Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0012779

Physical Location & Seq

Genomic Coordinates Reverse (-)

51932970 .. 51933269

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0416600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGTATGGTCACTTTACCCCAATCCAGCGCTCCATAATTGTAGACTTCATCCAGTCCCTCAGTTCCCAGCGTCGTGCCCCACTCCTTCCCTCAACTTCTTCCTGGTGGAAAACCACCGAGAAATACAAGATCGGATCTTCCATCGTCCCTTCCACCAGTCCCTACGACATCCTCTGCGGCGTCCCCTACACTGCCCTCTACACCGCCCTCCCCATTCGCTGAGAGCCAAATTTGCTCTAGGACAAACATCAGCTTCGAAATCGAACCCAGAAGACCAGAAAAGCCGTCGTGGACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

99

Amino Acids

11.6

Weight (kDa)

11.35

Isoelectric Point (pI)

72.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27950 AT5G53290
fragaria_vesca	FvH4_7g30930
malus_domestica	MD01G1214500.v1.1 MD07G1284200.v1.1
prunus_persica	Prupe.2G306400_v2.0.a1
pyrus_communis	pycom01g22510 pycom07g25810
rosa_chinensis	RchiOBHm_Chr1g0380021
rosa_laevigata	RLG00000026340
rosa_multiflora	Rmu_sc0004184.1_g000009
rosa_roxburghii	Rroxscaffold_4G00279790
rosa_rugosa	Rorug01G0416600
rosa_samantha	Rh1AG441100 Rh1BG396800 Rh1CG410000 Rh1DG427600
rosa_wichuraiana	Rw1G038360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	43
AciI	CCGC	2 cut(s)	178, 205
AclWI	GGATC	1 cut(s)	143
AcsI	RAATTY	1 cut(s)	230
AcyI	GRCGYC	1 cut(s)	181
AfeI	AGCGCT	1 cut(s)	30
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	1 cut(s)	254
AluI	AGCT	1 cut(s)	254
AlwI	GGATC	1 cut(s)	143
Aor51HI	AGCGCT	1 cut(s)	30
ApoI	RAATTY	1 cut(s)	230
AspLEI	GCGC	1 cut(s)	31
AsuII	TTCGAA	1 cut(s)	257
BaeGI	GKGCMC	1 cut(s)	80
BbsI	GAAGAC	1 cut(s)	279
BccI	CCATC	1 cut(s)	150
BceAI	ACGGC	1 cut(s)	270
BciT130I	CCWGG	1 cut(s)	104
BfaI	CTAG	1 cut(s)	239
BfoI	RGCGCY	1 cut(s)	32
BisI	GCNGC	1 cut(s)	179
BlsI	GCNGC	1 cut(s)	180
Bme1390I	CCNGG	1 cut(s)	104
BmrFI	CCNGG	1 cut(s)	104
BpiI	GAAGAC	1 cut(s)	279
Bpu14I	TTCGAA	1 cut(s)	257
BsaHI	GRCGYC	1 cut(s)	181
Bse1I	ACTGG	2 cut(s)	53, 157
BseBI	CCWGG	1 cut(s)	104
BseGI	GGATG	2 cut(s)	49, 169
BseMII	CTCAG	2 cut(s)	74, 212
BseNI	ACTGG	2 cut(s)	53, 157
BseSI	GKGCMC	1 cut(s)	80
BseYI	CCCAGC	1 cut(s)	67
BslFI	GGGAC	4 cut(s)	41, 132, 145, 168
BsmFI	GGGAC	4 cut(s)	41, 132, 145, 168
Bsp119I	TTCGAA	1 cut(s)	257
Bsp1286I	GDGCHC	1 cut(s)	80
Bsp143I	GATC	2 cut(s)	130, 135
BspACI	CCGC	2 cut(s)	178, 205
BspCNI	CTCAG	2 cut(s)	73, 213
BspPI	GGATC	1 cut(s)	143
BspT104I	TTCGAA	1 cut(s)	257
BsrI	ACTGG	2 cut(s)	53, 157
BssMI	GATC	2 cut(s)	130, 135
BssNI	GRCGYC	1 cut(s)	181
Bst2UI	CCWGG	1 cut(s)	104
Bst4CI	ACNGT	1 cut(s)	297
BstACI	GRCGYC	1 cut(s)	181
BstBI	TTCGAA	1 cut(s)	257
BstDEI	CTNAG	2 cut(s)	60, 221
BstF5I	GGATG	2 cut(s)	49, 169
