Rh1DG427600

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0012779
Physical Location & Seq
Forward (+)
64022009 .. 64023954
1946 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG427600.1

Sequence Viewer

Length: 1092 bp
ATGGAAATGGAGTCTAGTAGTTTCCTTTGCCCCATCAAATACACCCAACACAGAAACACCACCAAGAAATTAACTAAACCTTCCCGGAAAATAGAGCCCGGCACTTCCATCGCCCCAAAAATCATTCGGATATCGATGACCGATCACGACGCCACGGACTCATCCAGCGATGAAGAAGAGACCGAGTACTACTTTGGTCGCCGGAGAGTGAAGAAATATATCAACGAAATCAGCATAGAAACCGACTTGAGAACTAATCCGGCGATCACCAACAATGGCCGGAAAAGGCCTGCCTTAGAGACACGGCCGGCTACGAGGCGGCCAGCACAGAAGAACTCTTGTCCACCGGCCAATGGCGGCGGCAACCGGAAGTTCAGAGGCGTACGACAACGCCCTTGGGGTAAATGGGCGGCCGAGATTAGAGATCCCGGCAAACGTGTAAGACTGTGGTTGGGAACCTTCGACACAGCTGAGGAAGCCGCTATGGTGTACGATAATGCCGCCATTAAACTCCGAGGTCCTGATGCTCAAACGAACTTCTCACCACCGCAAATGGTTGGGACCGTTGCGGACTCGGTTGATGATCAGAATATTGTCAATGAAGTCGAGATTGAGCCGGAAACAACACCAAACGTGACTGTCTCGGTTTCTGGCTATGATTCCGGTGAGGAAACTCATCATCTCTCCTCCCCTACCTCTGTCCTACAGTTCCGAACTCATCCAATCGAAGAGGCCGAGCCACCGCAACTAGAGAAGACAGCACTACTATCAAAACCAACCGAGAAAGTAAATCATGTTCGAGAGTGTGGAGTGGAACATAATCAAATTCCAACGGAGTTGCGGTACATGGAAGAAGACTCGTTCAGGTTCCCAACACCAGAGTCCCCCTTGTTCGAGTCACCGCTCTTCTTCGAGTCGCCCTTCTTCGACGACTCCGCCGCCGTGGCCGGACCGCTCCTGTTTGATGACTTCTGCGACTTGTACGCGTTCGCCGACTCGTCCTTTTCTGCTCAGACGACGTCGTCGATGACGTGTCAGGGAGATGACTGTTTTCAAGACATTTTTGGTTCAGACCCTCTAGTGGTCCTCTGA

Protein Analysis

363

Amino Acids

40.69

Weight (kDa)

5.04

Isoelectric Point (pI)

