RLG00000026340

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0012779
Physical Location & Seq
Reverse (-)
2275436 .. 2276539
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026340

Sequence Viewer

Length: 1104 bp
ATGGAAATGGAGTCTAGTAGTTTTCTTTGCCCCATCAAATACACCCAACACAGAAACACCACCAAGAAATTAACAAAACCTTCCCGGAAAATAGAGCCCGGCACTTCCATCGCCCCAAAAATCATTCGGATATCGATGGCCGATCACGACGCCACTGACTCATCCAGCGATGAAGAAGAGACCGAGTACTACTTTGGTCGCCGGAGAGTGAAGCAATACATCAACGAAATCAGCATAGAAACCGACTTGAGAACTAATTCGGAGATCACCAACAATGGCCGGAAAAGGCCTGCCTTAGAGACACGGCCGGCTACTAGGCGGCCAGCACAGAAGACCTCTTGTCCACCGGCCAATGGCGGCGGCAACCGAAAGTTCAGAGGCGTACGACAACGTCCTTGGGGTAAATGGGCGGCCGAGATTAGAGATCCCGGCAAACGTGTAAGACTCTGGTTGGGAACCTTCGACACAGCTGAGGAAGCCGCTATGGTGTACGATAATGCCGCCATTAAACTCCGAGGTCCTGATGCTCAAACGAACTTCTCACCACCGCAAATGGTTGAGACCGTTGCAGACTCGGTTGATGATCAGAATATTGTTACTGAAGTCGAGATTGAGCCGGAAACAACACCAAACGTGACTGTCTCGGTTTCTGGCTATGATTCCGGTGAGGAAACTCATCATCTCTCCTCCCCTACCTCTGTCCTACAGTTCCGAACTCATCCAATCGAAGAGGCCGAGCCACCGCAACTAGAGAAGGCAACAGAGAAGACAGCACTATCACAACCAAACGAGAAAGTAAATCATGTTCGAGAGTGTGGAGTGGAACATAATCAAATTCCAACGGAGTTGCGGTACATGGAAGAAGACGCGTTCAGGTTCCCAACACCAGAGTCCCCCTTCTTAGAGTCACCGCTCTTGTTCGAGTCGCCCTTCTTCGACGACCCCGCCGCCGCCGTGGCCGGACCGCTCCTGTTTGATGACTTCTGCGACTTGTACGCGTTCGCCGACTCGTCTTTTTCTGCTCAGACGACGTCGTCGATGATGTGTCAAGGAGATGACTGTTTTCAAGACATTTTTGGTTCAGACCCTCTAGTGGTCCTCTGA

Protein Analysis

368

Amino Acids

41.15

Weight (kDa)

4.88

Isoelectric Point (pI)

