FvH4_7g30930

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0012779
Physical Location & Seq
Forward (+)
22420672 .. 22422572
1901 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g30930.t1

Sequence Viewer

Length: 1107 bp
ATGGAATTGGAGTCCAGTAGTTTCCTTTGCCCCATCAAATACACCCAACACAGAAACACCACCAAGAAATTAACCAAACCGTCCCGGAAAGTAGAGCCCGGCACTTCCATCGCCCCTAAGATTGTGCGCATATCGATGACCGATCACGACGCCACTGACTCATCCAGCGATGAAGAAGAGGGTGAGTTCTACTTTGGTCGCCGGAGAGTGAAGAAGTATATCAACGAAATCAGCATAGAAACCGACTTGAGAACTAGTCCGGTGATCACCAACAATGGCCGGAAAAGGCCTGCCTTAGAGACACGGCCGGCTACTAGGCGGCCCGCTCAGAAGACCACTCCTTGTCAACCGGCCAATGGCGGCAACCGGAAGTTCAGAGGCGTAAGACAACGACCTTGGGGTAAATGGGCCGCCGAGATTAGAGATCCGGGGAAACGTGTAAGACTGTGGTTGGGAACCTTTGACACGGCTGAGGAAGCGGCTATGGTGTACGATAATGCCGCCATTAAGCTCCGAGGTCCTGATGCTCAAACAAATTTCTCCTCACCGCCGCAAATAGTTGTAACCGCTGCTGACTCGGTTGATGCGAAGAACATAGTCAATGAAGTCGAGATTGAGCCGGAAACGACGACACCAAACGTGACTGTGTCGGTTTCTGGTTATGATTCCGGTGAGGAAACTCATCATCTCTCCTCCCCCACCTCCGTCCTACAGTTCAGAACTCATTCCATGGACGATGCGGAGCAAATGGAGAAGCCATCACTACAACCAGAACCAGCAACCGAGAAAGCAAATCATGTTCAAGAGTGTCAAGTCCAACAACAGCTTCCAACGGTGTTGCCGTACATGGAGGAGGAACAAGAAGACGGGTTCAGGTTCCCAACACCGGAGTCCCCCATTTTCGAGTCACCGCTCTTCTACGAGTCACCGTTCTTCGACGACACGGCGGTTCCCGGACCACTCATGTTCGATGACTTCAGCGACTTGTTCCGGATGGACACGTTCGGCCCGTCGTCCTTTTCTGCTCAGACGACGTCGTCCATGATGTGTCAAGCAGATGACTGTTTTCAAGACATTTTTGGCTCAGACCCTCTAGTGGTCCTCTGA

Protein Analysis

369

Amino Acids

41.29

Weight (kDa)

4.94

Isoelectric Point (pI)

