Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012779

Physical Location & Seq

Genomic Coordinates Reverse (-)

21617714 .. 21619281

Gene Structure 1568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G53290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGACGAATATATTGATTTCCGACCATTGAAGTACACAGAGCACAAGACTTCAATGACTAAATACACCAAAAAGTCATCGGAAAAACTTTCCGGTGGTAAGTCATTGAAAAAGGTTAGTATTTGTTATACTGATCCTGACGCAACAGATTCATCAAGTGACGAAGACGAAGAAGATTTCTTGTTTCCTCGCCGGAGAGTCAAAAGATTCGTTAACGAGATCACTGTTGAGCCTAGCTGTAACAACGTCGTCACCGGAGTTTCGATGAAAGATAGAAAGAGACTCTCTTCTTCCTCCGATGAAACTCAATCTCCGGCGTCGAGTCGTCAACGTCCTAATAACAAAGTTTCAGTCTCCGGTCAGATAAAGAAGTTCCGTGGTGTTAGACAACGGCCATGGGGGAAATGGGCGGCGGAGATTAGAGATCCGGAGCAACGTCGGAGGATTTGGCTCGGGACTTTTGAGACGGCGGAGGAAGCTGCCGTGGTTTATGATAACGCCGCTATAAGACTCCGTGGACCGGACGCTTTAACTAATTTCTCCATACCGCCTCAAGAAGAGGAAGAAGAAGAAGAACCGGAACCGGTTATTGAGGAGAAACCGGTTATTATGACGACGCCAACACCAACAACATCGAGTTCTGAATCAACTGAAGAAGATTTACAACATCTCTCATCTCCTACTTCGGTTCTCAATCACCGGTCAGAAGAGATTCAACAAGTACAACAACCGTTTAAATCAGCTAAACCCGAACCGGGGGTTTCAAATGCACCATGGTGGCATACCGGGTTTAATACCGGTTTAGGTGAATCAGACGATTCATTTCCTTTGGATACTCCGTTTCTTGACAACTATTTCAATGAATCACCACCAGAGATGTCAATATTTGACCAACCAATGGATCAAATTTTCTGTGAAAATGATGATATCTTCAATGATATGTTGTTCTTGGGTGGTGAAACTATGAACATTGAAGATGAGTTAACAAGTTCTAGTATCAAAGATATGGGTTCAACGTTTAGTGATTTTGATGATTCATTGATATCAGATCTATTAGTTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0022622 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048364 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

354

Amino Acids

40.1

Weight (kDa)

4.56

Isoelectric Point (pI)