64.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 124 - 173 8.6e-15 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012779)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27950 AT5G53290
fragaria_vesca FvH4_7g30930
malus_domestica MD01G1214500.v1.1 MD07G1284200.v1.1
prunus_persica Prupe.2G306400_v2.0.a1
pyrus_communis pycom01g22510 pycom07g25810
rosa_chinensis RchiOBHm_Chr1g0380021
rosa_laevigata RLG00000026340
rosa_multiflora Rmu_sc0004184.1_g000009
rosa_roxburghii Rroxscaffold_4G00279790
rosa_rugosa Rorug01G0416600
rosa_samantha Rh1AG441100 Rh1BG396800 Rh1CG410000 Rh1DG427600
rosa_wichuraiana Rw1G038360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1033
AatII GACGTC 1 cut(s) 1034
AccBSI CCGCTC 2 cut(s) 913, 967
AccII CGCG 2 cut(s) 869, 998
AclWI GGATC 1 cut(s) 419
AcoI YGGCCR 7 cut(s) 138, 277, 305, 320, 348, 411, 957
AcsI RAATTY 1 cut(s) 834
AcuI CTGAAG 1 cut(s) 621
AcyI GRCGYC 2 cut(s) 150, 1031
AfaI GTAC 5 cut(s) 188, 384, 491, 854, 995
AfiI CCNNNNNNNGG 2 cut(s) 353, 1093
AflIII ACRYGT 3 cut(s) 436, 867, 996
AgsI TTSAA 1 cut(s) 1067
AhdI GACNNNNNGTC 1 cut(s) 339
AluBI AGCT 1 cut(s) 470
AluI AGCT 1 cut(s) 470
Alw26I GTCTC 4 cut(s) 173, 293, 554, 646
AlwI GGATC 1 cut(s) 419
AoxI GGCC 9 cut(s) 138, 277, 287, 305, 320, 348, 411, 732, 957
ApoI RAATTY 1 cut(s) 834
Asp700I GAANNNNTTC 1 cut(s) 256
AspS9I GGNCC 3 cut(s) 518, 962, 1096
AsuC2I CCSGG 3 cut(s) 85, 99, 429
AsuHPI GGTGA 4 cut(s) 259, 534, 677, 900
AvaII GGWCC 3 cut(s) 518, 962, 1096
BanII GRGCYC 1 cut(s) 99
BbsI GAAGAC 3 cut(s) 338, 773, 870
BbvCI CCTCAGC 1 cut(s) 471
BccI CCATC 3 cut(s) 41, 116, 130
BceAI ACGGC 2 cut(s) 320, 938
BcgI CGANNNNNNTGC 2 cut(s) 91, 125
BclI TGATCA 1 cut(s) 583
BcnI CCSGG 3 cut(s) 85, 99, 429
BcoDI GTCTC 4 cut(s) 173, 293, 554, 646
BfaI CTAG 4 cut(s) 15, 315, 749, 1091
BfmI CTRYAG 1 cut(s) 704
BglI GCCNNNNNGGC 1 cut(s) 956
BisI GCNGC 8 cut(s) 320, 358, 361, 411, 480, 501, 948, 951
BlsI GCNGC 8 cut(s) 321, 359, 362, 412, 481, 502, 949, 952
BmcAI AGTACT 1 cut(s) 188
Bme1390I CCNGG 3 cut(s) 85, 99, 429
Bme18I GGWCC 3 cut(s) 518, 962, 1096
BmeRI GACNNNNNGTC 1 cut(s) 339
BmgT120I GGNCC 3 cut(s) 518, 962, 1096
BmiI GGNNCC 2 cut(s) 457, 878
BmrFI CCNGG 3 cut(s) 85, 99, 429
BmsI GCATC 1 cut(s) 514
BpiI GAAGAC 3 cut(s) 338, 773, 870
Bpu10I CCTNAGC 1 cut(s) 471
BpuEI CTTGAG 1 cut(s) 268
BpuMI CCSGG 3 cut(s) 85, 99, 429
Bsa29I ATCGAT 1 cut(s) 134
BsaHI GRCGYC 2 cut(s) 150, 1031
BsaI GGTCTC 2 cut(s) 173, 554
BsaJI CCNNGG 3 cut(s) 395, 514, 954
BsaWI WCCGGW 1 cut(s) 662
BsaXI ACNNNNNCTCC 2 cut(s) 836, 866
Bsc4I CCNNNNNNNGG 2 cut(s) 353, 1093
Bse118I RCCGGY 2 cut(s) 307, 346
BseCI ATCGAT 1 cut(s) 134
BseDI CCNNGG 3 cut(s) 395, 514, 954
