Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0012779

Physical Location & Seq

Genomic Coordinates Forward (+)

26005683 .. 26006744

Gene Structure 1062 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g25810.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGAGTCGAGTATTCTGTGTCCAATCAAATACTCAGAGCACAGAAGCACGACAAAGAAACTGATGAAACCTCGGAAGAAGGCGGCATCCGAGTCCGCTTCCACGGTCACGCGGAGAATCGTACGGATATCTGTGACCGATCCGGACGCCACGGACTCCTCCAGCGACGAAGAGGAGGAGTTTTTCGGGCGGCAGAGAGTGAAGCACTACATCAACGAAATCAACATCGAGACCGACTTCAGGAACAGCCTTGTCATCAACAACGCCCGCAAACGGCCGGCGGCTGAGATTCCAGTGAATCGGCGGCCGATGAAGAACGCGGTTTCGCCGACCAACGGCGGAAAGAAGTACCGCGGCGTAAGGCAACGCCCTTGGGGGAAGTGGGCGGCCGAAATTAGAGATCCTGCTAGACGTCAACGGCTGTGGTTGGGGACCTTCGACACGGCAGAGGAAGCCGCCATGGTGTACGATAATGCCGCCATTAAGCTCCGCGGTCCTGATGCTTTGACTAATTTCGTTGCTCCGCCGCAGAAGGAAGAGGAAAAACCAGAGCCACCGGTCACTGAGCCTATCGAGGTGGAGACTAACGAAACGACGTCGGCTTCTGGTTACGATTCCGGGTCCGAGTCTCACAATCTGGCGTCTCCAACCTCCGTCCTCCACTTCAGAAACCAACCCATCATTGAAGAAGCTGACAAGCCCCAAAAATTTCAGGTGTCCAACCGAGTCGATGAGGACGAAGACGAAACCAAAACCGGTACGAACATTTTATCCGACGATTTGTCATATTTCGGTAACTATTTGCCTCTGGACTTGCCGTACTTCGACGACGCATTCAGTTTCCCAGCTCCGGAGTCGCCGCTGTTCGATTCGCCTCTGTTTTTCGACGACGGCCCCGCCGCGGCAGCCTCTCTTCCGGATTGTTTTATGAAGGACGATTTCAGCGAGTTGTTCCGAGACACGTACGACACGTCGTTGTCCCATACGACGTCGCCTATGTACCAAGGGGATGACTACTTTCAAGACATTTTGTTTGGTTCCGACCCTCTTGTGGTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

354

Amino Acids

39.8

Weight (kDa)

4.82

Isoelectric Point (pI)