69.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	124 - 173	2.5e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27950 AT5G53290
fragaria_vesca	FvH4_7g30930
malus_domestica	MD01G1214500.v1.1 MD07G1284200.v1.1
prunus_persica	Prupe.2G306400_v2.0.a1
pyrus_communis	pycom01g22510 pycom07g25810
rosa_chinensis	RchiOBHm_Chr1g0380021
rosa_laevigata	RLG00000026340
rosa_multiflora	Rmu_sc0004184.1_g000009
rosa_roxburghii	Rroxscaffold_4G00279790
rosa_rugosa	Rorug01G0416600
rosa_samantha	Rh1AG441100 Rh1BG396800 Rh1CG410000 Rh1DG427600
rosa_wichuraiana	Rw1G038360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	898
AccIII	TCCGGA	1 cut(s)	427
AciI	CCGC	5 cut(s)	410, 413, 470, 501, 548
AclI	AACGTT	1 cut(s)	1016
AclWI	GGATC	3 cut(s)	128, 419, 909
AcoI	YGGCCR	1 cut(s)	392
AcsI	RAATTY	1 cut(s)	906
AcuI	CTGAAG	1 cut(s)	672
AcyI	GRCGYC	2 cut(s)	317, 617
AfaI	GTAC	2 cut(s)	35, 723
AfiI	CCNNNNNNNGG	4 cut(s)	520, 755, 756, 898
AgeI	ACCGGT	4 cut(s)	583, 601, 699, 797
AgsI	TTSAA	9 cut(s)	31, 54, 109, 716, 765, 859, 934, 974, 1014
AleI	CACNNNNGTG	1 cut(s)	775
AluBI	AGCT	3 cut(s)	237, 479, 743
AluI	AGCT	3 cut(s)	237, 479, 743
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	3 cut(s)	274, 358, 458
AlwI	GGATC	3 cut(s)	128, 419, 909
Ama87I	CYCGRG	1 cut(s)	452
Aor13HI	TCCGGA	1 cut(s)	427
AoxI	GGCC	1 cut(s)	392
ApeKI	GCWGC	1 cut(s)	479
ApoI	RAATTY	1 cut(s)	906
ArsI	GACNNNNNNTTYG	2 cut(s)	336, 368
AsiGI	ACCGGT	4 cut(s)	583, 601, 699, 797
Asp700I	GAANNNNTTC	1 cut(s)	711
AspS9I	GGNCC	1 cut(s)	518
AsuC2I	CCSGG	2 cut(s)	756, 787
AsuHPI	GGTGA	5 cut(s)	244, 689, 818, 858, 968
AvaI	CYCGRG	1 cut(s)	452
AvaII	GGWCC	1 cut(s)	518
BarI	GAAGNNNNNNTAC	2 cut(s)	645, 677
BbsI	GAAGAC	1 cut(s)	171
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	1 cut(s)	466
BceAI	ACGGC	3 cut(s)	407, 467, 483
BciVI	GTATCC	1 cut(s)	826
BcnI	CCSGG	2 cut(s)	756, 787
BcoDI	GTCTC	3 cut(s)	274, 358, 458
BfaI	CTAG	2 cut(s)	234, 993
BfuI	GTATCC	1 cut(s)	826
BglII	AGATCT	1 cut(s)	1048
BisI	GCNGC	3 cut(s)	411, 480, 501
BlsI	GCNGC	3 cut(s)	412, 481, 502
Bme1390I	CCNGG	2 cut(s)	756, 787
Bme18I	GGWCC	1 cut(s)	518
BmeT110I	CYCGRG	1 cut(s)	452
BmgT120I	GGNCC	1 cut(s)	518
BmiI	GGNNCC	1 cut(s)	582
BmrFI	CCNGG	2 cut(s)	756, 787
BpiI	GAAGAC	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	537
BpuMI	CCSGG	2 cut(s)	756, 787
BsaHI	GRCGYC	2 cut(s)	317, 617
BsaJI	CCNNGG	6 cut(s)	376, 395, 483, 514, 755, 773
BsaXI	ACNNNNNCTCC	2 cut(s)	295, 325
Bsc4I	CCNNNNNNNGG	4 cut(s)	520, 755, 756, 898
Bse118I	RCCGGY	4 cut(s)	583, 601, 699, 797
BseAI	TCCGGA	1 cut(s)	427
BseDI	CCNNGG	6 cut(s)	376, 395, 483, 514, 755, 773
BseLI	CCNNNNNNNGG	4 cut(s)	520, 755, 756, 898
BseRI	GAGGAG	1 cut(s)	608
BseXI	GCAGC	1 cut(s)	466
BshFI	GGCC	1 cut(s)	394
BshTI	ACCGGT	4 cut(s)	583, 601, 699, 797
BsiHKAI	GWGCWC	1 cut(s)	45
BsiHKCI	CYCGRG	1 cut(s)	452
BslFI	GGGAC	1 cut(s)	469
BslI	CCNNNNNNNGG	4 cut(s)	520, 755, 756, 898
BsmAI	GTCTC	3 cut(s)	274, 358, 458
BsmBI	CGTCTC	1 cut(s)	458
BsmFI	GGGAC	1 cut(s)	469