BseGI GGATG 2 cut(s) 161, 718
BseLI CCNNNNNNNGG 2 cut(s) 353, 1093
BseMII CTCAG 2 cut(s) 462, 1037
BseRI GAGGAG 1 cut(s) 676
BseX3I CGGCCG 2 cut(s) 305, 411
Bsh1236I CGCG 2 cut(s) 869, 998
Bsh1285I CGRYCG 2 cut(s) 308, 414
BshFI GGCC 9 cut(s) 140, 279, 289, 307, 322, 350, 413, 734, 959
BshVI ATCGAT 1 cut(s) 134
BsiEI CGRYCG 2 cut(s) 308, 414
BsiWI CGTACG 1 cut(s) 382
BslFI GGGAC 1 cut(s) 877
BslI CCNNNNNNNGG 2 cut(s) 353, 1093
BsmAI GTCTC 4 cut(s) 173, 293, 554, 646
BsmFI GGGAC 1 cut(s) 877
BsnI GGCC 9 cut(s) 140, 279, 289, 307, 322, 350, 413, 734, 959
Bso31I GGTCTC 2 cut(s) 173, 554
Bsp1286I GDGCHC 1 cut(s) 99
Bsp143I GATC 4 cut(s) 142, 264, 424, 583
BspANI GGCC 9 cut(s) 140, 279, 289, 307, 322, 350, 413, 734, 959
BspCNI CTCAG 2 cut(s) 463, 1036
BspDI ATCGAT 1 cut(s) 134
BspFNI CGCG 2 cut(s) 869, 998
BspLI GGNNCC 2 cut(s) 457, 878
BspPI GGATC 1 cut(s) 419
BspTNI GGTCTC 2 cut(s) 173, 554
BsrBI CCGCTC 2 cut(s) 913, 967
BsrFI RCCGGY 2 cut(s) 307, 346
BssAI RCCGGY 2 cut(s) 307, 346
BssECI CCNNGG 3 cut(s) 395, 514, 954
BssMI GATC 4 cut(s) 142, 264, 424, 583
BssNI GRCGYC 2 cut(s) 150, 1031
BssT1I CCWWGG 1 cut(s) 395
Bst4CI ACNGT 4 cut(s) 565, 640, 708, 1061
Bst6I CTCTTC 2 cut(s) 171, 723
BstACI GRCGYC 2 cut(s) 150, 1031
BstC8I GCNNGC 3 cut(s) 291, 309, 324
BstDEI CTNAG 4 cut(s) 295, 471, 901, 1023
BstDSI CCRYGG 1 cut(s) 954
BstF5I GGATG 2 cut(s) 161, 718
BstFNI CGCG 2 cut(s) 869, 998
BstKTI GATC 4 cut(s) 145, 267, 427, 586
BstMAI GTCTC 4 cut(s) 173, 293, 554, 646
BstMBI GATC 4 cut(s) 142, 264, 424, 583
BstMCI CGRYCG 2 cut(s) 308, 414
BstMWI GCNNNNNNNGC 2 cut(s) 476, 956
BstSCI CCNGG 3 cut(s) 83, 97, 427
BstSFI CTRYAG 1 cut(s) 704
BstUI CGCG 2 cut(s) 869, 998
BstV2I GAAGAC 3 cut(s) 338, 773, 870
BstX2I RGATCY 1 cut(s) 424
BstYI RGATCY 1 cut(s) 424
BstZI CGGCCG 2 cut(s) 305, 411
Bsu15I ATCGAT 1 cut(s) 134
BsuRI GGCC 9 cut(s) 140, 279, 289, 307, 322, 350, 413, 734, 959
BsuTUI ATCGAT 1 cut(s) 134
BtgI CCRYGG 1 cut(s) 954
BtgZI GCGATG 2 cut(s) 94, 183
BtsCI GGATG 2 cut(s) 161, 718
BtsIMutI CAGTG 1 cut(s) 153
Cac8I GCNNGC 3 cut(s) 291, 309, 324
Cfr10I RCCGGY 2 cut(s) 307, 346
Cfr13I GGNCC 3 cut(s) 518, 962, 1096
ClaI ATCGAT 1 cut(s) 134
CpoI CGGWCCG 1 cut(s) 962
CseI GACGC 2 cut(s) 158, 875
Csp6I GTAC 5 cut(s) 187, 383, 490, 853, 994
CspI CGGWCCG 1 cut(s) 962
CviAII CATG 2 cut(s) 803, 856
CviQI GTAC 5 cut(s) 187, 383, 490, 853, 994
DdeI CTNAG 4 cut(s) 295, 471, 901, 1023
DpnI GATC 4 cut(s) 144, 266, 426, 585
DpnII GATC 4 cut(s) 142, 264, 424, 583
DrdI GACNNNNNNGTC 1 cut(s) 1033
DriI GACNNNNNGTC 1 cut(s) 339
DseDI GACNNNNNNGTC 1 cut(s) 1033
EaeI YGGCCR 7 cut(s) 138, 277, 305, 320, 348, 411, 957
EagI CGGCCG 2 cut(s) 305, 411