59.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	116 - 165	2e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27950 AT5G53290
fragaria_vesca	FvH4_7g30930
malus_domestica	MD01G1214500.v1.1 MD07G1284200.v1.1
prunus_persica	Prupe.2G306400_v2.0.a1
pyrus_communis	pycom01g22510 pycom07g25810
rosa_chinensis	RchiOBHm_Chr1g0380021
rosa_laevigata	RLG00000026340
rosa_multiflora	Rmu_sc0004184.1_g000009
rosa_roxburghii	Rroxscaffold_4G00279790
rosa_rugosa	Rorug01G0416600
rosa_samantha	Rh1AG441100 Rh1BG396800 Rh1CG410000 Rh1DG427600
rosa_wichuraiana	Rw1G038360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	415, 599, 992
AccII	CGCG	5 cut(s)	112, 320, 354, 492, 902
AccIII	TCCGGA	3 cut(s)	142, 850, 916
AclWI	GGATC	2 cut(s)	134, 395
AcoI	YGGCCR	3 cut(s)	275, 305, 387
AcsI	RAATTY	1 cut(s)	707
AcuI	CTGAAG	2 cut(s)	223, 649
AcyI	GRCGYC	5 cut(s)	147, 412, 596, 641, 989
AfaI	GTAC	7 cut(s)	123, 350, 467, 760, 821, 965, 1001
AfiI	CCNNNNNNNGG	6 cut(s)	240, 273, 335, 850, 901, 1051
AflIII	ACRYGT	2 cut(s)	960, 969
AgeI	ACCGGT	2 cut(s)	556, 755
AgsI	TTSAA	2 cut(s)	686, 1022
AhdI	GACNNNNNGTC	1 cut(s)	781
AjiI	CACGTC	1 cut(s)	972
AloI	GAACNNNNNNTCC	2 cut(s)	755, 787
AluBI	AGCT	3 cut(s)	487, 692, 848
AluI	AGCT	3 cut(s)	487, 692, 848
Alw21I	GWGCWC	1 cut(s)	42
Alw26I	GTCTC	5 cut(s)	224, 575, 633, 648, 951
AlwI	GGATC	2 cut(s)	134, 395
Aor13HI	TCCGGA	3 cut(s)	142, 850, 916
AoxI	GGCC	4 cut(s)	275, 305, 387, 892
ApeKI	GCWGC	1 cut(s)	905
ApoI	RAATTY	1 cut(s)	707
ArsI	GACNNNNNNTTYG	2 cut(s)	1016, 1048
AsiGI	ACCGGT	2 cut(s)	556, 755
AspS9I	GGNCC	5 cut(s)	432, 494, 621, 893, 1054
AsuC2I	CCSGG	1 cut(s)	619
AvaII	GGWCC	4 cut(s)	432, 494, 621, 1054
BbsI	GAAGAC	1 cut(s)	747
Bbv12I	GWGCWC	1 cut(s)	42
BbvI	GCAGC	1 cut(s)	917
BccI	CCATC	1 cut(s)	686
BceAI	ACGGC	6 cut(s)	290, 352, 434, 459, 802, 907
BcnI	CCSGG	1 cut(s)	619
BcoDI	GTCTC	5 cut(s)	224, 575, 633, 648, 951
BfaI	CTAG	1 cut(s)	408
Bme1390I	CCNGG	1 cut(s)	619
Bme18I	GGWCC	4 cut(s)	432, 494, 621, 1054
BmeRI	GACNNNNNGTC	1 cut(s)	781
BmgBI	CACGTC	1 cut(s)	972
BmgT120I	GGNCC	5 cut(s)	432, 494, 621, 893, 1054
BmiI	GGNNCC	4 cut(s)	433, 622, 895, 1039
BmrFI	CCNGG	1 cut(s)	619
BmsI	GCATC	2 cut(s)	95, 490
BpiI	GAAGAC	1 cut(s)	747
BpmI	CTGGAG	1 cut(s)	145
BpuMI	CCSGG	1 cut(s)	619
BsaAI	YACGTR	1 cut(s)	963
BsaHI	GRCGYC	5 cut(s)	147, 412, 596, 641, 989
BsaI	GGTCTC	1 cut(s)	224
BsaJI	CCNNGG	9 cut(s)	71, 102, 150, 352, 371, 459, 490, 900, 1003
BsaWI	WCCGGW	5 cut(s)	142, 556, 755, 850, 916
Bsc4I	CCNNNNNNNGG	6 cut(s)	240, 273, 335, 850, 901, 1051
Bse118I	RCCGGY	3 cut(s)	277, 556, 755
Bse1I	ACTGG	1 cut(s)	293
