pycom01g22510

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0012779
Physical Location & Seq
Forward (+)
20083633 .. 20085586
1954 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g22510.1

Sequence Viewer

Length: 1155 bp
ATGTCGATTCTACCCTCCGTTTCTCACCTTATTTACCCACTTGCAGAAAAGAAAAATCCGAGCAGCCCGGAAGAAAGAATGGAGTTTTTGGATGCGGAGTCGAGTATTTTGTGTCCAATCAAATACACGGAGCACAGAAGCAGGACAAAGAAACTGACCAAACCGCGAAAGAAGTCGACATCCGAGTTCAACTCGTCAGTCGTCCCGAGAGTCGTACGAATATCGGTGACCGATCCGGACGCCACGGATTCCTCCAGCGACGAAGGGGAGGAGTGTTTCGGGCGGCAGAGAGTGAAGCACTACATTAACGAAGTCAGCATCGAGACGGACTTCAGGAACAGCCTTGTCATCAAGAACAACGCCCGGAAGCGGCCGGCTGCGGAGGTTCCGGCCAACCGGCGGCCAATGAAGAACGCAGTTTCGCCGACCAACGGCGGAAAGAAGTACCGCGGCGTAAGGCAACGGCCTTGGGGGAAGTGGGCGGCTGAGATTAGAGATCCTGCCAGACGTCAACGCCTGTGGCTGGGGACCTTCGACACGGCGGAGGAAGCCGCCATGGTGTACGATAATGCCGCTATTAAGCTCCGCGGTCCCGACGCTTTGACTAATTTCGTGGCTCCGCCTCCGAAAGAGGAGGAAAAGCCAGAGCCGCTGGTTACCGAGCCTGTCGAGGTGGAGGCTAACGGAACAACGTCGGTTTCCGGTTACGATTCCGGGTCCGAGTCTCACAATCTGGCGTCTCCGACCTCCGTCCTCCATTTCAGAAGCCAACCCAGCATTGAAGAAGTTGACGAGGCTCAAAGATTCCAGATGTTCGACCGAGTCGATGAGTATGAAGACGAAACCGGTACGAACATTTTATCCGACGATTTGTCCGATTTCGGTAACTATTTGCCGCTGGACTTGCCGTACTTCGACGACGCATTCAGTTTCTCCGCTTCGGAGTCGCCGCTGTTCGACTCGCCCCTGTTTTTCAACGACGGCTCCGCCGCAGCACCCGATACTCTTCCGGATTGCTTTATGAAGGACGATTTCAGCGAGTTGTTCCGGGACACGTTCGACGCGTCGCTGTCGCATACGACGTCGTCTCTGTGCCAAGGGGATGACTACTTTCAAGACATTTTGTTCGGTTCCGACCCGCTGGTGGTCCTCTGA

Protein Analysis

385

Amino Acids

43.03

Weight (kDa)

4.78

Isoelectric Point (pI)

