RchiOBHm_Chr1g0380021

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0012779
Physical Location & Seq
Forward (+)
65822792 .. 65824609
1818 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60332

Sequence Viewer

Length: 1095 bp
ATGGAAATGGAGTCTAGTAGTTTTCTTTGCCCCATCAAATACACCCAACACAGAAACACCACCAAGAAATTAACTAAACCGTCCCGGAAAATAGAGCCCGGCACTTCCATCGCCCCAAAAATCATTCGGATATCGATGACCGATCACGACGCCACGGACTCATCCAGCGATGAAGAAGAGACCGAGTACTACTTTGGTCGCCGGAGAGTGAAGAAATATATCAACGAAATCAGCATAGAAACCGACTTGAGAACTAATCCGGCGATCACCAACAATGGCCGGAAAAGGCCGGCCTTAGAGACACGGCCGGCTACTAGGCGGCCAGCACAGAAGAGCTCTTGTCCACCGGCCAATGGCGGCGGCAACCGGAAGTTCAGAGGCGTACGACAACGTCCTTGGGGTAAATGGGCGGCCGAGATTAGAGATCCCGGCAAACGTGTAAGACTGTGGTTGGGGACCTTCGACACAGCTGAGGAAGCCGCTATGGTGTACGATAATGCCGCCATTAAACTCCGAGGCCCTGATGCTCAAACGAACTTCTCACCACCGCAAATGGTTGGGACCGTTGCGGACAAGGTTGATGATCAGAATATTGTCAATGAAGTGGAGATTGAGCCGGAAACAACACCAAACGTGACCGTCTCGGTTTCTGGCTATGATTCCGGTGAGGAAACTCATCATCTCTCCTCCCCTACCTCCGTCCTACAGTTCCGAACTCATCCAATCGAAGAGGCCGAGCCACCGCAACTAGAGAAGACAGCACTACTCTCAAAACCAACCGAGAAAGTAAATCATGTTCGAGAGTGTGGAGTGGAACACAGTCAAATTCCAGTGGAGTTGCGGTACATGGAAGAAGACGCGTTCAGGTTCCCAACACCAGAGTCCCCCTTGTTCGAGTCACCGCTCTTCTTCGAGTCGCCCTTCTTCGACGACTCCGCCGCCGTGGCCGGACCGCTCCTGTTTGATGACTTCTGCGACTTGTACGCGTTCGCCGACTCGTCCTTTTCTGCTCAGGCGACGTCGTCGATGATGACGTGTCAAGGAGATGACTGTTTTCAAGACATTTTTGGTTCAGACCCTCTAGTGGTCCTCTGA

Protein Analysis

364

Amino Acids

40.77

Weight (kDa)

5.1

Isoelectric Point (pI)