BseAI	TCCGGA	3 cut(s)	142, 850, 916
BseDI	CCNNGG	9 cut(s)	71, 102, 150, 352, 371, 459, 490, 900, 1003
BseGI	GGATG	2 cut(s)	86, 1015
BseLI	CCNNNNNNNGG	6 cut(s)	240, 273, 335, 850, 901, 1051
BseMII	CTCAG	3 cut(s)	48, 276, 555
BseNI	ACTGG	1 cut(s)	293
BseRI	GAGGAG	3 cut(s)	148, 188, 191
BseX3I	CGGCCG	3 cut(s)	275, 305, 387
BseXI	GCAGC	1 cut(s)	917
BseYI	CCCAGC	1 cut(s)	844
Bsh1236I	CGCG	5 cut(s)	112, 320, 354, 492, 902
Bsh1285I	CGRYCG	3 cut(s)	278, 308, 390
BshFI	GGCC	4 cut(s)	277, 307, 389, 894
BshTI	ACCGGT	2 cut(s)	556, 755
BsiEI	CGRYCG	3 cut(s)	278, 308, 390
BsiHKAI	GWGCWC	1 cut(s)	42
BsiSI	CCGG	7 cut(s)	143, 278, 557, 618, 756, 851, 917
BsiWI	CGTACG	2 cut(s)	121, 963
BslFI	GGGAC	2 cut(s)	445, 964
BslI	CCNNNNNNNGG	6 cut(s)	240, 273, 335, 850, 901, 1051
BsmAI	GTCTC	5 cut(s)	224, 575, 633, 648, 951
BsmBI	CGTCTC	1 cut(s)	648
BsmFI	GGGAC	2 cut(s)	445, 964
BsmI	GAATGC	1 cut(s)	833
BsnI	GGCC	4 cut(s)	277, 307, 389, 894
Bso31I	GGTCTC	1 cut(s)	224
Bsp1286I	GDGCHC	1 cut(s)	42
Bsp13I	TCCGGA	3 cut(s)	142, 850, 916
Bsp143I	GATC	2 cut(s)	139, 400
Bsp19I	CCATGG	1 cut(s)	459
BspANI	GGCC	4 cut(s)	277, 307, 389, 894
BspCNI	CTCAG	3 cut(s)	47, 277, 556
BspEI	TCCGGA	3 cut(s)	142, 850, 916
BspFNI	CGCG	5 cut(s)	112, 320, 354, 492, 902
BspLI	GGNNCC	4 cut(s)	433, 622, 895, 1039
BspPI	GGATC	2 cut(s)	134, 395
BspTNI	GGTCTC	1 cut(s)	224
BsrFI	RCCGGY	3 cut(s)	277, 556, 755
BsrI	ACTGG	1 cut(s)	293
BssAI	RCCGGY	3 cut(s)	277, 556, 755
BssECI	CCNNGG	9 cut(s)	71, 102, 150, 352, 371, 459, 490, 900, 1003
BssMI	GATC	2 cut(s)	139, 400
BssNI	GRCGYC	5 cut(s)	147, 412, 596, 641, 989
BssT1I	CCWWGG	3 cut(s)	371, 459, 1003
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	3 cut(s)	165, 531, 918
BstACI	GRCGYC	5 cut(s)	147, 412, 596, 641, 989
BstBAI	YACGTR	1 cut(s)	963
BstC8I	GCNNGC	2 cut(s)	268, 279
BstDEI	CTNAG	3 cut(s)	34, 285, 564
BstDSI	CCRYGG	6 cut(s)	102, 150, 352, 459, 490, 900
BstF5I	GGATG	2 cut(s)	86, 1015
BstFNI	CGCG	5 cut(s)	112, 320, 354, 492, 902
BstKTI	GATC	2 cut(s)	142, 403
BstMAI	GTCTC	5 cut(s)	224, 575, 633, 648, 951
BstMBI	GATC	2 cut(s)	139, 400
BstMCI	CGRYCG	3 cut(s)	278, 308, 390
BstMWI	GCNNNNNNNGC	2 cut(s)	452, 905
BstSCI	CCNGG	1 cut(s)	617
BstUI	CGCG	5 cut(s)	112, 320, 354, 492, 902
BstV1I	GCAGC	1 cut(s)	917
BstV2I	GAAGAC	1 cut(s)	747
BstX2I	RGATCY	1 cut(s)	400
BstYI	RGATCY	1 cut(s)	400
BstZI	CGGCCG	3 cut(s)	275, 305, 387
BsuRI	GGCC	4 cut(s)	277, 307, 389, 894
BtgI	CCRYGG	6 cut(s)	102, 150, 352, 459, 490, 900
BtrI	CACGTC	1 cut(s)	972
BtsCI	GGATG	2 cut(s)	86, 1015
BtsIMutI	CAGTG	2 cut(s)	300, 561
Cac8I	GCNNGC	2 cut(s)	268, 279
Cfr10I	RCCGGY	3 cut(s)	277, 556, 755