61.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 124 - 173 8.7e-15 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012779)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27950 AT5G53290
fragaria_vesca FvH4_7g30930
malus_domestica MD01G1214500.v1.1 MD07G1284200.v1.1
prunus_persica Prupe.2G306400_v2.0.a1
pyrus_communis pycom01g22510 pycom07g25810
rosa_chinensis RchiOBHm_Chr1g0380021
rosa_laevigata RLG00000026340
rosa_multiflora Rmu_sc0004184.1_g000009
rosa_roxburghii Rroxscaffold_4G00279790
rosa_rugosa Rorug01G0416600
rosa_samantha Rh1AG441100 Rh1BG396800 Rh1CG410000 Rh1DG427600
rosa_wichuraiana Rw1G038360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1036
AatII GACGTC 1 cut(s) 1037
Acc16I TGCGCA 1 cut(s) 128
AccBSI CCGCTC 2 cut(s) 326, 913
AccIII TCCGGA 1 cut(s) 990
AclWI GGATC 1 cut(s) 419
AcoI YGGCCR 3 cut(s) 277, 305, 351
AcsI RAATTY 1 cut(s) 535
AcuI CTGAAG 1 cut(s) 961
AcyI GRCGYC 2 cut(s) 150, 1034
AfaI GTAC 2 cut(s) 491, 845
AfiI CCNNNNNNNGG 3 cut(s) 356, 886, 1096
AflIII ACRYGT 2 cut(s) 436, 999
AgsI TTSAA 2 cut(s) 803, 1070
AhlI ACTAGT 1 cut(s) 254
AjuI GAANNNNNNNTTGG 2 cut(s) 810, 842
AluBI AGCT 2 cut(s) 511, 826
AluI AGCT 2 cut(s) 511, 826
Alw26I GTCTC 1 cut(s) 293
AlwI GGATC 1 cut(s) 419
Aor13HI TCCGGA 1 cut(s) 990
AoxI GGCC 7 cut(s) 277, 287, 305, 320, 351, 408, 1006
ApeKI GCWGC 1 cut(s) 569
ApoI RAATTY 1 cut(s) 535
Asp700I GAANNNNTTC 1 cut(s) 724
AspLEI GCGC 1 cut(s) 129
AspS9I GGNCC 6 cut(s) 321, 408, 518, 956, 1007, 1099
AsuC2I CCSGG 4 cut(s) 85, 99, 429, 954
AsuHPI GGTGA 7 cut(s) 194, 259, 274, 537, 683, 900, 918
AvaII GGWCC 3 cut(s) 518, 956, 1099
BanII GRGCYC 1 cut(s) 99
BbsI GAAGAC 2 cut(s) 338, 870
BbvCI CCTCAGC 1 cut(s) 471
BbvI GCAGC 1 cut(s) 556
BccI CCATC 4 cut(s) 41, 116, 766, 988
BceAI ACGGC 4 cut(s) 320, 483, 826, 960
BcgI CGANNNNNNTGC 2 cut(s) 91, 125
BclI TGATCA 1 cut(s) 264
BcnI CCSGG 4 cut(s) 85, 99, 429, 954
BcoDI GTCTC 1 cut(s) 293
BcuI ACTAGT 1 cut(s) 254
BfaI CTAG 3 cut(s) 255, 315, 1094
BfmI CTRYAG 1 cut(s) 710
BisI GCNGC 7 cut(s) 320, 361, 411, 480, 501, 551, 570
BlsI GCNGC 7 cut(s) 321, 362, 412, 481, 502, 552, 571
Bme1390I CCNGG 4 cut(s) 85, 99, 429, 954
Bme18I GGWCC 3 cut(s) 518, 956, 1099
BmgT120I GGNCC 6 cut(s) 321, 408, 518, 956, 1007, 1099
BmiI GGNNCC 3 cut(s) 457, 878, 951
BmrFI CCNGG 4 cut(s) 85, 99, 429, 954
BmsI GCATC 3 cut(s) 514, 574, 727
BpiI GAAGAC 2 cut(s) 338, 870
Bpu10I CCTNAGC 1 cut(s) 471
BpuEI CTTGAG 1 cut(s) 268
BpuMI CCSGG 4 cut(s) 85, 99, 429, 954
Bsa29I ATCGAT 1 cut(s) 134
BsaHI GRCGYC 2 cut(s) 150, 1034
BsaJI CCNNGG 4 cut(s) 395, 428, 514, 729
BsaWI WCCGGW 5 cut(s) 259, 366, 668, 886, 990
Bsc4I CCNNNNNNNGG 3 cut(s) 356, 886, 1096