60.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 124 - 173 8.5e-15 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012779)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27950 AT5G53290
fragaria_vesca FvH4_7g30930
malus_domestica MD01G1214500.v1.1 MD07G1284200.v1.1
prunus_persica Prupe.2G306400_v2.0.a1
pyrus_communis pycom01g22510 pycom07g25810
rosa_chinensis RchiOBHm_Chr1g0380021
rosa_laevigata RLG00000026340
rosa_multiflora Rmu_sc0004184.1_g000009
rosa_roxburghii Rroxscaffold_4G00279790
rosa_rugosa Rorug01G0416600
rosa_samantha Rh1AG441100 Rh1BG396800 Rh1CG410000 Rh1DG427600
rosa_wichuraiana Rw1G038360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1022
AccBSI CCGCTC 2 cut(s) 904, 955
AccII CGCG 2 cut(s) 860, 986
AclWI GGATC 1 cut(s) 419
AcoI YGGCCR 6 cut(s) 277, 305, 320, 348, 411, 945
AcsI RAATTY 1 cut(s) 825
AcyI GRCGYC 2 cut(s) 150, 1019
AfaI GTAC 5 cut(s) 188, 384, 491, 845, 983
AfiI CCNNNNNNNGG 2 cut(s) 353, 1084
AflIII ACRYGT 4 cut(s) 436, 858, 984, 1034
AgsI TTSAA 1 cut(s) 1058
AjiI CACGTC 1 cut(s) 1035
AluBI AGCT 2 cut(s) 336, 470
AluI AGCT 2 cut(s) 336, 470
Alw21I GWGCWC 1 cut(s) 338
Alw26I GTCTC 3 cut(s) 173, 293, 646
AlwI GGATC 1 cut(s) 419
ApoI RAATTY 1 cut(s) 825
AspS9I GGNCC 5 cut(s) 456, 518, 561, 950, 1087
AsuC2I CCSGG 3 cut(s) 85, 99, 429
AsuHPI GGTGA 4 cut(s) 259, 534, 677, 891
AvaII GGWCC 4 cut(s) 456, 561, 950, 1087
BanII GRGCYC 2 cut(s) 99, 338
BbsI GAAGAC 2 cut(s) 761, 861
Bbv12I GWGCWC 1 cut(s) 338
BbvCI CCTCAGC 1 cut(s) 471
BccI CCATC 2 cut(s) 41, 116
BceAI ACGGC 2 cut(s) 320, 926
BcgI CGANNNNNNTGC 2 cut(s) 91, 125
BclI TGATCA 1 cut(s) 583
BcnI CCSGG 3 cut(s) 85, 99, 429
BcoDI GTCTC 3 cut(s) 173, 293, 646
BfaI CTAG 4 cut(s) 15, 315, 749, 1082
BfmI CTRYAG 1 cut(s) 704
BglI GCCNNNNNGGC 1 cut(s) 944
BisI GCNGC 7 cut(s) 320, 358, 361, 411, 480, 501, 939
BlsI GCNGC 7 cut(s) 321, 359, 362, 412, 481, 502, 940
BmcAI AGTACT 1 cut(s) 188
Bme1390I CCNGG 3 cut(s) 85, 99, 429
Bme18I GGWCC 4 cut(s) 456, 561, 950, 1087
BmgBI CACGTC 1 cut(s) 1035
BmgT120I GGNCC 5 cut(s) 456, 518, 561, 950, 1087
BmiI GGNNCC 3 cut(s) 457, 562, 869
BmrFI CCNGG 3 cut(s) 85, 99, 429
BmsI GCATC 1 cut(s) 514
BpiI GAAGAC 2 cut(s) 761, 861
Bpu10I CCTNAGC 2 cut(s) 471, 1011
BpuEI CTTGAG 1 cut(s) 268
BpuMI CCSGG 3 cut(s) 85, 99, 429
Bsa29I ATCGAT 1 cut(s) 134
BsaHI GRCGYC 2 cut(s) 150, 1019
BsaI GGTCTC 1 cut(s) 173
BsaJI CCNNGG 4 cut(s) 153, 395, 514, 942
BsaWI WCCGGW 2 cut(s) 366, 662
BsaXI ACNNNNNCTCC 2 cut(s) 827, 857
Bsc4I CCNNNNNNNGG 2 cut(s) 353, 1084
Bse118I RCCGGY 3 cut(s) 289, 307, 346
Bse1I ACTGG 1 cut(s) 830
BseCI ATCGAT 1 cut(s) 134