54.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 148 - 197 2.2e-15 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012779)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27950 AT5G53290
fragaria_vesca FvH4_7g30930
malus_domestica MD01G1214500.v1.1 MD07G1284200.v1.1
prunus_persica Prupe.2G306400_v2.0.a1
pyrus_communis pycom01g22510 pycom07g25810
rosa_chinensis RchiOBHm_Chr1g0380021
rosa_laevigata RLG00000026340
rosa_multiflora Rmu_sc0004184.1_g000009
rosa_roxburghii Rroxscaffold_4G00279790
rosa_rugosa Rorug01G0416600
rosa_samantha Rh1AG441100 Rh1BG396800 Rh1CG410000 Rh1DG427600
rosa_wichuraiana Rw1G038360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 511, 1085
AccI GTMKAC 1 cut(s) 176
AccII CGCG 4 cut(s) 166, 450, 588, 1064
AccIII TCCGGA 2 cut(s) 235, 1009
AclWI GGATC 2 cut(s) 227, 491
AcoI YGGCCR 3 cut(s) 371, 390, 401
AcuI CTGAAG 1 cut(s) 316
AcyI GRCGYC 4 cut(s) 240, 508, 737, 1082
AfaI GTAC 5 cut(s) 216, 446, 563, 850, 911
AfiI CCNNNNNNNGG 5 cut(s) 369, 399, 431, 523, 1144
AflIII ACRYGT 2 cut(s) 1053, 1062
AgeI ACCGGT 1 cut(s) 845
AgsI TTSAA 4 cut(s) 190, 782, 976, 1115
AhdI GACNNNNNGTC 1 cut(s) 871
AloI GAACNNNNNNTCC 2 cut(s) 845, 877
AluBI AGCT 1 cut(s) 583
AluI AGCT 1 cut(s) 583
Alw21I GWGCWC 1 cut(s) 135
Alw26I GTCTC 4 cut(s) 317, 729, 744, 1092
AlwI GGATC 2 cut(s) 227, 491
Ama87I CYCGRG 1 cut(s) 205
Aor13HI TCCGGA 2 cut(s) 235, 1009
AoxI GGCC 4 cut(s) 371, 390, 401, 464
ApeKI GCWGC 3 cut(s) 63, 377, 992
ArsI GACNNNNNNTTYG 2 cut(s) 1109, 1141
AsiGI ACCGGT 1 cut(s) 845
AspS9I GGNCC 4 cut(s) 528, 590, 717, 1147
AsuC2I CCSGG 4 cut(s) 68, 364, 715, 1049
AsuHPI GGTGA 2 cut(s) 17, 238
AvaI CYCGRG 1 cut(s) 205
AvaII GGWCC 4 cut(s) 528, 590, 717, 1147
BbsI GAAGAC 1 cut(s) 843
Bbv12I GWGCWC 1 cut(s) 135
BbvI GCAGC 3 cut(s) 75, 364, 1004
BceAI ACGGC 5 cut(s) 448, 479, 555, 892, 997
BcnI CCSGG 4 cut(s) 68, 364, 715, 1049
BcoDI GTCTC 4 cut(s) 317, 729, 744, 1092
Bme1390I CCNGG 4 cut(s) 68, 364, 715, 1049
Bme18I GGWCC 4 cut(s) 528, 590, 717, 1147
BmeRI GACNNNNNGTC 1 cut(s) 871
BmeT110I CYCGRG 1 cut(s) 205
BmgT120I GGNCC 4 cut(s) 528, 590, 717, 1147
BmiI GGNNCC 7 cut(s) 387, 529, 592, 618, 718, 985, 1132
BmrFI CCNGG 4 cut(s) 68, 364, 715, 1049
BmsI GCATC 2 cut(s) 82, 327
BoxI GACNNNNGTC 1 cut(s) 749
BpiI GAAGAC 1 cut(s) 843
BplI GAGNNNNNCTC 2 cut(s) 176, 208
BpmI CTGGAG 1 cut(s) 238
BpuMI CCSGG 4 cut(s) 68, 364, 715, 1049
BsaHI GRCGYC 4 cut(s) 240, 508, 737, 1082
BsaJI CCNNGG 6 cut(s) 243, 448, 467, 555, 586, 1096
BsaWI WCCGGW 4 cut(s) 235, 701, 845, 1009