Bse118I RCCGGY 2 cut(s) 307, 349
Bse1I ACTGG 1 cut(s) 15
BseAI TCCGGA 1 cut(s) 990
BseCI ATCGAT 1 cut(s) 134
BseDI CCNNGG 4 cut(s) 395, 428, 514, 729
BseGI GGATG 2 cut(s) 161, 999
BseLI CCNNNNNNNGG 3 cut(s) 356, 886, 1096
BseMII CTCAG 4 cut(s) 341, 462, 1040, 1098
BseNI ACTGG 1 cut(s) 15
BseRI GAGGAG 3 cut(s) 532, 682, 866
BseX3I CGGCCG 1 cut(s) 305
BseXI GCAGC 1 cut(s) 556
Bsh1285I CGRYCG 1 cut(s) 308
BshFI GGCC 7 cut(s) 279, 289, 307, 322, 353, 410, 1008
BshVI ATCGAT 1 cut(s) 134
BsiEI CGRYCG 1 cut(s) 308
BslFI GGGAC 2 cut(s) 67, 877
BslI CCNNNNNNNGG 3 cut(s) 356, 886, 1096
BsmAI GTCTC 1 cut(s) 293
BsmFI GGGAC 2 cut(s) 67, 877
BsnI GGCC 7 cut(s) 279, 289, 307, 322, 353, 410, 1008
Bsp1286I GDGCHC 1 cut(s) 99
Bsp13I TCCGGA 1 cut(s) 990
Bsp143I GATC 3 cut(s) 142, 264, 424
Bsp19I CCATGG 1 cut(s) 729
BspANI GGCC 7 cut(s) 279, 289, 307, 322, 353, 410, 1008
BspCNI CTCAG 4 cut(s) 340, 463, 1039, 1097
BspDI ATCGAT 1 cut(s) 134
BspEI TCCGGA 1 cut(s) 990
BspLI GGNNCC 3 cut(s) 457, 878, 951
BspPI GGATC 1 cut(s) 419
BspQI GCTCTTC 1 cut(s) 920
BsrBI CCGCTC 2 cut(s) 326, 913
BsrFI RCCGGY 2 cut(s) 307, 349
BsrI ACTGG 1 cut(s) 15
BssAI RCCGGY 2 cut(s) 307, 349
BssECI CCNNGG 4 cut(s) 395, 428, 514, 729
BssMI GATC 3 cut(s) 142, 264, 424
BssNI GRCGYC 2 cut(s) 150, 1034
BssT1I CCWWGG 2 cut(s) 395, 729
Bst4CI ACNGT 7 cut(s) 81, 447, 646, 714, 835, 930, 1064
Bst6I CTCTTC 2 cut(s) 171, 920
BstACI GRCGYC 2 cut(s) 150, 1034
BstC8I GCNNGC 3 cut(s) 291, 309, 324
BstDEI CTNAG 6 cut(s) 117, 295, 327, 471, 1026, 1084
BstDSI CCRYGG 1 cut(s) 729
BstF5I GGATG 2 cut(s) 161, 999
BstHHI GCGC 1 cut(s) 129
BstKTI GATC 3 cut(s) 145, 267, 427
BstMAI GTCTC 1 cut(s) 293
BstMBI GATC 3 cut(s) 142, 264, 424
BstMCI CGRYCG 1 cut(s) 308
BstMWI GCNNNNNNNGC 1 cut(s) 476
BstSCI CCNGG 4 cut(s) 83, 97, 427, 952
BstSFI CTRYAG 1 cut(s) 710
BstV1I GCAGC 1 cut(s) 556
BstV2I GAAGAC 2 cut(s) 338, 870
BstX2I RGATCY 1 cut(s) 424
BstYI RGATCY 1 cut(s) 424
BstZI CGGCCG 1 cut(s) 305
Bsu15I ATCGAT 1 cut(s) 134
BsuRI GGCC 7 cut(s) 279, 289, 307, 322, 353, 410, 1008
BsuTUI ATCGAT 1 cut(s) 134
BtgI CCRYGG 1 cut(s) 729
BtgZI GCGATG 2 cut(s) 94, 183
BtsCI GGATG 2 cut(s) 161, 999
BtsIMutI CAGTG 1 cut(s) 153
Cac8I GCNNGC 3 cut(s) 291, 309, 324
CfoI GCGC 1 cut(s) 129
Cfr10I RCCGGY 2 cut(s) 307, 349
Cfr13I GGNCC 6 cut(s) 321, 408, 518, 956, 1007, 1099
ClaI ATCGAT 1 cut(s) 134
CseI GACGC 1 cut(s) 158
Csp6I GTAC 2 cut(s) 490, 844
CviAII CATG 5 cut(s) 730, 797, 847, 964, 1042
CviQI GTAC 2 cut(s) 490, 844
DdeI CTNAG 6 cut(s) 117, 295, 327, 471, 1026, 1084
DpnI GATC 3 cut(s) 144, 266, 426
DpnII GATC 3 cut(s) 142, 264, 424
DrdI GACNNNNNNGTC 1 cut(s) 1036
DseDI GACNNNNNNGTC 1 cut(s) 1036
EaeI YGGCCR 3 cut(s) 277, 305, 351