Eam1104I CTCTTC 2 cut(s) 171, 723
Eam1105I GACNNNNNGTC 1 cut(s) 339
EarI CTCTTC 2 cut(s) 171, 723
EclXI CGGCCG 2 cut(s) 305, 411
Eco130I CCWWGG 1 cut(s) 395
Eco147I AGGCCT 1 cut(s) 289
Eco24I GRGCYC 1 cut(s) 99
Eco31I GGTCTC 2 cut(s) 173, 554
Eco32I GATATC 1 cut(s) 132
Eco47I GGWCC 3 cut(s) 518, 962, 1096
Eco52I CGGCCG 2 cut(s) 305, 411
Eco57I CTGAAG 1 cut(s) 621
EcoO109I RGGNCCY 1 cut(s) 518
EcoRV GATATC 1 cut(s) 132
EcoT14I CCWWGG 1 cut(s) 395
EcoT38I GRGCYC 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 395
FaeI CATG 2 cut(s) 806, 859
FaiI YATR 6 cut(s) 236, 485, 657, 804, 828, 857
FaqI GGGAC 1 cut(s) 877
FatI CATG 2 cut(s) 802, 855
FauI CCCGC 1 cut(s) 952
FbaI TGATCA 1 cut(s) 583
Fnu4HI GCNGC 8 cut(s) 320, 358, 361, 411, 480, 501, 948, 951
FokI GGATG 2 cut(s) 148, 705
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 8 cut(s) 320, 358, 361, 411, 480, 501, 948, 951
FspBI CTAG 4 cut(s) 15, 315, 749, 1091
GluI GCNGC 8 cut(s) 320, 358, 361, 411, 480, 501, 948, 951
HaeIII GGCC 9 cut(s) 140, 279, 289, 307, 322, 350, 413, 734, 959
HgaI GACGC 2 cut(s) 158, 875
Hin1I GRCGYC 2 cut(s) 150, 1031
Hin1II CATG 2 cut(s) 806, 859
HinfI GANTC 9 cut(s) 11, 158, 444, 572, 659, 890, 905, 923, 1007
HphI GGTGA 4 cut(s) 259, 534, 677, 900
Hpy166II GTNNAC 2 cut(s) 344, 490
Hpy188I TCNGA 9 cut(s) 129, 262, 377, 515, 588, 713, 1026, 1084, 1103
Hpy188III TCNNGA 5 cut(s) 146, 521, 607, 809, 1067
Hpy8I GTNNAC 2 cut(s) 344, 490
Hpy99I CGWCG 5 cut(s) 152, 941, 1033, 1036, 1039
HpyAV CCTTC 5 cut(s) 90, 469, 748, 907, 940
HpyCH4III ACNGT 4 cut(s) 565, 640, 708, 1061
HpyCH4IV ACGT 4 cut(s) 391, 436, 633, 1031
HpyCH4V TGCA 1 cut(s) 569
HpyF10VI GCNNNNNNNGC 2 cut(s) 476, 956
HpyF3I CTNAG 4 cut(s) 295, 471, 901, 1023
HpySE526I ACGT 4 cut(s) 391, 436, 633, 1031
Hsp92I GRCGYC 2 cut(s) 150, 1031
Hsp92II CATG 2 cut(s) 806, 859
KroI GCCGGC 1 cut(s) 307
KroNI GCCGGC 1 cut(s) 309
Ksp22I TGATCA 1 cut(s) 583
Kzo9I GATC 4 cut(s) 142, 264, 424, 583
LmnI GCTCC 1 cut(s) 972
LweI GCATC 1 cut(s) 514
MaeI CTAG 4 cut(s) 15, 315, 749, 1091
MaeII ACGT 4 cut(s) 391, 436, 633, 1031
MaeIII GTNAC 3 cut(s) 595, 634, 906
MalI GATC 4 cut(s) 144, 266, 426, 585
MbiI CCGCTC 2 cut(s) 913, 967
MboI GATC 4 cut(s) 142, 264, 424, 583
MboII GAAGA 8 cut(s) 185, 188, 343, 740, 778, 872, 875, 925
MflI RGATCY 1 cut(s) 424
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 3 cut(s) 68, 256, 834
MluI ACGCGT 2 cut(s) 867, 996
MlyI GAGTC 8 cut(s) 20, 152, 438, 566, 899, 914, 932, 1001
MmeI TCCRAC 1 cut(s) 863
MnlI CCTC 9 cut(s) 346, 371, 466, 509, 661, 697, 706, 724, 1098
MroNI GCCGGC 1 cut(s) 307
MroXI GAANNNNTTC 1 cut(s) 256
MseI TTAA 2 cut(s) 71, 507