BsaXI ACNNNNNCTCC 2 cut(s) 968, 998
Bsc4I CCNNNNNNNGG 5 cut(s) 369, 399, 431, 523, 1144
Bse118I RCCGGY 3 cut(s) 373, 396, 845
BseAI TCCGGA 2 cut(s) 235, 1009
BseDI CCNNGG 6 cut(s) 243, 448, 467, 555, 586, 1096
BseGI GGATG 3 cut(s) 97, 179, 1108
BseLI CCNNNNNNNGG 5 cut(s) 369, 399, 431, 523, 1144
BseMII CTCAG 1 cut(s) 477
BseRI GAGGAG 2 cut(s) 284, 647
BseX3I CGGCCG 1 cut(s) 371
BseXI GCAGC 3 cut(s) 75, 364, 1004
BseYI CCCAGC 2 cut(s) 523, 773
Bsh1236I CGCG 4 cut(s) 166, 450, 588, 1064
Bsh1285I CGRYCG 2 cut(s) 374, 820
BshFI GGCC 4 cut(s) 373, 392, 403, 466
BshTI ACCGGT 1 cut(s) 845
BsiEI CGRYCG 2 cut(s) 374, 820
BsiHKAI GWGCWC 1 cut(s) 135
BsiHKCI CYCGRG 1 cut(s) 205
BsiWI CGTACG 1 cut(s) 214
BslFI GGGAC 4 cut(s) 188, 541, 576, 1064
BslI CCNNNNNNNGG 5 cut(s) 369, 399, 431, 523, 1144
BsmAI GTCTC 4 cut(s) 317, 729, 744, 1092
BsmBI CGTCTC 3 cut(s) 317, 744, 1092
BsmFI GGGAC 4 cut(s) 188, 541, 576, 1064
BsmI GAATGC 1 cut(s) 923
BsnI GGCC 4 cut(s) 373, 392, 403, 466
BsoBI CYCGRG 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 135
Bsp13I TCCGGA 2 cut(s) 235, 1009
Bsp143I GATC 2 cut(s) 232, 496
Bsp19I CCATGG 1 cut(s) 555
BspANI GGCC 4 cut(s) 373, 392, 403, 466
BspCNI CTCAG 1 cut(s) 478
BspEI TCCGGA 2 cut(s) 235, 1009
BspFNI CGCG 4 cut(s) 166, 450, 588, 1064
BspLI GGNNCC 7 cut(s) 387, 529, 592, 618, 718, 985, 1132
BspPI GGATC 2 cut(s) 227, 491
BsrFI RCCGGY 3 cut(s) 373, 396, 845
BssAI RCCGGY 3 cut(s) 373, 396, 845
BssECI CCNNGG 6 cut(s) 243, 448, 467, 555, 586, 1096
BssMI GATC 2 cut(s) 232, 496
BssNI GRCGYC 4 cut(s) 240, 508, 737, 1082
BssT1I CCWWGG 3 cut(s) 467, 555, 1096
Bst6I CTCTTC 1 cut(s) 1011
BstACI GRCGYC 4 cut(s) 240, 508, 737, 1082
BstC8I GCNNGC 1 cut(s) 375
BstDEI CTNAG 1 cut(s) 486
BstDSI CCRYGG 4 cut(s) 243, 448, 555, 586
BstEII GGTNACC 2 cut(s) 226, 655
BstF5I GGATG 3 cut(s) 97, 179, 1108
BstFNI CGCG 4 cut(s) 166, 450, 588, 1064
BstKTI GATC 2 cut(s) 235, 499
BstMAI GTCTC 4 cut(s) 317, 729, 744, 1092
BstMBI GATC 2 cut(s) 232, 496
BstMCI CGRYCG 2 cut(s) 374, 820
BstMWI GCNNNNNNNGC 4 cut(s) 548, 649, 774, 904
BstPAI GACNNNNGTC 1 cut(s) 749
BstPI GGTNACC 2 cut(s) 226, 655
BstSCI CCNGG 4 cut(s) 66, 362, 713, 1047
BstUI CGCG 4 cut(s) 166, 450, 588, 1064
BstV1I GCAGC 3 cut(s) 75, 364, 1004
BstV2I GAAGAC 1 cut(s) 843
BstX2I RGATCY 1 cut(s) 496
BstYI RGATCY 1 cut(s) 496
BstZI CGGCCG 1 cut(s) 371
BsuRI GGCC 4 cut(s) 373, 392, 403, 466
BtgI CCRYGG 4 cut(s) 243, 448, 555, 586
BtsCI GGATG 3 cut(s) 97, 179, 1108
Cac8I GCNNGC 1 cut(s) 375
Cfr10I RCCGGY 3 cut(s) 373, 396, 845