61.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 124 - 173 8.5e-15 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012779)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27950 AT5G53290
fragaria_vesca FvH4_7g30930
malus_domestica MD01G1214500.v1.1 MD07G1284200.v1.1
prunus_persica Prupe.2G306400_v2.0.a1
pyrus_communis pycom01g22510 pycom07g25810
rosa_chinensis RchiOBHm_Chr1g0380021
rosa_laevigata RLG00000026340
rosa_multiflora Rmu_sc0004184.1_g000009
rosa_roxburghii Rroxscaffold_4G00279790
rosa_rugosa Rorug01G0416600
rosa_samantha Rh1AG441100 Rh1BG396800 Rh1CG410000 Rh1DG427600
rosa_wichuraiana Rw1G038360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1021
AatII GACGTC 1 cut(s) 1022
AccBSI CCGCTC 2 cut(s) 904, 955
AccII CGCG 1 cut(s) 986
AclWI GGATC 1 cut(s) 419
AcoI YGGCCR 6 cut(s) 277, 305, 320, 348, 411, 945
AcsI RAATTY 1 cut(s) 825
AcyI GRCGYC 2 cut(s) 150, 1019
AfaI GTAC 5 cut(s) 188, 384, 491, 845, 983
AfiI CCNNNNNNNGG 2 cut(s) 353, 1081
AflIII ACRYGT 3 cut(s) 436, 984, 1031
AgsI TTSAA 1 cut(s) 1055
AjiI CACGTC 1 cut(s) 1032
AluBI AGCT 1 cut(s) 470
AluI AGCT 1 cut(s) 470
Alw26I GTCTC 3 cut(s) 173, 293, 646
AlwI GGATC 1 cut(s) 419
AoxI GGCC 8 cut(s) 277, 287, 305, 320, 348, 411, 732, 945
ApoI RAATTY 1 cut(s) 825
AspS9I GGNCC 4 cut(s) 518, 561, 950, 1084
AsuC2I CCSGG 3 cut(s) 85, 99, 429
AsuHPI GGTGA 4 cut(s) 259, 534, 677, 891
AvaII GGWCC 4 cut(s) 518, 561, 950, 1084
BanII GRGCYC 1 cut(s) 99
BbsI GAAGAC 2 cut(s) 761, 861
BbvCI CCTCAGC 1 cut(s) 471
BccI CCATC 2 cut(s) 41, 116
BceAI ACGGC 2 cut(s) 320, 926
BcgI CGANNNNNNTGC 2 cut(s) 91, 125
BclI TGATCA 1 cut(s) 583
BcnI CCSGG 3 cut(s) 85, 99, 429
BcoDI GTCTC 3 cut(s) 173, 293, 646
BfaI CTAG 3 cut(s) 15, 749, 1079
BfmI CTRYAG 1 cut(s) 704
BglI GCCNNNNNGGC 1 cut(s) 944
BisI GCNGC 7 cut(s) 320, 358, 361, 411, 480, 501, 939
BlsI GCNGC 7 cut(s) 321, 359, 362, 412, 481, 502, 940
BmcAI AGTACT 1 cut(s) 188
Bme1390I CCNGG 3 cut(s) 85, 99, 429
Bme18I GGWCC 4 cut(s) 518, 561, 950, 1084
BmgBI CACGTC 1 cut(s) 1032
BmgT120I GGNCC 4 cut(s) 518, 561, 950, 1084
BmiI GGNNCC 3 cut(s) 457, 562, 869
BmrFI CCNGG 3 cut(s) 85, 99, 429
BmsI GCATC 1 cut(s) 514
BpiI GAAGAC 2 cut(s) 761, 861
Bpu10I CCTNAGC 1 cut(s) 471
BpuEI CTTGAG 1 cut(s) 268
BpuMI CCSGG 3 cut(s) 85, 99, 429
Bsa29I ATCGAT 1 cut(s) 134
BsaHI GRCGYC 2 cut(s) 150, 1019
BsaI GGTCTC 1 cut(s) 173
BsaJI CCNNGG 4 cut(s) 153, 395, 514, 942
BsaWI WCCGGW 2 cut(s) 366, 662
BsaXI ACNNNNNCTCC 2 cut(s) 827, 857
Bsc4I CCNNNNNNNGG 2 cut(s) 353, 1081
Bse118I RCCGGY 2 cut(s) 307, 346
BseCI ATCGAT 1 cut(s) 134
