Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004184.1

Orthogroup ID

OG0012779

Physical Location & Seq

Genomic Coordinates Reverse (-)

37569 .. 38949

Gene Structure 1381 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004184.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1326 bp

atggaaatggagtctagtagttttctttgccccatcaaatacacccaacacagaaacaccaccaagaaattaactaaaccttcccggaaaatagagcccggcacttccatcgccccaaaaatcattcggatatctatgaccgatcacgacgccacggactcatccagcgatgaagaagagaccgagtactactttggtcgccggagagtgaagaaatatatcaacgaaatcagcatagaaaccgacttgagaactaatccggcgatcaccaacaatggccggaaaaggccggccttagagacacggccggctactaggcggccagcacagaagaactcttgtccaccggccaatggcggcggcaaccggaagttcagaggcgtacgacaacgtccttggggtaaatgggcggccgagattagagatcccggcaaacgtgtaagactgtggttggggaccttcgacacagctgaggaagccgctatggtgtacgataatgccgccatcaaactccgaggccctgatgctcaaacgaacttctcaccaccgcaaatggttgggaccgttgcggacaaggttgatgatcagaatattgtcaatgaagtcgagattgagccggaaacaacaccaaacgtgactgtctcggtttctggctatgattccggtgaggaaactcatcatctctcctcccctacctctgtcctacagttccgaactcatccaatcgaagaggccgagccagaactagagaagacagcactactatcaaaaccaaccgagaaagtaaatcatgttcgagagtgtggagtggaacacaatcaaattccaacggagttgcgtcaccgctcggaaacaacaccaaacgtgactgtctcggtttctggctatgattccggtgaggaaactcatcatctctcctcccctacctccgtcctacagttccaaactcatccaatcgaagaggccgagccaccgcaactagagaagacagcactaccatcaaaaccaaccgagaaagtaaatcatgttcgagactgtggagtggaacataatcaaattccaatggagttgcggtacatggaagaagacgcgttcaggttcccaacaccagagtcccccttgttcgagtcaccgcacttcttcgagtcgcccttcttcgacgactccgccgccgtggccggaccgctcctgtttgatgacttctgcgacttgtacgcgttcgccgactcgtccttttctgctcaggcgacgtcgtcgatgatgacgtgtcaaggagatgactgttttcaagacatttttggttcagaccctctagtggtcctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

441

Amino Acids

49.43

Weight (kDa)

5.16

Isoelectric Point (pI)

