BstUI	CGCG	1 cut(s)	357
BstV1I	GCAGC	3 cut(s)	255, 445, 491
BstV2I	GAAGAC	2 cut(s)	104, 205
BstX2I	RGATCY	1 cut(s)	22
BstXI	CCANNNNNNTGG	1 cut(s)	735
BstYI	RGATCY	1 cut(s)	22
Bsu15I	ATCGAT	1 cut(s)	675
BsuRI	GGCC	3 cut(s)	119, 336, 498
BsuTUI	ATCGAT	1 cut(s)	675
BtgI	CCRYGG	2 cut(s)	355, 374
BtrI	CACGTC	1 cut(s)	203
BtsCI	GGATG	1 cut(s)	16
BtsIMutI	CAGTG	3 cut(s)	39, 109, 156
Cac8I	GCNNGC	1 cut(s)	737
Cfr10I	RCCGGY	3 cut(s)	254, 541, 691
Cfr13I	GGNCC	2 cut(s)	283, 497
Cfr42I	CCGCGG	1 cut(s)	358
ClaI	ATCGAT	1 cut(s)	675
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	6 cut(s)	40, 70, 352, 435, 524, 545
CspAI	ACCGGT	2 cut(s)	541, 691
CspCI	CAANNNNNGTGG	2 cut(s)	475, 510
CviAII	CATG	2 cut(s)	375, 577
CviQI	GTAC	6 cut(s)	40, 70, 352, 435, 524, 545
DdeI	CTNAG	2 cut(s)	26, 408
DpnI	GATC	8 cut(s)	24, 147, 227, 405, 846, 941, 969, 993
DpnII	GATC	8 cut(s)	22, 145, 225, 403, 844, 939, 967, 991
EaeI	YGGCCR	2 cut(s)	117, 334
Eam1104I	CTCTTC	2 cut(s)	174, 253
EarI	CTCTTC	2 cut(s)	174, 253
EciI	GGCGGA	2 cut(s)	407, 464
Eco130I	CCWWGG	1 cut(s)	374
Eco31I	GGTCTC	1 cut(s)	139
Eco32I	GATATC	2 cut(s)	591, 987
Eco47I	GGWCC	1 cut(s)	283
EcoRII	CCWGG	1 cut(s)	119
EcoRV	GATATC	2 cut(s)	591, 987
EcoT14I	CCWWGG	1 cut(s)	374
ErhI	CCWWGG	1 cut(s)	374
Esp3I	CGTCTC	1 cut(s)	268
FaeI	CATG	2 cut(s)	378, 580
FaiI	YATR	8 cut(s)	20, 89, 376, 578, 655, 657, 854, 899
FalI	AAGNNNNNCTT	2 cut(s)	693, 725
FatI	CATG	2 cut(s)	374, 576
FauNDI	CATATG	1 cut(s)	655
FblI	GTMKAC	1 cut(s)	468
Fnu4HI	GCNGC	5 cut(s)	244, 358, 390, 459, 480
FokI	GGATG	1 cut(s)	23
Fsp4HI	GCNGC	5 cut(s)	244, 358, 390, 459, 480
FspBI	CTAG	1 cut(s)	240
GluI	GCNGC	5 cut(s)	244, 358, 390, 459, 480
HaeIII	GGCC	3 cut(s)	119, 336, 498
HapII	CCGG	7 cut(s)	255, 286, 333, 418, 542, 566, 692
HgaI	GACGC	1 cut(s)	161
Hin1I	GRCGYC	2 cut(s)	153, 261
Hin1II	CATG	2 cut(s)	378, 580
HpaII	CCGG	7 cut(s)	255, 286, 333, 418, 542, 566, 692
HphI	GGTGA	1 cut(s)	511
Hpy166II	GTNNAC	3 cut(s)	42, 72, 469
Hpy188I	TCNGA	8 cut(s)	65, 230, 276, 595, 630, 664, 937, 991
Hpy188III	TCNNGA	8 cut(s)	110, 149, 208, 401, 407, 710, 800, 971
Hpy8I	GTNNAC	3 cut(s)	42, 72, 469
Hpy99I	CGWCG	3 cut(s)	176, 263, 280
HpyAV	CCTTC	2 cut(s)	274, 743
HpyCH4III	ACNGT	3 cut(s)	58, 313, 523
HpyCH4IV	ACGT	3 cut(s)	202, 261, 300
HpyCH4V	TGCA	1 cut(s)	443
HpyF10VI	GCNNNNNNNGC	1 cut(s)	455
HpyF3I	CTNAG	2 cut(s)	26, 408
HpySE526I	ACGT	3 cut(s)	202, 261, 300
Hsp92I	GRCGYC	2 cut(s)	153, 261
Hsp92II	CATG	2 cut(s)	378, 580
KspI	CCGCGG	1 cut(s)	358
Kzo9I	GATC	8 cut(s)	22, 145, 225, 403, 844, 939, 967, 991
LguI	GCTCTTC	1 cut(s)	253
Lsp1109I	GCAGC	3 cut(s)	255, 445, 491
LweI	GCATC	2 cut(s)	493, 748
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	3 cut(s)	202, 261, 300