Cfr13I GGNCC 4 cut(s) 528, 590, 717, 1147
Cfr42I CCGCGG 2 cut(s) 451, 589
CseI GACGC 6 cut(s) 248, 605, 726, 929, 1053, 1070
Csp6I GTAC 5 cut(s) 215, 445, 562, 849, 910
CspAI ACCGGT 1 cut(s) 845
CspCI CAANNNNNGTGG 2 cut(s) 500, 535
CviAII CATG 1 cut(s) 556
CviQI GTAC 5 cut(s) 215, 445, 562, 849, 910
DdeI CTNAG 1 cut(s) 486
DpnI GATC 2 cut(s) 234, 498
DpnII GATC 2 cut(s) 232, 496
DriI GACNNNNNGTC 1 cut(s) 871
EaeI YGGCCR 3 cut(s) 371, 390, 401
EagI CGGCCG 1 cut(s) 371
Eam1104I CTCTTC 1 cut(s) 1011
Eam1105I GACNNNNNGTC 1 cut(s) 871
EarI CTCTTC 1 cut(s) 1011
EciI GGCGGA 4 cut(s) 450, 557, 609, 976
EclXI CGGCCG 1 cut(s) 371
Eco130I CCWWGG 3 cut(s) 467, 555, 1096
Eco47I GGWCC 4 cut(s) 528, 590, 717, 1147
Eco52I CGGCCG 1 cut(s) 371
Eco57I CTGAAG 1 cut(s) 316
Eco88I CYCGRG 1 cut(s) 205
Eco91I GGTNACC 2 cut(s) 226, 655
EcoO109I RGGNCCY 1 cut(s) 528
EcoO65I GGTNACC 2 cut(s) 226, 655
EcoT14I CCWWGG 3 cut(s) 467, 555, 1096
ErhI CCWWGG 3 cut(s) 467, 555, 1096
Esp3I CGTCTC 3 cut(s) 317, 744, 1092
FaeI CATG 1 cut(s) 559
FaiI YATR 4 cut(s) 557, 834, 1022, 1077
FaqI GGGAC 4 cut(s) 188, 541, 576, 1064
FatI CATG 1 cut(s) 555
FauI CCCGC 1 cut(s) 1146
FblI GTMKAC 1 cut(s) 176
FokI GGATG 3 cut(s) 104, 166, 1115
GsaI CCCAGC 2 cut(s) 527, 777
GsuI CTGGAG 1 cut(s) 238
HaeIII GGCC 4 cut(s) 373, 392, 403, 466
HgaI GACGC 6 cut(s) 248, 605, 726, 929, 1053, 1070
Hin1I GRCGYC 4 cut(s) 240, 508, 737, 1082
Hin1II CATG 1 cut(s) 559
HincII GTYRAC 3 cut(s) 177, 512, 790
HindII GTYRAC 3 cut(s) 177, 512, 790
HphI GGTGA 2 cut(s) 17, 238
Hpy166II GTNNAC 4 cut(s) 177, 512, 562, 790
Hpy188III TCNNGA 9 cut(s) 205, 236, 322, 334, 352, 593, 808, 1010, 1115
Hpy8I GTNNAC 4 cut(s) 177, 512, 562, 790
HpyAV CCTTC 3 cut(s) 257, 541, 1018
HpyCH4IV ACGT 4 cut(s) 508, 692, 1055, 1082
HpyCH4V TGCA 1 cut(s) 44
HpyF10VI GCNNNNNNNGC 4 cut(s) 548, 649, 774, 904
HpyF3I CTNAG 1 cut(s) 486
HpySE526I ACGT 4 cut(s) 508, 692, 1055, 1082
Hsp92I GRCGYC 4 cut(s) 240, 508, 737, 1082
Hsp92II CATG 1 cut(s) 559
Kpn2I TCCGGA 2 cut(s) 235, 1009
KroI GCCGGC 1 cut(s) 373
KroNI GCCGGC 1 cut(s) 375
KspI CCGCGG 2 cut(s) 451, 589
Kzo9I GATC 2 cut(s) 232, 496
LmnI GCTCC 4 cut(s) 130, 588, 622, 989
Lsp1109I GCAGC 3 cut(s) 75, 364, 1004
LweI GCATC 2 cut(s) 82, 327
MaeII ACGT 4 cut(s) 508, 692, 1055, 1082
MaeIII GTNAC 4 cut(s) 226, 655, 704, 884
MalI GATC 2 cut(s) 234, 498
MboI GATC 2 cut(s) 232, 496
MboII GAAGA 5 cut(s) 83, 421, 794, 848, 998
MflI RGATCY 1 cut(s) 496
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 1 cut(s) 607