BseDI CCNNGG 4 cut(s) 153, 395, 514, 942
BseGI GGATG 2 cut(s) 161, 718
BseLI CCNNNNNNNGG 2 cut(s) 353, 1081
BseMII CTCAG 2 cut(s) 462, 1025
BseRI GAGGAG 1 cut(s) 676
BseX3I CGGCCG 2 cut(s) 305, 411
Bsh1236I CGCG 1 cut(s) 986
Bsh1285I CGRYCG 2 cut(s) 308, 414
BshFI GGCC 8 cut(s) 279, 289, 307, 322, 350, 413, 734, 947
BshVI ATCGAT 1 cut(s) 134
BsiEI CGRYCG 2 cut(s) 308, 414
BsiWI CGTACG 1 cut(s) 382
BslFI GGGAC 2 cut(s) 574, 868
BslI CCNNNNNNNGG 2 cut(s) 353, 1081
BsmAI GTCTC 3 cut(s) 173, 293, 646
BsmFI GGGAC 2 cut(s) 574, 868
BsnI GGCC 8 cut(s) 279, 289, 307, 322, 350, 413, 734, 947
Bso31I GGTCTC 1 cut(s) 173
Bsp1286I GDGCHC 1 cut(s) 99
Bsp143I GATC 4 cut(s) 142, 264, 424, 583
BspANI GGCC 8 cut(s) 279, 289, 307, 322, 350, 413, 734, 947
BspCNI CTCAG 2 cut(s) 463, 1024
BspDI ATCGAT 1 cut(s) 134
BspFNI CGCG 1 cut(s) 986
BspLI GGNNCC 3 cut(s) 457, 562, 869
BspPI GGATC 1 cut(s) 419
BspQI GCTCTTC 1 cut(s) 911
BspTNI GGTCTC 1 cut(s) 173
BsrBI CCGCTC 2 cut(s) 904, 955
BsrFI RCCGGY 2 cut(s) 307, 346
BssAI RCCGGY 2 cut(s) 307, 346
BssECI CCNNGG 4 cut(s) 153, 395, 514, 942
BssMI GATC 4 cut(s) 142, 264, 424, 583
BssNI GRCGYC 2 cut(s) 150, 1019
BssT1I CCWWGG 1 cut(s) 395
Bst4CI ACNGT 5 cut(s) 447, 565, 640, 708, 1049
Bst6I CTCTTC 3 cut(s) 171, 723, 911
BstACI GRCGYC 2 cut(s) 150, 1019
BstC8I GCNNGC 3 cut(s) 291, 309, 324
BstDEI CTNAG 3 cut(s) 295, 471, 1011
BstDSI CCRYGG 2 cut(s) 153, 942
BstF5I GGATG 2 cut(s) 161, 718
BstFNI CGCG 1 cut(s) 986
BstKTI GATC 4 cut(s) 145, 267, 427, 586
BstMAI GTCTC 3 cut(s) 173, 293, 646
BstMBI GATC 4 cut(s) 142, 264, 424, 583
BstMCI CGRYCG 2 cut(s) 308, 414
BstMWI GCNNNNNNNGC 2 cut(s) 476, 944
BstSCI CCNGG 3 cut(s) 83, 97, 427
BstSFI CTRYAG 1 cut(s) 704
BstUI CGCG 1 cut(s) 986
BstV2I GAAGAC 2 cut(s) 761, 861
BstX2I RGATCY 1 cut(s) 424
BstYI RGATCY 1 cut(s) 424
BstZI CGGCCG 2 cut(s) 305, 411
Bsu15I ATCGAT 1 cut(s) 134
BsuRI GGCC 8 cut(s) 279, 289, 307, 322, 350, 413, 734, 947
BsuTUI ATCGAT 1 cut(s) 134
BtgI CCRYGG 2 cut(s) 153, 942
BtgZI GCGATG 2 cut(s) 94, 183
BtrI CACGTC 1 cut(s) 1032
BtsCI GGATG 2 cut(s) 161, 718
Cac8I GCNNGC 3 cut(s) 291, 309, 324
Cfr10I RCCGGY 2 cut(s) 307, 346
Cfr13I GGNCC 4 cut(s) 518, 561, 950, 1084
ClaI ATCGAT 1 cut(s) 134
CpoI CGGWCCG 1 cut(s) 950
CseI GACGC 1 cut(s) 158
Csp6I GTAC 5 cut(s) 187, 383, 490, 844, 982
CspI CGGWCCG 1 cut(s) 950
CviAII CATG 2 cut(s) 794, 847
CviQI GTAC 5 cut(s) 187, 383, 490, 844, 982
DdeI CTNAG 3 cut(s) 295, 471, 1011
DpnI GATC 4 cut(s) 144, 266, 426, 585
DpnII GATC 4 cut(s) 142, 264, 424, 583
DrdI GACNNNNNNGTC 1 cut(s) 1021