EagI CGGCCG 1 cut(s) 305
Eam1104I CTCTTC 2 cut(s) 171, 920
EarI CTCTTC 2 cut(s) 171, 920
EclXI CGGCCG 1 cut(s) 305
Eco130I CCWWGG 2 cut(s) 395, 729
Eco147I AGGCCT 1 cut(s) 289
Eco24I GRGCYC 1 cut(s) 99
Eco47I GGWCC 3 cut(s) 518, 956, 1099
Eco52I CGGCCG 1 cut(s) 305
Eco57I CTGAAG 1 cut(s) 961
EcoO109I RGGNCCY 1 cut(s) 518
EcoT14I CCWWGG 2 cut(s) 395, 729
EcoT38I GRGCYC 1 cut(s) 99
ErhI CCWWGG 2 cut(s) 395, 729
FaeI CATG 5 cut(s) 733, 800, 850, 967, 1045
FaqI GGGAC 2 cut(s) 67, 877
FatI CATG 5 cut(s) 729, 796, 846, 963, 1041
FauI CCCGC 1 cut(s) 331
FbaI TGATCA 1 cut(s) 264
Fnu4HI GCNGC 7 cut(s) 320, 361, 411, 480, 501, 551, 570
FokI GGATG 2 cut(s) 148, 1006
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 7 cut(s) 320, 361, 411, 480, 501, 551, 570
FspAI RTGCGCAY 1 cut(s) 128
FspBI CTAG 3 cut(s) 255, 315, 1094
FspI TGCGCA 1 cut(s) 128
GlaI GCGC 1 cut(s) 128
GluI GCNGC 7 cut(s) 320, 361, 411, 480, 501, 551, 570
HaeIII GGCC 7 cut(s) 279, 289, 307, 322, 353, 410, 1008
HgaI GACGC 1 cut(s) 158
HhaI GCGC 1 cut(s) 129
Hin1I GRCGYC 2 cut(s) 150, 1034
Hin1II CATG 5 cut(s) 733, 800, 850, 967, 1045
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HincII GTYRAC 1 cut(s) 347
HindII GTYRAC 1 cut(s) 347
HinfI GANTC 7 cut(s) 11, 158, 575, 665, 890, 905, 923
HphI GGTGA 7 cut(s) 194, 259, 274, 537, 683, 900, 918
Hpy166II GTNNAC 2 cut(s) 347, 490
Hpy188I TCNGA 7 cut(s) 330, 377, 515, 719, 1029, 1087, 1106
Hpy188III TCNNGA 6 cut(s) 146, 521, 610, 803, 991, 1070
Hpy8I GTNNAC 2 cut(s) 347, 490
Hpy99I CGWCG 6 cut(s) 152, 631, 941, 1015, 1036, 1039
HpyCH4III ACNGT 7 cut(s) 81, 447, 646, 714, 835, 930, 1064
HpyCH4IV ACGT 4 cut(s) 436, 639, 1001, 1034
HpyF10VI GCNNNNNNNGC 1 cut(s) 476
HpyF3I CTNAG 6 cut(s) 117, 295, 327, 471, 1026, 1084
HpySE526I ACGT 4 cut(s) 436, 639, 1001, 1034
Hsp92I GRCGYC 2 cut(s) 150, 1034
Hsp92II CATG 5 cut(s) 733, 800, 850, 967, 1045
HspAI GCGC 1 cut(s) 127
Kpn2I TCCGGA 1 cut(s) 990
KroI GCCGGC 1 cut(s) 307
KroNI GCCGGC 1 cut(s) 309
Ksp22I TGATCA 1 cut(s) 264
Kzo9I GATC 3 cut(s) 142, 264, 424
LguI GCTCTTC 1 cut(s) 920
LmnI GCTCC 2 cut(s) 516, 742
Lsp1109I GCAGC 1 cut(s) 556
LweI GCATC 3 cut(s) 514, 574, 727
MaeI CTAG 3 cut(s) 255, 315, 1094
MaeII ACGT 4 cut(s) 436, 639, 1001, 1034
MaeIII GTNAC 4 cut(s) 562, 640, 906, 924
MalI GATC 3 cut(s) 144, 266, 426
MbiI CCGCTC 2 cut(s) 326, 913
MboI GATC 3 cut(s) 142, 264, 424
MboII GAAGA 8 cut(s) 185, 188, 223, 343, 601, 875, 907, 925
MflI RGATCY 1 cut(s) 424
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 3 cut(s) 5, 68, 535
MlyI GAGTC 6 cut(s) 20, 152, 569, 899, 914, 932
MmeI TCCRAC 2 cut(s) 841, 854
MroI TCCGGA 1 cut(s) 990
MroNI GCCGGC 1 cut(s) 307