MluI ACGCGT 1 cut(s) 1062
MlyI GAGTC 6 cut(s) 107, 219, 731, 831, 953, 953
MmeI TCCRAC 2 cut(s) 767, 888
MroI TCCGGA 2 cut(s) 235, 1009
MroNI GCCGGC 1 cut(s) 373
MseI TTAA 2 cut(s) 306, 579
MspA1I CMGCKG 6 cut(s) 450, 588, 652, 898, 952, 1141
MspR9I CCNGG 4 cut(s) 68, 364, 715, 1049
Mva1269I GAATGC 1 cut(s) 923
MvnI CGCG 4 cut(s) 166, 450, 588, 1064
MwoI GCNNNNNNNGC 4 cut(s) 548, 649, 774, 904
NaeI GCCGGC 1 cut(s) 375
NciI CCSGG 4 cut(s) 68, 364, 715, 1049
NcoI CCATGG 1 cut(s) 555
NdeII GATC 2 cut(s) 232, 496
NgoMIV GCCGGC 1 cut(s) 373
NlaIII CATG 1 cut(s) 559
NlaIV GGNNCC 7 cut(s) 387, 529, 592, 618, 718, 985, 1132
NmuCI GTSAC 1 cut(s) 226
PcsI WCGNNNNNNNCGW 5 cut(s) 822, 873, 1035, 1061, 1079
PctI GAATGC 1 cut(s) 923
PdiI GCCGGC 1 cut(s) 375
PfeI GAWTC 4 cut(s) 7, 248, 710, 804
Pfl23II CGTACG 1 cut(s) 214
PflFI GACNNNGTC 2 cut(s) 821, 1084
PfoI TCCNGGA 1 cut(s) 1047
PinAI ACCGGT 1 cut(s) 845
PleI GAGTC 6 cut(s) 106, 218, 730, 830, 952, 953
PpsI GAGTC 6 cut(s) 106, 218, 730, 830, 952, 953
PpuMI RGGWCCY 1 cut(s) 528
PshAI GACNNNNGTC 1 cut(s) 749
Psp5II RGGWCCY 1 cut(s) 528
PspEI GGTNACC 2 cut(s) 226, 655
PspFI CCCAGC 2 cut(s) 523, 773
PspLI CGTACG 1 cut(s) 214
PspN4I GGNNCC 7 cut(s) 387, 529, 592, 618, 718, 985, 1132
PspPI GGNCC 4 cut(s) 528, 590, 717, 1147
PspPPI RGGWCCY 1 cut(s) 528
PsuI RGATCY 1 cut(s) 496
PsyI GACNNNGTC 2 cut(s) 821, 1084
RsaI GTAC 5 cut(s) 216, 446, 563, 850, 911
RsaNI GTAC 5 cut(s) 215, 445, 562, 849, 910
SacII CCGCGG 2 cut(s) 451, 589
SalI GTCGAC 1 cut(s) 175
SaqAI TTAA 2 cut(s) 306, 579
Sau3AI GATC 2 cut(s) 232, 496
Sau96I GGNCC 4 cut(s) 528, 590, 717, 1147
SchI GAGTC 6 cut(s) 107, 219, 731, 831, 953, 953
ScrFI CCNGG 4 cut(s) 68, 364, 715, 1049
SduI GDGCHC 1 cut(s) 135
SfaNI GCATC 2 cut(s) 82, 327
Sfr303I CCGCGG 2 cut(s) 451, 589
SgrBI CCGCGG 2 cut(s) 451, 589
SinI GGWCC 4 cut(s) 528, 590, 717, 1147
Sse9I AATT 1 cut(s) 607
StyD4I CCNGG 4 cut(s) 66, 362, 713, 1047
StyI CCWWGG 3 cut(s) 467, 555, 1096
TaiI ACGT 4 cut(s) 511, 695, 1058, 1085
TaqII GACCGA 2 cut(s) 245, 834
TasI AATT 1 cut(s) 607
TfiI GAWTC 4 cut(s) 7, 248, 710, 804
Tru1I TTAA 2 cut(s) 306, 579
Tru9I TTAA 2 cut(s) 306, 579
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 3 cut(s) 63, 377, 992
Tsp45I GTSAC 1 cut(s) 226
TspDTI ATGAA 3 cut(s) 422, 849, 1037
TspGWI ACGGA 6 cut(s) 7, 143, 260, 341, 699, 739
Tth111I GACNNNGTC 2 cut(s) 821, 1084
VpaK11BI GGWCC 4 cut(s) 528, 590, 717, 1147
XmiI GTMKAC 1 cut(s) 176
ZraI GACGTC 2 cut(s) 509, 1083
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.