DseDI GACNNNNNNGTC 1 cut(s) 1021
EaeI YGGCCR 6 cut(s) 277, 305, 320, 348, 411, 945
EagI CGGCCG 2 cut(s) 305, 411
Eam1104I CTCTTC 3 cut(s) 171, 723, 911
EarI CTCTTC 3 cut(s) 171, 723, 911
EciI GGCGGA 1 cut(s) 925
EclXI CGGCCG 2 cut(s) 305, 411
Eco130I CCWWGG 1 cut(s) 395
Eco147I AGGCCT 1 cut(s) 289
Eco24I GRGCYC 1 cut(s) 99
Eco31I GGTCTC 1 cut(s) 173
Eco32I GATATC 1 cut(s) 132
Eco47I GGWCC 4 cut(s) 518, 561, 950, 1084
Eco52I CGGCCG 2 cut(s) 305, 411
EcoO109I RGGNCCY 1 cut(s) 518
EcoRV GATATC 1 cut(s) 132
EcoT14I CCWWGG 1 cut(s) 395
EcoT38I GRGCYC 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 395
FaeI CATG 2 cut(s) 797, 850
FaiI YATR 7 cut(s) 219, 236, 485, 657, 795, 819, 848
FaqI GGGAC 2 cut(s) 574, 868
FatI CATG 2 cut(s) 793, 846
FbaI TGATCA 1 cut(s) 583
Fnu4HI GCNGC 7 cut(s) 320, 358, 361, 411, 480, 501, 939
FokI GGATG 2 cut(s) 148, 705
FriOI GRGCYC 1 cut(s) 99
Fsp4HI GCNGC 7 cut(s) 320, 358, 361, 411, 480, 501, 939
FspBI CTAG 3 cut(s) 15, 749, 1079
GluI GCNGC 7 cut(s) 320, 358, 361, 411, 480, 501, 939
HaeIII GGCC 8 cut(s) 279, 289, 307, 322, 350, 413, 734, 947
HgaI GACGC 1 cut(s) 158
Hin1I GRCGYC 2 cut(s) 150, 1019
Hin1II CATG 2 cut(s) 797, 850
HphI GGTGA 4 cut(s) 259, 534, 677, 891
Hpy166II GTNNAC 2 cut(s) 344, 490
Hpy188I TCNGA 8 cut(s) 129, 377, 515, 588, 713, 1014, 1072, 1091
Hpy188III TCNNGA 5 cut(s) 146, 521, 607, 800, 1055
Hpy8I GTNNAC 2 cut(s) 344, 490
Hpy99I CGWCG 5 cut(s) 152, 932, 1021, 1024, 1027
HpyAV CCTTC 3 cut(s) 90, 469, 931
HpyCH4III ACNGT 5 cut(s) 447, 565, 640, 708, 1049
HpyCH4IV ACGT 4 cut(s) 436, 633, 1019, 1031
HpyF10VI GCNNNNNNNGC 2 cut(s) 476, 944
HpyF3I CTNAG 3 cut(s) 295, 471, 1011
HpySE526I ACGT 4 cut(s) 436, 633, 1019, 1031
Hsp92I GRCGYC 2 cut(s) 150, 1019
Hsp92II CATG 2 cut(s) 797, 850
KroI GCCGGC 1 cut(s) 307
KroNI GCCGGC 1 cut(s) 309
Ksp22I TGATCA 1 cut(s) 583
Kzo9I GATC 4 cut(s) 142, 264, 424, 583
LguI GCTCTTC 1 cut(s) 911
LmnI GCTCC 1 cut(s) 960
LweI GCATC 1 cut(s) 514
MaeI CTAG 3 cut(s) 15, 749, 1079
MaeII ACGT 4 cut(s) 436, 633, 1019, 1031
MaeIII GTNAC 2 cut(s) 634, 897
MalI GATC 4 cut(s) 144, 266, 426, 585
MbiI CCGCTC 2 cut(s) 904, 955
MboI GATC 4 cut(s) 142, 264, 424, 583
MflI RGATCY 1 cut(s) 424
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 2 cut(s) 68, 825
MluI ACGCGT 1 cut(s) 984
MlyI GAGTC 9 cut(s) 20, 152, 566, 851, 890, 905, 923, 926, 989
MmeI TCCRAC 1 cut(s) 854
MnlI CCTC 9 cut(s) 309, 371, 466, 509, 661, 697, 706, 724, 1086
MroNI GCCGGC 1 cut(s) 307
MseI TTAA 2 cut(s) 71, 507
MspA1I CMGCKG 1 cut(s) 470
MspR9I CCNGG 3 cut(s) 85, 99, 429
MvnI CGCG 1 cut(s) 986