59.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27950 AT5G53290
fragaria_vesca	FvH4_7g30930
malus_domestica	MD01G1214500.v1.1 MD07G1284200.v1.1
prunus_persica	Prupe.2G306400_v2.0.a1
pyrus_communis	pycom01g22510 pycom07g25810
rosa_chinensis	RchiOBHm_Chr1g0380021
rosa_laevigata	RLG00000026340
rosa_multiflora	Rmu_sc0004184.1_g000009
rosa_roxburghii	Rroxscaffold_4G00279790
rosa_rugosa	Rorug01G0416600
rosa_samantha	Rh1AG441100 Rh1BG396800 Rh1CG410000 Rh1DG427600
rosa_wichuraiana	Rw1G038360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1253
AccBSI	CCGCTC	2 cut(s)	846, 1186
AccII	CGCG	2 cut(s)	1091, 1217
AclWI	GGATC	1 cut(s)	419
AcoI	YGGCCR	6 cut(s)	277, 305, 320, 348, 411, 1176
AcsI	RAATTY	2 cut(s)	822, 1056
AcyI	GRCGYC	2 cut(s)	150, 1250
AfaI	GTAC	5 cut(s)	188, 384, 491, 1076, 1214
AfiI	CCNNNNNNNGG	2 cut(s)	353, 1315
AflIII	ACRYGT	4 cut(s)	436, 1089, 1215, 1265
AgsI	TTSAA	1 cut(s)	1289
AjiI	CACGTC	1 cut(s)	1266
AluBI	AGCT	1 cut(s)	470
AluI	AGCT	1 cut(s)	470
Alw26I	GTCTC	5 cut(s)	173, 293, 646, 877, 1026
AlwI	GGATC	1 cut(s)	419
ApoI	RAATTY	2 cut(s)	822, 1056
AspS9I	GGNCC	5 cut(s)	456, 518, 561, 1181, 1318
AsuC2I	CCSGG	3 cut(s)	85, 99, 429
AsuHPI	GGTGA	6 cut(s)	259, 534, 677, 833, 908, 1122
AvaII	GGWCC	4 cut(s)	456, 561, 1181, 1318
BanII	GRGCYC	1 cut(s)	99
BbsI	GAAGAC	3 cut(s)	758, 992, 1092
BbvCI	CCTCAGC	1 cut(s)	471
BccI	CCATC	4 cut(s)	41, 116, 512, 1006
BceAI	ACGGC	2 cut(s)	320, 1157
BcgI	CGANNNNNNTGC	2 cut(s)	91, 125
BclI	TGATCA	1 cut(s)	583
BcnI	CCSGG	3 cut(s)	85, 99, 429
BcoDI	GTCTC	5 cut(s)	173, 293, 646, 877, 1026
BfaI	CTAG	5 cut(s)	15, 315, 746, 980, 1313
BfmI	CTRYAG	2 cut(s)	704, 935
BglI	GCCNNNNNGGC	1 cut(s)	1175
BisI	GCNGC	7 cut(s)	320, 358, 361, 411, 480, 501, 1170
BlsI	GCNGC	7 cut(s)	321, 359, 362, 412, 481, 502, 1171
BmcAI	AGTACT	1 cut(s)	188
Bme1390I	CCNGG	3 cut(s)	85, 99, 429
Bme18I	GGWCC	4 cut(s)	456, 561, 1181, 1318
BmgBI	CACGTC	1 cut(s)	1266
BmgT120I	GGNCC	5 cut(s)	456, 518, 561, 1181, 1318
BmiI	GGNNCC	3 cut(s)	457, 562, 1100
BmrFI	CCNGG	3 cut(s)	85, 99, 429
BmsI	GCATC	1 cut(s)	514
BpiI	GAAGAC	3 cut(s)	758, 992, 1092
Bpu10I	CCTNAGC	2 cut(s)	471, 1242
BpuEI	CTTGAG	1 cut(s)	268
BpuMI	CCSGG	3 cut(s)	85, 99, 429
BsaHI	GRCGYC	2 cut(s)	150, 1250
BsaI	GGTCTC	1 cut(s)	173
BsaJI	CCNNGG	4 cut(s)	153, 395, 514, 1173
BsaWI	WCCGGW	3 cut(s)	366, 662, 893
BsaXI	ACNNNNNCTCC	2 cut(s)	1058, 1088
Bsc4I	CCNNNNNNNGG	2 cut(s)	353, 1315
Bse118I	RCCGGY	3 cut(s)	289, 307, 346
BseDI	CCNNGG	4 cut(s)	153, 395, 514, 1173