MspA1I CMGCKG 1 cut(s) 470
MspR9I CCNGG 3 cut(s) 85, 99, 429
MvnI CGCG 2 cut(s) 869, 998
MwoI GCNNNNNNNGC 2 cut(s) 476, 956
NaeI GCCGGC 1 cut(s) 309
NciI CCSGG 3 cut(s) 85, 99, 429
NdeII GATC 4 cut(s) 142, 264, 424, 583
NgoMIV GCCGGC 1 cut(s) 307
NlaIII CATG 2 cut(s) 806, 859
NlaIV GGNNCC 2 cut(s) 457, 878
NmeAIII GCCGAG 2 cut(s) 439, 760
NmuCI GTSAC 2 cut(s) 634, 906
PceI AGGCCT 1 cut(s) 289
PcsI WCGNNNNNNNCGW 3 cut(s) 732, 1002, 1034
PdiI GCCGGC 1 cut(s) 309
PdmI GAANNNNTTC 1 cut(s) 256
PfeI GAWTC 1 cut(s) 659
Pfl23II CGTACG 1 cut(s) 382
PflFI GACNNNGTC 3 cut(s) 390, 1030, 1033
PfoI TCCNGGA 1 cut(s) 83
PkrI GCNGC 8 cut(s) 321, 359, 362, 412, 481, 502, 949, 952
PleI GAGTC 8 cut(s) 19, 152, 438, 566, 898, 913, 931, 1001
PpsI GAGTC 8 cut(s) 19, 152, 438, 566, 898, 913, 931, 1001
PpuMI RGGWCCY 1 cut(s) 518
Psp5II RGGWCCY 1 cut(s) 518
PspLI CGTACG 1 cut(s) 382
PspN4I GGNNCC 2 cut(s) 457, 878
PspPI GGNCC 3 cut(s) 518, 962, 1096
PspPPI RGGWCCY 1 cut(s) 518
PsrI GAACNNNNNNTAC 2 cut(s) 789, 821
PsuI RGATCY 1 cut(s) 424
PsyI GACNNNGTC 3 cut(s) 390, 1030, 1033
PvuII CAGCTG 1 cut(s) 470
RsaI GTAC 5 cut(s) 188, 384, 491, 854, 995
RsaNI GTAC 5 cut(s) 187, 383, 490, 853, 994
Rsr2I CGGWCCG 1 cut(s) 962
RsrII CGGWCCG 1 cut(s) 962
SaqAI TTAA 2 cut(s) 71, 507
SatI GCNGC 8 cut(s) 320, 358, 361, 411, 480, 501, 948, 951
Sau3AI GATC 4 cut(s) 142, 264, 424, 583
Sau96I GGNCC 3 cut(s) 518, 962, 1096
ScaI AGTACT 1 cut(s) 188
SchI GAGTC 8 cut(s) 20, 152, 438, 566, 899, 914, 932, 1001
ScrFI CCNGG 3 cut(s) 85, 99, 429
SduI GDGCHC 1 cut(s) 99
SfaNI GCATC 1 cut(s) 514
SfcI CTRYAG 1 cut(s) 704
SinI GGWCC 3 cut(s) 518, 962, 1096
SmlI CTYRAG 1 cut(s) 247
SmoI CTYRAG 1 cut(s) 247
Sse9I AATT 3 cut(s) 68, 256, 834
SseBI AGGCCT 1 cut(s) 289
SspI AATATT 1 cut(s) 592
SspMI CTAG 4 cut(s) 15, 315, 749, 1091
StuI AGGCCT 1 cut(s) 289
StyD4I CCNGG 3 cut(s) 83, 97, 427
StyI CCWWGG 1 cut(s) 395
TaaI ACNGT 4 cut(s) 565, 640, 708, 1061
TaiI ACGT 4 cut(s) 394, 439, 636, 1034
TaqI TCGA 8 cut(s) 134, 462, 606, 726, 808, 921, 936, 1037
TaqII GACCGA 1 cut(s) 197
TasI AATT 3 cut(s) 68, 256, 834
TatI WGTACW 1 cut(s) 186
TauI GCSGC 8 cut(s) 322, 360, 363, 413, 482, 503, 950, 953
TfiI GAWTC 1 cut(s) 659
Tru1I TTAA 2 cut(s) 71, 507
Tru9I TTAA 2 cut(s) 71, 507
TscAI CASTG 1 cut(s) 160
TseFI GTSAC 2 cut(s) 634, 906
Tsp45I GTSAC 2 cut(s) 634, 906
TspDTI ATGAA 1 cut(s) 186
TspGWI ACGGA 1 cut(s) 857
TspRI CASTG 1 cut(s) 160
Tth111I GACNNNGTC 3 cut(s) 390, 1030, 1033
VpaK11BI GGWCC 3 cut(s) 518, 962, 1096
XapI RAATTY 1 cut(s) 834
XmnI GAANNNNTTC 1 cut(s) 256
XspI CTAG 4 cut(s) 15, 315, 749, 1091
ZraI GACGTC 1 cut(s) 1032
ZrmI AGTACT 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.