BseDI CCNNGG 4 cut(s) 153, 395, 514, 942
BseGI GGATG 2 cut(s) 161, 718
BseLI CCNNNNNNNGG 2 cut(s) 353, 1084
BseMII CTCAG 2 cut(s) 462, 1025
BseNI ACTGG 1 cut(s) 830
BseRI GAGGAG 1 cut(s) 676
BseX3I CGGCCG 2 cut(s) 305, 411
Bsh1236I CGCG 2 cut(s) 860, 986
Bsh1285I CGRYCG 2 cut(s) 308, 414
BshVI ATCGAT 1 cut(s) 134
BsiEI CGRYCG 2 cut(s) 308, 414
BsiHKAI GWGCWC 1 cut(s) 338
BsiWI CGTACG 1 cut(s) 382
BslFI GGGAC 4 cut(s) 67, 469, 574, 868
BslI CCNNNNNNNGG 2 cut(s) 353, 1084
BsmAI GTCTC 3 cut(s) 173, 293, 646
BsmBI CGTCTC 1 cut(s) 646
BsmFI GGGAC 4 cut(s) 67, 469, 574, 868
Bso31I GGTCTC 1 cut(s) 173
Bsp1286I GDGCHC 2 cut(s) 99, 338
Bsp143I GATC 4 cut(s) 142, 264, 424, 583
BspCNI CTCAG 2 cut(s) 463, 1024
BspDI ATCGAT 1 cut(s) 134
BspFNI CGCG 2 cut(s) 860, 986
BspLI GGNNCC 3 cut(s) 457, 562, 869
BspPI GGATC 1 cut(s) 419
BspQI GCTCTTC 2 cut(s) 326, 911
BspTNI GGTCTC 1 cut(s) 173
BsrBI CCGCTC 2 cut(s) 904, 955
BsrFI RCCGGY 3 cut(s) 289, 307, 346
BsrI ACTGG 1 cut(s) 830
BssAI RCCGGY 3 cut(s) 289, 307, 346
BssECI CCNNGG 4 cut(s) 153, 395, 514, 942
BssMI GATC 4 cut(s) 142, 264, 424, 583
BssNI GRCGYC 2 cut(s) 150, 1019
BssT1I CCWWGG 1 cut(s) 395
Bst4CI ACNGT 7 cut(s) 81, 447, 565, 640, 708, 821, 1052
Bst6I CTCTTC 4 cut(s) 171, 326, 723, 911
BstACI GRCGYC 2 cut(s) 150, 1019
BstC8I GCNNGC 3 cut(s) 291, 309, 324
BstDEI CTNAG 3 cut(s) 295, 471, 1011
BstDSI CCRYGG 2 cut(s) 153, 942
BstF5I GGATG 2 cut(s) 161, 718
BstFNI CGCG 2 cut(s) 860, 986
BstKTI GATC 4 cut(s) 145, 267, 427, 586
BstMAI GTCTC 3 cut(s) 173, 293, 646
BstMBI GATC 4 cut(s) 142, 264, 424, 583
BstMCI CGRYCG 2 cut(s) 308, 414
BstMWI GCNNNNNNNGC 2 cut(s) 476, 944
BstSCI CCNGG 3 cut(s) 83, 97, 427
BstSFI CTRYAG 1 cut(s) 704
BstUI CGCG 2 cut(s) 860, 986
BstV2I GAAGAC 2 cut(s) 761, 861
BstX2I RGATCY 1 cut(s) 424
BstYI RGATCY 1 cut(s) 424
BstZI CGGCCG 2 cut(s) 305, 411
Bsu15I ATCGAT 1 cut(s) 134
BsuTUI ATCGAT 1 cut(s) 134
BtgI CCRYGG 2 cut(s) 153, 942
BtgZI GCGATG 2 cut(s) 94, 183
BtrI CACGTC 1 cut(s) 1035
BtsCI GGATG 2 cut(s) 161, 718
BtsIMutI CAGTG 1 cut(s) 837
Cac8I GCNNGC 3 cut(s) 291, 309, 324
Cfr10I RCCGGY 3 cut(s) 289, 307, 346
Cfr13I GGNCC 5 cut(s) 456, 518, 561, 950, 1087
ClaI ATCGAT 1 cut(s) 134
CpoI CGGWCCG 1 cut(s) 950
CseI GACGC 2 cut(s) 158, 866
Csp6I GTAC 5 cut(s) 187, 383, 490, 844, 982
CspI CGGWCCG 1 cut(s) 950
CviAII CATG 2 cut(s) 794, 847
CviQI GTAC 5 cut(s) 187, 383, 490, 844, 982
DdeI CTNAG 3 cut(s) 295, 471, 1011
DpnI GATC 4 cut(s) 144, 266, 426, 585
DpnII GATC 4 cut(s) 142, 264, 424, 583
EaeI YGGCCR 6 cut(s) 277, 305, 320, 348, 411, 945
EagI CGGCCG 2 cut(s) 305, 411
Eam1104I CTCTTC 4 cut(s) 171, 326, 723, 911