Cfr13I	GGNCC	5 cut(s)	432, 494, 621, 893, 1054
Cfr42I	CCGCGG	3 cut(s)	355, 493, 903
CseI	GACGC	3 cut(s)	155, 630, 839
Csp6I	GTAC	7 cut(s)	122, 349, 466, 759, 820, 964, 1000
CspAI	ACCGGT	2 cut(s)	556, 755
CspCI	CAANNNNNGTGG	2 cut(s)	404, 439
CviAII	CATG	1 cut(s)	460
CviQI	GTAC	7 cut(s)	122, 349, 466, 759, 820, 964, 1000
DdeI	CTNAG	3 cut(s)	34, 285, 564
DpnI	GATC	2 cut(s)	141, 402
DpnII	GATC	2 cut(s)	139, 400
DriI	GACNNNNNGTC	1 cut(s)	781
EaeI	YGGCCR	3 cut(s)	275, 305, 387
EagI	CGGCCG	3 cut(s)	275, 305, 387
Eam1104I	CTCTTC	3 cut(s)	165, 531, 918
Eam1105I	GACNNNNNGTC	1 cut(s)	781
EarI	CTCTTC	3 cut(s)	165, 531, 918
EciI	GGCGGA	2 cut(s)	354, 513
EclXI	CGGCCG	3 cut(s)	275, 305, 387
Eco130I	CCWWGG	3 cut(s)	371, 459, 1003
Eco31I	GGTCTC	1 cut(s)	224
Eco32I	GATATC	1 cut(s)	129
Eco47I	GGWCC	4 cut(s)	432, 494, 621, 1054
Eco52I	CGGCCG	3 cut(s)	275, 305, 387
Eco57I	CTGAAG	2 cut(s)	223, 649
EcoO109I	RGGNCCY	1 cut(s)	432
EcoRV	GATATC	1 cut(s)	129
EcoT14I	CCWWGG	3 cut(s)	371, 459, 1003
ErhI	CCWWGG	3 cut(s)	371, 459, 1003
Esp3I	CGTCTC	1 cut(s)	648
FaeI	CATG	1 cut(s)	463
FaiI	YATR	5 cut(s)	461, 787, 929, 984, 998
FaqI	GGGAC	2 cut(s)	445, 964
FatI	CATG	1 cut(s)	459
FauI	CCCGC	2 cut(s)	275, 904
FokI	GGATG	2 cut(s)	73, 1022
FspBI	CTAG	1 cut(s)	408
GsaI	CCCAGC	1 cut(s)	848
GsuI	CTGGAG	1 cut(s)	145
HaeIII	GGCC	4 cut(s)	277, 307, 389, 894
HapII	CCGG	7 cut(s)	143, 278, 557, 618, 756, 851, 917
HgaI	GACGC	3 cut(s)	155, 630, 839
Hin1I	GRCGYC	5 cut(s)	147, 412, 596, 641, 989
Hin1II	CATG	1 cut(s)	463
HincII	GTYRAC	1 cut(s)	416
HindII	GTYRAC	1 cut(s)	416
HpaII	CCGG	7 cut(s)	143, 278, 557, 618, 756, 851, 917
Hpy166II	GTNNAC	2 cut(s)	416, 466
Hpy188I	TCNGA	9 cut(s)	37, 75, 91, 625, 668, 775, 956, 1042, 1061
Hpy188III	TCNNGA	8 cut(s)	143, 229, 241, 497, 809, 851, 917, 1022
Hpy8I	GTNNAC	2 cut(s)	416, 466
HpyAV	CCTTC	4 cut(s)	73, 445, 526, 925
HpyCH4III	ACNGT	1 cut(s)	106
HpyCH4IV	ACGT	5 cut(s)	412, 596, 962, 971, 989
HpyF10VI	GCNNNNNNNGC	2 cut(s)	452, 905
HpyF3I	CTNAG	3 cut(s)	34, 285, 564
HpySE526I	ACGT	5 cut(s)	412, 596, 962, 971, 989
Hsp92I	GRCGYC	5 cut(s)	147, 412, 596, 641, 989
Hsp92II	CATG	1 cut(s)	463
Kpn2I	TCCGGA	3 cut(s)	142, 850, 916
KroI	GCCGGC	1 cut(s)	277
KroNI	GCCGGC	1 cut(s)	279
KspI	CCGCGG	3 cut(s)	355, 493, 903
Kzo9I	GATC	2 cut(s)	139, 400
LmnI	GCTCC	3 cut(s)	492, 526, 853
Lsp1109I	GCAGC	1 cut(s)	917
LweI	GCATC	2 cut(s)	95, 490
MaeI	CTAG	1 cut(s)	408
MaeII	ACGT	5 cut(s)	412, 596, 962, 971, 989
MaeIII	GTNAC	5 cut(s)	106, 133, 559, 608, 794
MalI	GATC	2 cut(s)	141, 402
MboI	GATC	2 cut(s)	139, 400
MboII	GAAGA	7 cut(s)	88, 182, 325, 548, 698, 752, 905