BsnI	GGCC	1 cut(s)	394
BsoBI	CYCGRG	1 cut(s)	452
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp13I	TCCGGA	1 cut(s)	427
Bsp143I	GATC	5 cut(s)	133, 219, 424, 901, 1048
Bsp19I	CCATGG	2 cut(s)	395, 773
BspACI	CCGC	5 cut(s)	410, 413, 470, 501, 548
BspANI	GGCC	1 cut(s)	394
BspEI	TCCGGA	1 cut(s)	427
BspLI	GGNNCC	1 cut(s)	582
BspPI	GGATC	3 cut(s)	128, 419, 909
BsrFI	RCCGGY	4 cut(s)	583, 601, 699, 797
BssAI	RCCGGY	4 cut(s)	583, 601, 699, 797
BssECI	CCNNGG	6 cut(s)	376, 395, 483, 514, 755, 773
BssMI	GATC	5 cut(s)	133, 219, 424, 901, 1048
BssNI	GRCGYC	2 cut(s)	317, 617
BssT1I	CCWWGG	2 cut(s)	395, 773
Bst4CI	ACNGT	2 cut(s)	226, 732
Bst6I	CTCTTC	3 cut(s)	292, 552, 702
BstACI	GRCGYC	2 cut(s)	317, 617
BstDSI	CCRYGG	5 cut(s)	376, 395, 483, 514, 773
BstKTI	GATC	5 cut(s)	136, 222, 427, 904, 1051
BstMAI	GTCTC	3 cut(s)	274, 358, 458
BstMBI	GATC	5 cut(s)	133, 219, 424, 901, 1048
BstMWI	GCNNNNNNNGC	1 cut(s)	476
BstSCI	CCNGG	2 cut(s)	754, 785
BstV1I	GCAGC	1 cut(s)	466
BstV2I	GAAGAC	1 cut(s)	171
BstX2I	RGATCY	2 cut(s)	424, 1048
BstYI	RGATCY	2 cut(s)	424, 1048
BsuI	GTATCC	1 cut(s)	826
BsuRI	GGCC	1 cut(s)	394
BtgI	CCRYGG	5 cut(s)	376, 395, 483, 514, 773
BtsIMutI	CAGTG	1 cut(s)	222
Cfr10I	RCCGGY	4 cut(s)	583, 601, 699, 797
Cfr13I	GGNCC	1 cut(s)	518
CseI	GACGC	4 cut(s)	149, 306, 533, 625
Csp6I	GTAC	2 cut(s)	34, 722
CspAI	ACCGGT	4 cut(s)	583, 601, 699, 797
CviAII	CATG	2 cut(s)	396, 774
CviJI	RGCY	6 cut(s)	232, 237, 394, 451, 479, 743
CviKI_1	RGCY	6 cut(s)	232, 237, 394, 451, 479, 743
CviQI	GTAC	2 cut(s)	34, 722
DpnI	GATC	5 cut(s)	135, 221, 426, 903, 1050
DpnII	GATC	5 cut(s)	133, 219, 424, 901, 1048
DraI	TTTAAA	1 cut(s)	736
EaeI	YGGCCR	1 cut(s)	392
Eam1104I	CTCTTC	3 cut(s)	292, 552, 702
EarI	CTCTTC	3 cut(s)	292, 552, 702
EciI	GGCGGA	2 cut(s)	428, 485
Eco130I	CCWWGG	2 cut(s)	395, 773
Eco32I	GATATC	2 cut(s)	928, 1044
Eco47I	GGWCC	1 cut(s)	518
Eco57I	CTGAAG	1 cut(s)	672
Eco88I	CYCGRG	1 cut(s)	452
EcoRV	GATATC	2 cut(s)	928, 1044
EcoT14I	CCWWGG	2 cut(s)	395, 773
ErhI	CCWWGG	2 cut(s)	395, 773
Esp3I	CGTCTC	1 cut(s)	458
FaeI	CATG	2 cut(s)	399, 777
FaqI	GGGAC	1 cut(s)	469
FatI	CATG	2 cut(s)	395, 773
Fnu4HI	GCNGC	3 cut(s)	411, 480, 501
Fsp4HI	GCNGC	3 cut(s)	411, 480, 501
FspBI	CTAG	2 cut(s)	234, 993
GluI	GCNGC	3 cut(s)	411, 480, 501
HaeIII	GGCC	1 cut(s)	394
HgaI	GACGC	4 cut(s)	149, 306, 533, 625
Hin1I	GRCGYC	2 cut(s)	317, 617
Hin1II	CATG	2 cut(s)	399, 777
HincII	GTYRAC	3 cut(s)	214, 329, 984
HindII	GTYRAC	3 cut(s)	214, 329, 984
HpaI	GTTAAC	2 cut(s)	214, 984
HphI	GGTGA	5 cut(s)	244, 689, 818, 858, 968
Hpy166II	GTNNAC	5 cut(s)	36, 214, 329, 518, 984
Hpy188I	TCNGA	9 cut(s)	23, 82, 298, 363, 441, 643, 706, 814, 1048
Hpy188III	TCNNGA	5 cut(s)	137, 428, 454, 554, 845
Hpy8I	GTNNAC	5 cut(s)	36, 214, 329, 518, 984
Hpy99I	CGWCG	4 cut(s)	251, 322, 441, 619
HpyCH4III	ACNGT	2 cut(s)	226, 732
HpyCH4IV	ACGT	4 cut(s)	246, 331, 436, 1016
HpyCH4V	TGCA	1 cut(s)	770
HpyF10VI	GCNNNNNNNGC	1 cut(s)	476
HpySE526I	ACGT	4 cut(s)	246, 331, 436, 1016