MroXI GAANNNNTTC 1 cut(s) 724
MseI TTAA 2 cut(s) 71, 507
MslI CAYNNNNRTG 1 cut(s) 134
MspA1I CMGCKG 1 cut(s) 569
MspR9I CCNGG 4 cut(s) 85, 99, 429, 954
MwoI GCNNNNNNNGC 1 cut(s) 476
NaeI GCCGGC 1 cut(s) 309
NciI CCSGG 4 cut(s) 85, 99, 429, 954
NcoI CCATGG 1 cut(s) 729
NdeII GATC 3 cut(s) 142, 264, 424
NgoMIV GCCGGC 1 cut(s) 307
NlaIII CATG 5 cut(s) 733, 800, 850, 967, 1045
NlaIV GGNNCC 3 cut(s) 457, 878, 951
NmeAIII GCCGAG 1 cut(s) 439
NmuCI GTSAC 3 cut(s) 640, 906, 924
NsbI TGCGCA 1 cut(s) 128
PceI AGGCCT 1 cut(s) 289
PciSI GCTCTTC 1 cut(s) 920
PcsI WCGNNNNNNNCGW 3 cut(s) 584, 839, 1007
PdiI GCCGGC 1 cut(s) 309
PdmI GAANNNNTTC 1 cut(s) 724
PfeI GAWTC 1 cut(s) 665
PflFI GACNNNGTC 3 cut(s) 646, 1033, 1036
PfoI TCCNGGA 2 cut(s) 83, 952
PkrI GCNGC 7 cut(s) 321, 362, 412, 481, 502, 552, 571
PleI GAGTC 6 cut(s) 19, 152, 569, 898, 913, 931
PpsI GAGTC 6 cut(s) 19, 152, 569, 898, 913, 931
PpuMI RGGWCCY 1 cut(s) 518
Psp5II RGGWCCY 1 cut(s) 518
PspN4I GGNNCC 3 cut(s) 457, 878, 951
PspPI GGNCC 6 cut(s) 321, 408, 518, 956, 1007, 1099
PspPPI RGGWCCY 1 cut(s) 518
PsuI RGATCY 1 cut(s) 424
PsyI GACNNNGTC 3 cut(s) 646, 1033, 1036
RsaI GTAC 2 cut(s) 491, 845
RsaNI GTAC 2 cut(s) 490, 844
RseI CAYNNNNRTG 1 cut(s) 134
SapI GCTCTTC 1 cut(s) 920
SaqAI TTAA 2 cut(s) 71, 507
SatI GCNGC 7 cut(s) 320, 361, 411, 480, 501, 551, 570
Sau3AI GATC 3 cut(s) 142, 264, 424
Sau96I GGNCC 6 cut(s) 321, 408, 518, 956, 1007, 1099
SchI GAGTC 6 cut(s) 20, 152, 569, 899, 914, 932
ScrFI CCNGG 4 cut(s) 85, 99, 429, 954
SduI GDGCHC 1 cut(s) 99
SfaNI GCATC 3 cut(s) 514, 574, 727
SfcI CTRYAG 1 cut(s) 710
SinI GGWCC 3 cut(s) 518, 956, 1099
SmiMI CAYNNNNRTG 1 cut(s) 134
SmlI CTYRAG 1 cut(s) 247
SmoI CTYRAG 1 cut(s) 247
SpeI ACTAGT 1 cut(s) 254
Sse9I AATT 3 cut(s) 5, 68, 535
SseBI AGGCCT 1 cut(s) 289
SspMI CTAG 3 cut(s) 255, 315, 1094
StuI AGGCCT 1 cut(s) 289
StyD4I CCNGG 4 cut(s) 83, 97, 427, 952
StyI CCWWGG 2 cut(s) 395, 729
TaaI ACNGT 7 cut(s) 81, 447, 646, 714, 835, 930, 1064
TaiI ACGT 4 cut(s) 439, 642, 1004, 1037
TaqI TCGA 5 cut(s) 134, 609, 903, 936, 969
TaqII GACCGA 1 cut(s) 155
TasI AATT 3 cut(s) 5, 68, 535
TauI GCSGC 6 cut(s) 322, 363, 413, 482, 503, 553
TfiI GAWTC 1 cut(s) 665
Tru1I TTAA 2 cut(s) 71, 507
Tru9I TTAA 2 cut(s) 71, 507
TscAI CASTG 1 cut(s) 160
TseFI GTSAC 3 cut(s) 640, 906, 924
TseI GCWGC 1 cut(s) 569
Tsp45I GTSAC 3 cut(s) 640, 906, 924
TspDTI ATGAA 2 cut(s) 186, 618
TspGWI ACGGA 1 cut(s) 694
TspRI CASTG 1 cut(s) 160
Tth111I GACNNNGTC 3 cut(s) 646, 1033, 1036
VpaK11BI GGWCC 3 cut(s) 518, 956, 1099
XapI RAATTY 1 cut(s) 535
XmnI GAANNNNTTC 1 cut(s) 724
XspI CTAG 3 cut(s) 255, 315, 1094
ZraI GACGTC 1 cut(s) 1035
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.