BseGI	GGATG	3 cut(s)	161, 718, 949
BseLI	CCNNNNNNNGG	2 cut(s)	353, 1315
BseMII	CTCAG	2 cut(s)	462, 1256
BseRI	GAGGAG	2 cut(s)	676, 907
BseX3I	CGGCCG	2 cut(s)	305, 411
Bsh1236I	CGCG	2 cut(s)	1091, 1217
Bsh1285I	CGRYCG	2 cut(s)	308, 414
BsiEI	CGRYCG	2 cut(s)	308, 414
BsiWI	CGTACG	1 cut(s)	382
BslFI	GGGAC	3 cut(s)	469, 574, 1099
BslI	CCNNNNNNNGG	2 cut(s)	353, 1315
BsmAI	GTCTC	5 cut(s)	173, 293, 646, 877, 1026
BsmFI	GGGAC	3 cut(s)	469, 574, 1099
Bso31I	GGTCTC	1 cut(s)	173
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	4 cut(s)	142, 264, 424, 583
BspCNI	CTCAG	2 cut(s)	463, 1255
BspFNI	CGCG	2 cut(s)	1091, 1217
BspLI	GGNNCC	3 cut(s)	457, 562, 1100
BspPI	GGATC	1 cut(s)	419
BspTNI	GGTCTC	1 cut(s)	173
BsrBI	CCGCTC	2 cut(s)	846, 1186
BsrFI	RCCGGY	3 cut(s)	289, 307, 346
BssAI	RCCGGY	3 cut(s)	289, 307, 346
BssECI	CCNNGG	4 cut(s)	153, 395, 514, 1173
BssMI	GATC	4 cut(s)	142, 264, 424, 583
BssNI	GRCGYC	2 cut(s)	150, 1250
BssT1I	CCWWGG	1 cut(s)	395
Bst4CI	ACNGT	8 cut(s)	447, 565, 640, 708, 871, 939, 1037, 1283
Bst6I	CTCTTC	3 cut(s)	171, 723, 954
BstACI	GRCGYC	2 cut(s)	150, 1250
BstC8I	GCNNGC	3 cut(s)	291, 309, 324
BstDEI	CTNAG	3 cut(s)	295, 471, 1242
BstDSI	CCRYGG	2 cut(s)	153, 1173
BstF5I	GGATG	3 cut(s)	161, 718, 949
BstFNI	CGCG	2 cut(s)	1091, 1217
BstKTI	GATC	4 cut(s)	145, 267, 427, 586
BstMAI	GTCTC	5 cut(s)	173, 293, 646, 877, 1026
BstMBI	GATC	4 cut(s)	142, 264, 424, 583
BstMCI	CGRYCG	2 cut(s)	308, 414
BstMWI	GCNNNNNNNGC	2 cut(s)	476, 1175
BstSCI	CCNGG	3 cut(s)	83, 97, 427
BstSFI	CTRYAG	2 cut(s)	704, 935
BstUI	CGCG	2 cut(s)	1091, 1217
BstV2I	GAAGAC	3 cut(s)	758, 992, 1092
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
BstZI	CGGCCG	2 cut(s)	305, 411
BtgI	CCRYGG	2 cut(s)	153, 1173
BtgZI	GCGATG	2 cut(s)	94, 183
BtrI	CACGTC	1 cut(s)	1266
BtsCI	GGATG	3 cut(s)	161, 718, 949
Cac8I	GCNNGC	3 cut(s)	291, 309, 324
Cfr10I	RCCGGY	3 cut(s)	289, 307, 346
Cfr13I	GGNCC	5 cut(s)	456, 518, 561, 1181, 1318
CpoI	CGGWCCG	1 cut(s)	1181
CseI	GACGC	3 cut(s)	158, 827, 1097
Csp6I	GTAC	5 cut(s)	187, 383, 490, 1075, 1213
CspI	CGGWCCG	1 cut(s)	1181
CviAII	CATG	3 cut(s)	791, 1025, 1078
CviQI	GTAC	5 cut(s)	187, 383, 490, 1075, 1213
DdeI	CTNAG	3 cut(s)	295, 471, 1242
DpnI	GATC	4 cut(s)	144, 266, 426, 585
DpnII	GATC	4 cut(s)	142, 264, 424, 583
EaeI	YGGCCR	6 cut(s)	277, 305, 320, 348, 411, 1176
EagI	CGGCCG	2 cut(s)	305, 411
Eam1104I	CTCTTC	3 cut(s)	171, 723, 954
EarI	CTCTTC	3 cut(s)	171, 723, 954
EciI	GGCGGA	1 cut(s)	1156
EclXI	CGGCCG	2 cut(s)	305, 411