EarI CTCTTC 4 cut(s) 171, 326, 723, 911
EciI GGCGGA 1 cut(s) 925
Ecl136II GAGCTC 1 cut(s) 336
EclXI CGGCCG 2 cut(s) 305, 411
Eco130I CCWWGG 1 cut(s) 395
Eco24I GRGCYC 2 cut(s) 99, 338
Eco31I GGTCTC 1 cut(s) 173
Eco32I GATATC 1 cut(s) 132
Eco47I GGWCC 4 cut(s) 456, 561, 950, 1087
Eco52I CGGCCG 2 cut(s) 305, 411
Eco53kI GAGCTC 1 cut(s) 336
EcoICRI GAGCTC 1 cut(s) 336
EcoO109I RGGNCCY 2 cut(s) 456, 518
EcoRV GATATC 1 cut(s) 132
EcoT14I CCWWGG 1 cut(s) 395
EcoT38I GRGCYC 2 cut(s) 99, 338
ErhI CCWWGG 1 cut(s) 395
Esp3I CGTCTC 1 cut(s) 646
FaeI CATG 2 cut(s) 797, 850
FaiI YATR 6 cut(s) 219, 236, 485, 657, 795, 848
FaqI GGGAC 4 cut(s) 67, 469, 574, 868
FatI CATG 2 cut(s) 793, 846
FbaI TGATCA 1 cut(s) 583
Fnu4HI GCNGC 7 cut(s) 320, 358, 361, 411, 480, 501, 939
FokI GGATG 2 cut(s) 148, 705
FriOI GRGCYC 2 cut(s) 99, 338
FseI GGCCGGCC 1 cut(s) 293
Fsp4HI GCNGC 7 cut(s) 320, 358, 361, 411, 480, 501, 939
FspBI CTAG 4 cut(s) 15, 315, 749, 1082
GluI GCNGC 7 cut(s) 320, 358, 361, 411, 480, 501, 939
HgaI GACGC 2 cut(s) 158, 866
Hin1I GRCGYC 2 cut(s) 150, 1019
Hin1II CATG 2 cut(s) 797, 850
HinfI GANTC 8 cut(s) 11, 158, 659, 881, 896, 914, 932, 995
HphI GGTGA 4 cut(s) 259, 534, 677, 891
Hpy166II GTNNAC 2 cut(s) 344, 490
Hpy188I TCNGA 7 cut(s) 129, 377, 515, 588, 713, 1075, 1094
Hpy188III TCNNGA 3 cut(s) 146, 800, 1058
Hpy8I GTNNAC 2 cut(s) 344, 490
Hpy99I CGWCG 5 cut(s) 152, 932, 1021, 1024, 1027
HpyAV CCTTC 2 cut(s) 469, 931
HpyCH4III ACNGT 7 cut(s) 81, 447, 565, 640, 708, 821, 1052
HpyCH4IV ACGT 5 cut(s) 391, 436, 633, 1019, 1034
HpyF10VI GCNNNNNNNGC 2 cut(s) 476, 944
HpyF3I CTNAG 3 cut(s) 295, 471, 1011
HpySE526I ACGT 5 cut(s) 391, 436, 633, 1019, 1034
Hsp92I GRCGYC 2 cut(s) 150, 1019
Hsp92II CATG 2 cut(s) 797, 850
KroI GCCGGC 2 cut(s) 289, 307
KroNI GCCGGC 2 cut(s) 291, 309
Ksp22I TGATCA 1 cut(s) 583
Kzo9I GATC 4 cut(s) 142, 264, 424, 583
LguI GCTCTTC 2 cut(s) 326, 911
LmnI GCTCC 1 cut(s) 960
LweI GCATC 1 cut(s) 514
MaeI CTAG 4 cut(s) 15, 315, 749, 1082
MaeII ACGT 5 cut(s) 391, 436, 633, 1019, 1034
MaeIII GTNAC 2 cut(s) 634, 897
MalI GATC 4 cut(s) 144, 266, 426, 585
MbiI CCGCTC 2 cut(s) 904, 955
MboI GATC 4 cut(s) 142, 264, 424, 583
MflI RGATCY 1 cut(s) 424
MhlI GDGCHC 2 cut(s) 99, 338
MluCI AATT 2 cut(s) 68, 825
MluI ACGCGT 2 cut(s) 858, 984
MlyI GAGTC 7 cut(s) 20, 152, 890, 905, 923, 926, 989
MnlI CCTC 8 cut(s) 371, 466, 509, 661, 697, 706, 724, 1089
MroNI GCCGGC 2 cut(s) 289, 307
MseI TTAA 2 cut(s) 71, 507
MspA1I CMGCKG 1 cut(s) 470
MspR9I CCNGG 3 cut(s) 85, 99, 429
MvnI CGCG 2 cut(s) 860, 986
MwoI GCNNNNNNNGC 2 cut(s) 476, 944
NaeI GCCGGC 2 cut(s) 291, 309