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	2 cut(s)	133, 138
BstMBI	GATC	2 cut(s)	130, 135
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNI	CCWGG	1 cut(s)	104
BstSCI	CCNGG	1 cut(s)	102
BstSLI	GKGCMC	1 cut(s)	80
BstV2I	GAAGAC	1 cut(s)	279
BstX2I	RGATCY	1 cut(s)	135
BstYI	RGATCY	1 cut(s)	135
BtsCI	GGATG	2 cut(s)	49, 169
BtsI	GCAGTG	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	190
CfoI	GCGC	1 cut(s)	31
CseI	GACGC	2 cut(s)	60, 170
CviJI	RGCY	3 cut(s)	227, 254, 285
CviKI_1	RGCY	3 cut(s)	227, 254, 285
DdeI	CTNAG	2 cut(s)	60, 221
DpnI	GATC	2 cut(s)	132, 137
DpnII	GATC	2 cut(s)	130, 135
Eco47III	AGCGCT	1 cut(s)	30
EcoRII	CCWGG	1 cut(s)	102
FaiI	YATR	2 cut(s)	7, 36
FaqI	GGGAC	4 cut(s)	41, 132, 145, 168
FblI	GTMKAC	1 cut(s)	43
Fnu4HI	GCNGC	1 cut(s)	179
FokI	GGATG	2 cut(s)	36, 156
Fsp4HI	GCNGC	1 cut(s)	179
FspBI	CTAG	1 cut(s)	239
GlaI	GCGC	1 cut(s)	30
GluI	GCNGC	1 cut(s)	179
GsaI	CCCAGC	1 cut(s)	71
HaeII	RGCGCY	1 cut(s)	32
HgaI	GACGC	2 cut(s)	60, 170
HhaI	GCGC	1 cut(s)	31
Hin1I	GRCGYC	1 cut(s)	181
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
Hpy166II	GTNNAC	2 cut(s)	44, 293
Hpy188I	TCNGA	1 cut(s)	135
Hpy8I	GTNNAC	2 cut(s)	44, 293
Hpy99I	CGWCG	2 cut(s)	76, 291
HpyAV	CCTTC	2 cut(s)	96, 160
HpyCH4III	ACNGT	1 cut(s)	297
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	2 cut(s)	60, 221
Hsp92I	GRCGYC	1 cut(s)	181
HspAI	GCGC	1 cut(s)	29
Kzo9I	GATC	2 cut(s)	130, 135
LmnI	GCTCC	1 cut(s)	36
LpnPI	CCDG	8 cut(s)	39, 66, 81, 89, 116, 170, 282, 290
MaeI	CTAG	1 cut(s)	239
MaeIII	GTNAC	1 cut(s)	9
MalI	GATC	2 cut(s)	132, 137
MboI	GATC	2 cut(s)	130, 135
MboII	GAAGA	3 cut(s)	91, 130, 284
MflI	RGATCY	1 cut(s)	135
MhlI	GDGCHC	1 cut(s)	80
MluCI	AATT	2 cut(s)	37, 230
MnlI	CCTC	5 cut(s)	69, 101, 183, 207, 219
MspR9I	CCNGG	1 cut(s)	104
MvaI	CCWGG	1 cut(s)	104
MwoI	GCNNNNNNNGC	1 cut(s)	233
NdeII	GATC	2 cut(s)	130, 135
NmuCI	GTSAC	1 cut(s)	9
NspV	TTCGAA	1 cut(s)	257
PkrI	GCNGC	1 cut(s)	180
Psp6I	CCWGG	1 cut(s)	102
PspFI	CCCAGC	1 cut(s)	67
PspGI	CCWGG	1 cut(s)	102
PsuI	RGATCY	1 cut(s)	135
SatI	GCNGC	1 cut(s)	179
Sau3AI	GATC	2 cut(s)	130, 135
ScrFI	CCNGG	1 cut(s)	104
SduI	GDGCHC	1 cut(s)	80
SetI	ASST	1 cut(s)	256
SfuI	TTCGAA	1 cut(s)	257
Sse9I	AATT	2 cut(s)	37, 230
SsiI	CCGC	2 cut(s)	178, 205
SspMI	CTAG	1 cut(s)	239
StyD4I	CCNGG	1 cut(s)	102
TaaI	ACNGT	1 cut(s)	297
TaqI	TCGA	2 cut(s)	257, 263
TasI	AATT	2 cut(s)	37, 230
TauI	GCSGC	1 cut(s)	181
TscAI	CASTG	1 cut(s)	197
TseFI	GTSAC	1 cut(s)	9
Tsp45I	GTSAC	1 cut(s)	9
TspDTI	ATGAA	1 cut(s)	38
TspRI	CASTG	1 cut(s)	197
XapI	RAATTY	1 cut(s)	230
XmiI	GTMKAC	1 cut(s)	43
XspI	CTAG	1 cut(s)	239

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.