Eco130I	CCWWGG	1 cut(s)	395
Eco24I	GRGCYC	1 cut(s)	99
Eco31I	GGTCTC	1 cut(s)	173
Eco32I	GATATC	1 cut(s)	132
Eco47I	GGWCC	4 cut(s)	456, 561, 1181, 1318
Eco52I	CGGCCG	2 cut(s)	305, 411
EcoO109I	RGGNCCY	2 cut(s)	456, 518
EcoRV	GATATC	1 cut(s)	132
EcoT14I	CCWWGG	1 cut(s)	395
EcoT38I	GRGCYC	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	395
FaeI	CATG	3 cut(s)	794, 1028, 1081
FaqI	GGGAC	3 cut(s)	469, 574, 1099
FatI	CATG	3 cut(s)	790, 1024, 1077
FbaI	TGATCA	1 cut(s)	583
Fnu4HI	GCNGC	7 cut(s)	320, 358, 361, 411, 480, 501, 1170
FokI	GGATG	3 cut(s)	148, 705, 936
FriOI	GRGCYC	1 cut(s)	99
FseI	GGCCGGCC	1 cut(s)	293
Fsp4HI	GCNGC	7 cut(s)	320, 358, 361, 411, 480, 501, 1170
FspBI	CTAG	5 cut(s)	15, 315, 746, 980, 1313
GluI	GCNGC	7 cut(s)	320, 358, 361, 411, 480, 501, 1170
HgaI	GACGC	3 cut(s)	158, 827, 1097
Hin1I	GRCGYC	2 cut(s)	150, 1250
Hin1II	CATG	3 cut(s)	794, 1028, 1081
HinfI	GANTC	9 cut(s)	11, 158, 659, 890, 1112, 1127, 1145, 1163, 1226
HphI	GGTGA	6 cut(s)	259, 534, 677, 833, 908, 1122
Hpy166II	GTNNAC	2 cut(s)	344, 490
Hpy188I	TCNGA	8 cut(s)	129, 377, 515, 588, 713, 850, 1306, 1325
Hpy188III	TCNNGA	5 cut(s)	146, 607, 797, 1031, 1289
Hpy8I	GTNNAC	2 cut(s)	344, 490
Hpy99I	CGWCG	5 cut(s)	152, 1163, 1252, 1255, 1258
HpyAV	CCTTC	3 cut(s)	90, 469, 1162
HpyCH4III	ACNGT	8 cut(s)	447, 565, 640, 708, 871, 939, 1037, 1283
HpyCH4IV	ACGT	6 cut(s)	391, 436, 633, 864, 1250, 1265
HpyF10VI	GCNNNNNNNGC	2 cut(s)	476, 1175
HpyF3I	CTNAG	3 cut(s)	295, 471, 1242
HpySE526I	ACGT	6 cut(s)	391, 436, 633, 864, 1250, 1265
Hsp92I	GRCGYC	2 cut(s)	150, 1250
Hsp92II	CATG	3 cut(s)	794, 1028, 1081
KroI	GCCGGC	2 cut(s)	289, 307
KroNI	GCCGGC	2 cut(s)	291, 309
Ksp22I	TGATCA	1 cut(s)	583
Kzo9I	GATC	4 cut(s)	142, 264, 424, 583
LmnI	GCTCC	1 cut(s)	1191
LweI	GCATC	1 cut(s)	514
MaeI	CTAG	5 cut(s)	15, 315, 746, 980, 1313
MaeII	ACGT	6 cut(s)	391, 436, 633, 864, 1250, 1265
MaeIII	GTNAC	4 cut(s)	634, 839, 865, 1128
MalI	GATC	4 cut(s)	144, 266, 426, 585
MbiI	CCGCTC	2 cut(s)	846, 1186
MboI	GATC	4 cut(s)	142, 264, 424, 583
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	1 cut(s)	99
MluCI	AATT	3 cut(s)	68, 822, 1056
MluI	ACGCGT	2 cut(s)	1089, 1215
MlyI	GAGTC	7 cut(s)	20, 152, 1121, 1136, 1154, 1157, 1220
MmeI	TCCRAC	1 cut(s)	851
MroNI	GCCGGC	2 cut(s)	289, 307
MseI	TTAA	1 cut(s)	71
MspA1I	CMGCKG	1 cut(s)	470
MspR9I	CCNGG	3 cut(s)	85, 99, 429
MvnI	CGCG	2 cut(s)	1091, 1217
MwoI	GCNNNNNNNGC	2 cut(s)	476, 1175
NaeI	GCCGGC	2 cut(s)	291, 309