NciI CCSGG 3 cut(s) 85, 99, 429
NdeII GATC 4 cut(s) 142, 264, 424, 583
NgoMIV GCCGGC 2 cut(s) 289, 307
NlaIII CATG 2 cut(s) 797, 850
NlaIV GGNNCC 3 cut(s) 457, 562, 869
NmeAIII GCCGAG 2 cut(s) 439, 760
NmuCI GTSAC 2 cut(s) 634, 897
PciSI GCTCTTC 2 cut(s) 326, 911
PcsI WCGNNNNNNNCGW 3 cut(s) 732, 990, 1031
PdiI GCCGGC 2 cut(s) 291, 309
PfeI GAWTC 1 cut(s) 659
Pfl23II CGTACG 1 cut(s) 382
PflFI GACNNNGTC 2 cut(s) 390, 1021
PfoI TCCNGGA 1 cut(s) 83
PkrI GCNGC 7 cut(s) 321, 359, 362, 412, 481, 502, 940
PleI GAGTC 7 cut(s) 19, 152, 889, 904, 922, 926, 989
PpsI GAGTC 7 cut(s) 19, 152, 889, 904, 922, 926, 989
PpuMI RGGWCCY 1 cut(s) 456
Psp124BI GAGCTC 1 cut(s) 338
Psp5II RGGWCCY 1 cut(s) 456
PspLI CGTACG 1 cut(s) 382
PspN4I GGNNCC 3 cut(s) 457, 562, 869
PspPI GGNCC 5 cut(s) 456, 518, 561, 950, 1087
PspPPI RGGWCCY 1 cut(s) 456
PsrI GAACNNNNNNTAC 2 cut(s) 780, 812
PsuI RGATCY 1 cut(s) 424
PsyI GACNNNGTC 2 cut(s) 390, 1021
PvuII CAGCTG 1 cut(s) 470
RigI GGCCGGCC 1 cut(s) 293
RsaI GTAC 5 cut(s) 188, 384, 491, 845, 983
RsaNI GTAC 5 cut(s) 187, 383, 490, 844, 982
Rsr2I CGGWCCG 1 cut(s) 950
RsrII CGGWCCG 1 cut(s) 950
SacI GAGCTC 1 cut(s) 338
SapI GCTCTTC 2 cut(s) 326, 911
SaqAI TTAA 2 cut(s) 71, 507
SatI GCNGC 7 cut(s) 320, 358, 361, 411, 480, 501, 939
Sau3AI GATC 4 cut(s) 142, 264, 424, 583
Sau96I GGNCC 5 cut(s) 456, 518, 561, 950, 1087
ScaI AGTACT 1 cut(s) 188
SchI GAGTC 7 cut(s) 20, 152, 890, 905, 923, 926, 989
ScrFI CCNGG 3 cut(s) 85, 99, 429
SduI GDGCHC 2 cut(s) 99, 338
SfaNI GCATC 1 cut(s) 514
SfcI CTRYAG 1 cut(s) 704
SinI GGWCC 4 cut(s) 456, 561, 950, 1087
SmlI CTYRAG 1 cut(s) 247
SmoI CTYRAG 1 cut(s) 247
Sse9I AATT 2 cut(s) 68, 825
SspI AATATT 1 cut(s) 592
SspMI CTAG 4 cut(s) 15, 315, 749, 1082
SstI GAGCTC 1 cut(s) 338
StyD4I CCNGG 3 cut(s) 83, 97, 427
StyI CCWWGG 1 cut(s) 395
TaaI ACNGT 7 cut(s) 81, 447, 565, 640, 708, 821, 1052
TaiI ACGT 5 cut(s) 394, 439, 636, 1022, 1037
TaqI TCGA 8 cut(s) 134, 462, 726, 799, 894, 912, 927, 1025
TaqII GACCGA 2 cut(s) 155, 197
TasI AATT 2 cut(s) 68, 825
TatI WGTACW 1 cut(s) 186
TauI GCSGC 7 cut(s) 322, 360, 363, 413, 482, 503, 941
TfiI GAWTC 1 cut(s) 659
Tru1I TTAA 2 cut(s) 71, 507
Tru9I TTAA 2 cut(s) 71, 507
TscAI CASTG 1 cut(s) 837
TseFI GTSAC 2 cut(s) 634, 897
Tsp45I GTSAC 2 cut(s) 634, 897
TspDTI ATGAA 2 cut(s) 186, 615
TspGWI ACGGA 2 cut(s) 170, 688
TspRI CASTG 1 cut(s) 837
Tth111I GACNNNGTC 2 cut(s) 390, 1021
VpaK11BI GGWCC 4 cut(s) 456, 561, 950, 1087
XapI RAATTY 1 cut(s) 825
XspI CTAG 4 cut(s) 15, 315, 749, 1082
ZraI GACGTC 1 cut(s) 1020
ZrmI AGTACT 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.