MaeIII	GTNAC	2 cut(s)	110, 149
MalI	GATC	8 cut(s)	24, 147, 227, 405, 846, 941, 969, 993
MboI	GATC	8 cut(s)	22, 145, 225, 403, 844, 939, 967, 991
MboII	GAAGA	8 cut(s)	109, 191, 210, 240, 358, 832, 877, 932
MflI	RGATCY	1 cut(s)	22
MhlI	GDGCHC	1 cut(s)	51
MlyI	GAGTC	2 cut(s)	107, 240
MmeI	TCCRAC	2 cut(s)	299, 653
MnlI	CCTC	7 cut(s)	87, 169, 204, 334, 445, 658, 943
MroXI	GAANNNNTTC	2 cut(s)	183, 881
MseI	TTAA	2 cut(s)	219, 696
MspA1I	CMGCKG	1 cut(s)	357
MspI	CCGG	7 cut(s)	255, 286, 333, 418, 542, 566, 692
MspR9I	CCNGG	1 cut(s)	121
MvaI	CCWGG	1 cut(s)	121
MvnI	CGCG	1 cut(s)	357
MwoI	GCNNNNNNNGC	1 cut(s)	455
NcoI	CCATGG	1 cut(s)	374
NdeI	CATATG	1 cut(s)	655
NdeII	GATC	8 cut(s)	22, 145, 225, 403, 844, 939, 967, 991
NlaIII	CATG	2 cut(s)	378, 580
NlaIV	GGNNCC	1 cut(s)	669
NmeAIII	GCCGAG	1 cut(s)	95
NmuCI	GTSAC	2 cut(s)	110, 149
NspI	RCATGY	1 cut(s)	580
PciI	ACATGT	1 cut(s)	576
PciSI	GCTCTTC	1 cut(s)	253
PdmI	GAANNNNTTC	2 cut(s)	183, 881
PinAI	ACCGGT	2 cut(s)	541, 691
PkrI	GCNGC	5 cut(s)	245, 359, 391, 460, 481
PleI	GAGTC	2 cut(s)	107, 239
PpsI	GAGTC	2 cut(s)	107, 239
PscI	ACATGT	1 cut(s)	576
Psp1406I	AACGTT	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	119
PspGI	CCWGG	1 cut(s)	119
PspN4I	GGNNCC	1 cut(s)	669
PspPI	GGNCC	2 cut(s)	283, 497
PsuI	RGATCY	1 cut(s)	22
RsaI	GTAC	6 cut(s)	41, 71, 353, 436, 525, 546
RsaNI	GTAC	6 cut(s)	40, 70, 352, 435, 524, 545
SacII	CCGCGG	1 cut(s)	358
SapI	GCTCTTC	1 cut(s)	253
SaqAI	TTAA	2 cut(s)	219, 696
SatI	GCNGC	5 cut(s)	244, 358, 390, 459, 480
Sau3AI	GATC	8 cut(s)	22, 145, 225, 403, 844, 939, 967, 991
Sau96I	GGNCC	2 cut(s)	283, 497
SchI	GAGTC	2 cut(s)	107, 240
ScrFI	CCNGG	1 cut(s)	121
SduI	GDGCHC	1 cut(s)	51
SfaNI	GCATC	2 cut(s)	493, 748
Sfr303I	CCGCGG	1 cut(s)	358
SgrAI	CRCCGGYG	1 cut(s)	254
SgrBI	CCGCGG	1 cut(s)	358
SinI	GGWCC	1 cut(s)	283
SsiI	CCGC	5 cut(s)	355, 357, 389, 392, 449
SspMI	CTAG	1 cut(s)	240
StyD4I	CCNGG	1 cut(s)	119
StyI	CCWWGG	1 cut(s)	374
TaaI	ACNGT	3 cut(s)	58, 313, 523
TaiI	ACGT	3 cut(s)	205, 264, 303
TaqI	TCGA	7 cut(s)	196, 234, 587, 675, 801, 843, 906
TatI	WGTACW	2 cut(s)	39, 69
TauI	GCSGC	2 cut(s)	360, 392
Tru1I	TTAA	2 cut(s)	219, 696
Tru9I	TTAA	2 cut(s)	219, 696
TscAI	CASTG	3 cut(s)	39, 109, 163
TseFI	GTSAC	2 cut(s)	110, 149
TseI	GCWGC	3 cut(s)	243, 458, 479
Tsp45I	GTSAC	2 cut(s)	110, 149
TspDTI	ATGAA	4 cut(s)	153, 765, 831, 945
TspGWI	ACGGA	1 cut(s)	158
TspRI	CASTG	3 cut(s)	39, 109, 163
VpaK11BI	GGWCC	1 cut(s)	283
XceI	RCATGY	1 cut(s)	580
XcmI	CCANNNNNNNNNTGG	1 cut(s)	381
XmiI	GTMKAC	1 cut(s)	468
XmnI	GAANNNNTTC	2 cut(s)	183, 881
XspI	CTAG	1 cut(s)	240
ZraI	GACGTC	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.