MwoI GCNNNNNNNGC 2 cut(s) 476, 944
NaeI GCCGGC 1 cut(s) 309
NciI CCSGG 3 cut(s) 85, 99, 429
NdeII GATC 4 cut(s) 142, 264, 424, 583
NgoMIV GCCGGC 1 cut(s) 307
NlaIII CATG 2 cut(s) 797, 850
NlaIV GGNNCC 3 cut(s) 457, 562, 869
NmeAIII GCCGAG 2 cut(s) 439, 760
NmuCI GTSAC 2 cut(s) 634, 897
PceI AGGCCT 1 cut(s) 289
PciSI GCTCTTC 1 cut(s) 911
PcsI WCGNNNNNNNCGW 4 cut(s) 732, 990, 1022, 1028
PdiI GCCGGC 1 cut(s) 309
PfeI GAWTC 1 cut(s) 659
Pfl23II CGTACG 1 cut(s) 382
PflFI GACNNNGTC 2 cut(s) 1018, 1021
PfoI TCCNGGA 1 cut(s) 83
PkrI GCNGC 7 cut(s) 321, 359, 362, 412, 481, 502, 940
PleI GAGTC 9 cut(s) 19, 152, 566, 851, 889, 904, 922, 926, 989
PpsI GAGTC 9 cut(s) 19, 152, 566, 851, 889, 904, 922, 926, 989
PpuMI RGGWCCY 1 cut(s) 518
Psp5II RGGWCCY 1 cut(s) 518
PspLI CGTACG 1 cut(s) 382
PspN4I GGNNCC 3 cut(s) 457, 562, 869
PspPI GGNCC 4 cut(s) 518, 561, 950, 1084
PspPPI RGGWCCY 1 cut(s) 518
PsrI GAACNNNNNNTAC 2 cut(s) 780, 812
PsuI RGATCY 1 cut(s) 424
PsyI GACNNNGTC 2 cut(s) 1018, 1021
PvuII CAGCTG 1 cut(s) 470
RsaI GTAC 5 cut(s) 188, 384, 491, 845, 983
RsaNI GTAC 5 cut(s) 187, 383, 490, 844, 982
Rsr2I CGGWCCG 1 cut(s) 950
RsrII CGGWCCG 1 cut(s) 950
SapI GCTCTTC 1 cut(s) 911
SaqAI TTAA 2 cut(s) 71, 507
SatI GCNGC 7 cut(s) 320, 358, 361, 411, 480, 501, 939
Sau3AI GATC 4 cut(s) 142, 264, 424, 583
Sau96I GGNCC 4 cut(s) 518, 561, 950, 1084
ScaI AGTACT 1 cut(s) 188
SchI GAGTC 9 cut(s) 20, 152, 566, 851, 890, 905, 923, 926, 989
ScrFI CCNGG 3 cut(s) 85, 99, 429
SduI GDGCHC 1 cut(s) 99
SfaNI GCATC 1 cut(s) 514
SfcI CTRYAG 1 cut(s) 704
SinI GGWCC 4 cut(s) 518, 561, 950, 1084
SmlI CTYRAG 1 cut(s) 247
SmoI CTYRAG 1 cut(s) 247
Sse9I AATT 2 cut(s) 68, 825
SseBI AGGCCT 1 cut(s) 289
SspI AATATT 1 cut(s) 592
SspMI CTAG 3 cut(s) 15, 749, 1079
StuI AGGCCT 1 cut(s) 289
StyD4I CCNGG 3 cut(s) 83, 97, 427
StyI CCWWGG 1 cut(s) 395
TaaI ACNGT 5 cut(s) 447, 565, 640, 708, 1049
TaiI ACGT 4 cut(s) 439, 636, 1022, 1034
TaqI TCGA 9 cut(s) 134, 462, 606, 726, 799, 894, 912, 927, 1025
TaqII GACCGA 2 cut(s) 155, 197
TasI AATT 2 cut(s) 68, 825
TatI WGTACW 1 cut(s) 186
TauI GCSGC 7 cut(s) 322, 360, 363, 413, 482, 503, 941
TfiI GAWTC 1 cut(s) 659
Tru1I TTAA 2 cut(s) 71, 507
Tru9I TTAA 2 cut(s) 71, 507
TseFI GTSAC 2 cut(s) 634, 897
Tsp45I GTSAC 2 cut(s) 634, 897
TspDTI ATGAA 2 cut(s) 186, 615
TspGWI ACGGA 2 cut(s) 170, 848
Tth111I GACNNNGTC 2 cut(s) 1018, 1021
VpaK11BI GGWCC 4 cut(s) 518, 561, 950, 1084
XapI RAATTY 1 cut(s) 825
XspI CTAG 3 cut(s) 15, 749, 1079
ZraI GACGTC 1 cut(s) 1020
ZrmI AGTACT 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.