MflI	RGATCY	1 cut(s)	400
MhlI	GDGCHC	1 cut(s)	42
MluCI	AATT	3 cut(s)	393, 511, 707
MlyI	GAGTC	6 cut(s)	14, 101, 149, 635, 735, 863
MmeI	TCCRAC	3 cut(s)	671, 744, 798
MroI	TCCGGA	3 cut(s)	142, 850, 916
MroNI	GCCGGC	1 cut(s)	277
MseI	TTAA	1 cut(s)	483
MspA1I	CMGCKG	4 cut(s)	354, 492, 862, 902
MspI	CCGG	7 cut(s)	143, 278, 557, 618, 756, 851, 917
MspR9I	CCNGG	1 cut(s)	619
Mva1269I	GAATGC	1 cut(s)	833
MvnI	CGCG	5 cut(s)	112, 320, 354, 492, 902
MwoI	GCNNNNNNNGC	2 cut(s)	452, 905
NaeI	GCCGGC	1 cut(s)	279
NciI	CCSGG	1 cut(s)	619
NcoI	CCATGG	1 cut(s)	459
NdeII	GATC	2 cut(s)	139, 400
NgoMIV	GCCGGC	1 cut(s)	277
NlaIII	CATG	1 cut(s)	463
NlaIV	GGNNCC	4 cut(s)	433, 622, 895, 1039
NmuCI	GTSAC	3 cut(s)	106, 133, 559
PcsI	WCGNNNNNNNCGW	3 cut(s)	735, 942, 968
PctI	GAATGC	1 cut(s)	833
PdiI	GCCGGC	1 cut(s)	279
PfeI	GAWTC	5 cut(s)	117, 289, 298, 614, 869
Pfl23II	CGTACG	2 cut(s)	121, 963
PinAI	ACCGGT	2 cut(s)	556, 755
PleI	GAGTC	6 cut(s)	13, 100, 149, 634, 734, 862
PpsI	GAGTC	6 cut(s)	13, 100, 149, 634, 734, 862
Ppu21I	YACGTR	1 cut(s)	963
PpuMI	RGGWCCY	1 cut(s)	432
Psp5II	RGGWCCY	1 cut(s)	432
PspFI	CCCAGC	1 cut(s)	844
PspLI	CGTACG	2 cut(s)	121, 963
PspN4I	GGNNCC	4 cut(s)	433, 622, 895, 1039
PspPI	GGNCC	5 cut(s)	432, 494, 621, 893, 1054
PspPPI	RGGWCCY	1 cut(s)	432
PsuI	RGATCY	1 cut(s)	400
RsaI	GTAC	7 cut(s)	123, 350, 467, 760, 821, 965, 1001
RsaNI	GTAC	7 cut(s)	122, 349, 466, 759, 820, 964, 1000
SacII	CCGCGG	3 cut(s)	355, 493, 903
SaqAI	TTAA	1 cut(s)	483
Sau3AI	GATC	2 cut(s)	139, 400
Sau96I	GGNCC	5 cut(s)	432, 494, 621, 893, 1054
SchI	GAGTC	6 cut(s)	14, 101, 149, 635, 735, 863
ScrFI	CCNGG	1 cut(s)	619
SduI	GDGCHC	1 cut(s)	42
SfaNI	GCATC	2 cut(s)	95, 490
Sfr303I	CCGCGG	3 cut(s)	355, 493, 903
SgrBI	CCGCGG	3 cut(s)	355, 493, 903
SinI	GGWCC	4 cut(s)	432, 494, 621, 1054
Sse9I	AATT	3 cut(s)	393, 511, 707
SspMI	CTAG	1 cut(s)	408
StyD4I	CCNGG	1 cut(s)	617
StyI	CCWWGG	3 cut(s)	371, 459, 1003
TaaI	ACNGT	1 cut(s)	106
TaiI	ACGT	5 cut(s)	415, 599, 965, 974, 992
TaqI	TCGA	8 cut(s)	8, 228, 438, 573, 729, 825, 867, 885
TaqII	GACCGA	2 cut(s)	152, 248
TasI	AATT	3 cut(s)	393, 511, 707
TfiI	GAWTC	5 cut(s)	117, 289, 298, 614, 869
Tru1I	TTAA	1 cut(s)	483
Tru9I	TTAA	1 cut(s)	483
TscAI	CASTG	2 cut(s)	300, 568
TseFI	GTSAC	3 cut(s)	106, 133, 559
TseI	GCWGC	1 cut(s)	905
Tsp45I	GTSAC	3 cut(s)	106, 133, 559
TspDTI	ATGAA	3 cut(s)	80, 326, 944
TspGWI	ACGGA	3 cut(s)	139, 167, 643
TspRI	CASTG	2 cut(s)	300, 568
VpaK11BI	GGWCC	4 cut(s)	432, 494, 621, 1054
XapI	RAATTY	1 cut(s)	707
XspI	CTAG	1 cut(s)	408
ZraI	GACGTC	3 cut(s)	413, 597, 990

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.