NciI	CCSGG	3 cut(s)	85, 99, 429
NdeII	GATC	4 cut(s)	142, 264, 424, 583
NgoMIV	GCCGGC	2 cut(s)	289, 307
NlaIII	CATG	3 cut(s)	794, 1028, 1081
NlaIV	GGNNCC	3 cut(s)	457, 562, 1100
NmeAIII	GCCGAG	3 cut(s)	439, 760, 991
NmuCI	GTSAC	4 cut(s)	634, 839, 865, 1128
PcsI	WCGNNNNNNNCGW	4 cut(s)	732, 963, 1221, 1262
PdiI	GCCGGC	2 cut(s)	291, 309
PfeI	GAWTC	2 cut(s)	659, 890
Pfl23II	CGTACG	1 cut(s)	382
PflFI	GACNNNGTC	2 cut(s)	390, 1252
PfoI	TCCNGGA	1 cut(s)	83
PkrI	GCNGC	7 cut(s)	321, 359, 362, 412, 481, 502, 1171
PleI	GAGTC	7 cut(s)	19, 152, 1120, 1135, 1153, 1157, 1220
PpsI	GAGTC	7 cut(s)	19, 152, 1120, 1135, 1153, 1157, 1220
PpuMI	RGGWCCY	1 cut(s)	456
Psp5II	RGGWCCY	1 cut(s)	456
PspLI	CGTACG	1 cut(s)	382
PspN4I	GGNNCC	3 cut(s)	457, 562, 1100
PspPI	GGNCC	5 cut(s)	456, 518, 561, 1181, 1318
PspPPI	RGGWCCY	1 cut(s)	456
PsrI	GAACNNNNNNTAC	4 cut(s)	777, 809, 1011, 1043
PsuI	RGATCY	1 cut(s)	424
PsyI	GACNNNGTC	2 cut(s)	390, 1252
PvuII	CAGCTG	1 cut(s)	470
RigI	GGCCGGCC	1 cut(s)	293
RsaI	GTAC	5 cut(s)	188, 384, 491, 1076, 1214
RsaNI	GTAC	5 cut(s)	187, 383, 490, 1075, 1213
Rsr2I	CGGWCCG	1 cut(s)	1181
RsrII	CGGWCCG	1 cut(s)	1181
SaqAI	TTAA	1 cut(s)	71
SatI	GCNGC	7 cut(s)	320, 358, 361, 411, 480, 501, 1170
Sau3AI	GATC	4 cut(s)	142, 264, 424, 583
Sau96I	GGNCC	5 cut(s)	456, 518, 561, 1181, 1318
ScaI	AGTACT	1 cut(s)	188
SchI	GAGTC	7 cut(s)	20, 152, 1121, 1136, 1154, 1157, 1220
ScrFI	CCNGG	3 cut(s)	85, 99, 429
SduI	GDGCHC	1 cut(s)	99
SfaNI	GCATC	1 cut(s)	514
SfcI	CTRYAG	2 cut(s)	704, 935
SinI	GGWCC	4 cut(s)	456, 561, 1181, 1318
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
Sse9I	AATT	3 cut(s)	68, 822, 1056
SspI	AATATT	1 cut(s)	592
SspMI	CTAG	5 cut(s)	15, 315, 746, 980, 1313
StyD4I	CCNGG	3 cut(s)	83, 97, 427
StyI	CCWWGG	1 cut(s)	395
TaaI	ACNGT	8 cut(s)	447, 565, 640, 708, 871, 939, 1037, 1283
TaiI	ACGT	6 cut(s)	394, 439, 636, 867, 1253, 1268
TaqII	GACCGA	2 cut(s)	155, 197
TasI	AATT	3 cut(s)	68, 822, 1056
TatI	WGTACW	1 cut(s)	186
TauI	GCSGC	7 cut(s)	322, 360, 363, 413, 482, 503, 1172
TfiI	GAWTC	2 cut(s)	659, 890
Tru1I	TTAA	1 cut(s)	71
Tru9I	TTAA	1 cut(s)	71
TseFI	GTSAC	4 cut(s)	634, 839, 865, 1128
Tsp45I	GTSAC	4 cut(s)	634, 839, 865, 1128
TspDTI	ATGAA	2 cut(s)	186, 615
TspGWI	ACGGA	3 cut(s)	170, 845, 919
Tth111I	GACNNNGTC	2 cut(s)	390, 1252
VpaK11BI	GGWCC	4 cut(s)	456, 561, 1181, 1318
XapI	RAATTY	2 cut(s)	822, 1056
XspI	CTAG	5 cut(s)	15, 315, 746, 980, 1313
ZraI	GACGTC	1 cut(s)	1251
ZrmI	AGTACT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.