Hsp92I	GRCGYC	2 cut(s)	317, 617
Hsp92II	CATG	2 cut(s)	399, 777
Kpn2I	TCCGGA	1 cut(s)	427
KspAI	GTTAAC	2 cut(s)	214, 984
Kzo9I	GATC	5 cut(s)	133, 219, 424, 901, 1048
LmnI	GCTCC	1 cut(s)	430
Lsp1109I	GCAGC	1 cut(s)	466
MaeI	CTAG	2 cut(s)	234, 993
MaeII	ACGT	4 cut(s)	246, 331, 436, 1016
MaeIII	GTNAC	3 cut(s)	158, 239, 250
MalI	GATC	5 cut(s)	135, 221, 426, 903, 1050
MboI	GATC	5 cut(s)	133, 219, 424, 901, 1048
MflI	RGATCY	2 cut(s)	424, 1048
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	2 cut(s)	535, 906
MlyI	GAGTC	4 cut(s)	207, 276, 331, 504
MmeI	TCCRAC	2 cut(s)	46, 419
MnlI	CCTC	7 cut(s)	198, 304, 435, 466, 553, 561, 586
MroI	TCCGGA	1 cut(s)	427
MroXI	GAANNNNTTC	1 cut(s)	711
MseI	TTAA	6 cut(s)	213, 530, 735, 792, 983, 1063
MslI	CAYNNNNRTG	1 cut(s)	775
MspR9I	CCNGG	2 cut(s)	756, 787
MwoI	GCNNNNNNNGC	1 cut(s)	476
NciI	CCSGG	2 cut(s)	756, 787
NcoI	CCATGG	2 cut(s)	395, 773
NdeII	GATC	5 cut(s)	133, 219, 424, 901, 1048
NlaIII	CATG	2 cut(s)	399, 777
NlaIV	GGNNCC	1 cut(s)	582
NmuCI	GTSAC	2 cut(s)	158, 250
OliI	CACNNNNGTG	1 cut(s)	775
PdmI	GAANNNNTTC	1 cut(s)	711
PfeI	GAWTC	8 cut(s)	149, 207, 644, 712, 809, 818, 863, 1034
PflMI	CCANNNNNTGG	1 cut(s)	898
PinAI	ACCGGT	4 cut(s)	583, 601, 699, 797
PkrI	GCNGC	3 cut(s)	412, 481, 502
PleI	GAGTC	4 cut(s)	206, 276, 330, 504
PpsI	GAGTC	4 cut(s)	206, 276, 330, 504
Psp1406I	AACGTT	1 cut(s)	1016
PspN4I	GGNNCC	1 cut(s)	582
PspPI	GGNCC	1 cut(s)	518
PsuI	RGATCY	2 cut(s)	424, 1048
RsaI	GTAC	2 cut(s)	35, 723
RsaNI	GTAC	2 cut(s)	34, 722
RseI	CAYNNNNRTG	1 cut(s)	775
SaqAI	TTAA	6 cut(s)	213, 530, 735, 792, 983, 1063
SatI	GCNGC	3 cut(s)	411, 480, 501
Sau3AI	GATC	5 cut(s)	133, 219, 424, 901, 1048
Sau96I	GGNCC	1 cut(s)	518
SchI	GAGTC	4 cut(s)	207, 276, 331, 504
ScrFI	CCNGG	2 cut(s)	756, 787
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	9 cut(s)	117, 239, 249, 334, 439, 481, 745, 808, 1019
SinI	GGWCC	1 cut(s)	518
SmiMI	CAYNNNNRTG	1 cut(s)	775
SmlI	CTYRAG	1 cut(s)	552
SmoI	CTYRAG	1 cut(s)	552
Sse9I	AATT	2 cut(s)	535, 906
SsiI	CCGC	5 cut(s)	410, 413, 470, 501, 548
SspI	AATATT	1 cut(s)	885
SspMI	CTAG	2 cut(s)	234, 993
StyD4I	CCNGG	2 cut(s)	754, 785
StyI	CCWWGG	2 cut(s)	395, 773
TaaI	ACNGT	2 cut(s)	226, 732
TaiI	ACGT	4 cut(s)	249, 334, 439, 1019
TaqI	TCGA	3 cut(s)	263, 320, 635
TasI	AATT	2 cut(s)	535, 906
TatI	WGTACW	2 cut(s)	33, 721
TauI	GCSGC	2 cut(s)	413, 503
TfiI	GAWTC	8 cut(s)	149, 207, 644, 712, 809, 818, 863, 1034
Tru1I	TTAA	6 cut(s)	213, 530, 735, 792, 983, 1063
Tru9I	TTAA	6 cut(s)	213, 530, 735, 792, 983, 1063
TscAI	CASTG	1 cut(s)	229
TseFI	GTSAC	2 cut(s)	158, 250
TseI	GCWGC	1 cut(s)	479
Tsp45I	GTSAC	2 cut(s)	158, 250
TspDTI	ATGAA	7 cut(s)	141, 281, 315, 810, 876, 980, 1026
TspGWI	ACGGA	3 cut(s)	365, 503, 828
TspRI	CASTG	1 cut(s)	229
Van91I	CCANNNNNTGG	1 cut(s)	898
VpaK11BI	GGWCC	1 cut(s)	518
XapI	RAATTY	1 cut(s)	906
XcmI	CCANNNNNNNNNTGG	1 cut(s)	402
XmnI	GAANNNNTTC	1 cut(s)	711
XspI	CTAG	2 cut(s)	234, 993

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.