Transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT4G27950 AT5G53290 |
| fragaria_vesca | FvH4_7g30930 |
| malus_domestica | MD01G1214500.v1.1 MD07G1284200.v1.1 |
| prunus_persica | Prupe.2G306400_v2.0.a1 |
| pyrus_communis | pycom01g22510 pycom07g25810 |
| rosa_chinensis | RchiOBHm_Chr1g0380021 |
| rosa_laevigata | RLG00000026340 |
| rosa_multiflora | Rmu_sc0004184.1_g000009 |
| rosa_roxburghii | Rroxscaffold_4G00279790 |
| rosa_rugosa | Rorug01G0416600 |
| rosa_samantha | Rh1AG441100 Rh1BG396800 Rh1CG410000 Rh1DG427600 |
| rosa_wichuraiana | Rw1G038360 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 1024 |
| AatII | GACGTC | 2 cut(s) | 635, 1025 |
| AccI | GTMKAC | 2 cut(s) | 95, 213 |
| AccII | CGCG | 3 cut(s) | 495, 935, 941 |
| AccIII | TCCGGA | 1 cut(s) | 877 |
| AclWI | GGATC | 2 cut(s) | 134, 398 |
| AcoI | YGGCCR | 2 cut(s) | 268, 936 |
| AcsI | RAATTY | 2 cut(s) | 126, 799 |
| AcuI | CTGAAG | 4 cut(s) | 223, 688, 734, 983 |
| AcyI | GRCGYC | 5 cut(s) | 147, 190, 632, 924, 1022 |
| AfaI | GTAC | 4 cut(s) | 363, 420, 796, 848 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 72, 266, 295, 877, 1042 |
| AflIII | ACRYGT | 4 cut(s) | 415, 858, 981, 1002 |
| AgsI | TTSAA | 1 cut(s) | 1058 |
| AjiI | CACGTC | 3 cut(s) | 416, 859, 1005 |
| AjnI | CCWGG | 1 cut(s) | 71 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 845, 877 |
| AluBI | AGCT | 5 cut(s) | 556, 731, 748, 867, 875 |
| AluI | AGCT | 5 cut(s) | 556, 731, 748, 867, 875 |
| Alw21I | GWGCWC | 1 cut(s) | 42 |
| Alw26I | GTCTC | 5 cut(s) | 295, 526, 606, 669, 782 |
| AlwI | GGATC | 2 cut(s) | 134, 398 |
| Ama87I | CYCGRG | 2 cut(s) | 112, 950 |
| Aor13HI | TCCGGA | 1 cut(s) | 877 |
| AoxI | GGCC | 5 cut(s) | 268, 371, 456, 496, 936 |
| ApoI | RAATTY | 2 cut(s) | 126, 799 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 167, 199, 1052, 1084 |
| AspS9I | GGNCC | 4 cut(s) | 253, 279, 435, 497 |
| AsuC2I | CCSGG | 1 cut(s) | 655 |
| AsuHPI | GGTGA | 4 cut(s) | 325, 516, 610, 1005 |
| AsuII | TTCGAA | 2 cut(s) | 124, 441 |
| AvaI | CYCGRG | 2 cut(s) | 112, 950 |
| AvaII | GGWCC | 3 cut(s) | 253, 279, 435 |
| BbsI | GAAGAC | 1 cut(s) | 180 |
| Bbv12I | GWGCWC | 1 cut(s) | 42 |
| BbvCI | CCTCAGC | 1 cut(s) | 450 |
| BccI | CCATC | 1 cut(s) | 116 |
| BceAI | ACGGC | 6 cut(s) | 283, 320, 380, 386, 437, 829 |
| BciT130I | CCWGG | 1 cut(s) | 73 |
| BcnI | CCSGG | 1 cut(s) | 655 |
| BcoDI | GTCTC | 5 cut(s) | 295, 526, 606, 669, 782 |
| BfaI | CTAG | 1 cut(s) | 9 |
| BisI | GCNGC | 9 cut(s) | 271, 390, 459, 480, 496, 740, 933, 936, 939 |
| BlpI | GCTNAGC | 1 cut(s) | 585 |
| BlsI | GCNGC | 9 cut(s) | 272, 391, 460, 481, 497, 741, 934, 937, 940 |
| Bme1390I | CCNGG | 2 cut(s) | 73, 655 |
| Bme18I | GGWCC | 3 cut(s) | 253, 279, 435 |
| BmeT110I | CYCGRG | 2 cut(s) | 112, 950 |
| BmgBI | CACGTC | 3 cut(s) | 416, 859, 1005 |
| BmgT120I | GGNCC | 4 cut(s) | 253, 279, 435, 497 |
| BmiI | GGNNCC | 2 cut(s) | 436, 499 |
| BmrFI | CCNGG | 2 cut(s) | 73, 655 |
| BmsI | GCATC | 1 cut(s) | 759 |
| BpiI | GAAGAC | 1 cut(s) | 180 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 83, 115 |
| BpmI | CTGGAG | 1 cut(s) | 145 |
| Bpu10I | CCTNAGC | 1 cut(s) | 450 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 585 |
| Bpu14I | TTCGAA | 2 cut(s) | 124, 441 |
| BpuEI | CTTGAG | 1 cut(s) | 626 |
| BpuMI | CCSGG | 1 cut(s) | 655 |
| BsaHI | GRCGYC | 5 cut(s) | 147, 190, 632, 924, 1022 |
| BsaI | GGTCTC | 1 cut(s) | 782 |
| BsaJI | CCNNGG | 9 cut(s) | 71, 150, 249, 355, 374, 493, 534, 933, 1036 |
| BsaWI | WCCGGW | 1 cut(s) | 877 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 72, 266, 295, 877, 1042 |
| Bse1I | ACTGG | 1 cut(s) | 162 |
| BseAI | TCCGGA | 1 cut(s) | 877 |
| BseBI | CCWGG | 1 cut(s) | 73 |
| BseDI | CCNNGG | 9 cut(s) | 71, 150, 249, 355, 374, 493, 534, 933, 1036 |
| BseGI | GGATG | 3 cut(s) | 104, 108, 859 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 72, 266, 295, 877, 1042 |
| BseMII | CTCAG | 5 cut(s) | 27, 384, 441, 576, 725 |
| BseNI | ACTGG | 1 cut(s) | 162 |
| BseRI | GAGGAG | 2 cut(s) | 148, 467 |
| BseX3I | CGGCCG | 2 cut(s) | 268, 936 |
| BseYI | CCCAGC | 1 cut(s) | 871 |
| Bsh1236I | CGCG | 3 cut(s) | 495, 935, 941 |
| Bsh1285I | CGRYCG | 2 cut(s) | 271, 939 |
| BshFI | GGCC | 5 cut(s) | 270, 373, 458, 498, 938 |
| BsiEI | CGRYCG | 2 cut(s) | 271, 939 |
| BsiHKAI | GWGCWC | 1 cut(s) | 42 |
| BsiHKCI | CYCGRG | 2 cut(s) | 112, 950 |
| BsiSI | CCGG | 3 cut(s) | 296, 654, 878 |
| BsiWI | CGTACG | 1 cut(s) | 361 |
| BslFI | GGGAC | 1 cut(s) | 448 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 72, 266, 295, 877, 1042 |
| BsmAI | GTCTC | 5 cut(s) | 295, 526, 606, 669, 782 |
| BsmBI | CGTCTC | 2 cut(s) | 295, 526 |
| BsmFI | GGGAC | 1 cut(s) | 448 |
| BsnI | GGCC | 5 cut(s) | 270, 373, 458, 498, 938 |
| Bso31I | GGTCTC | 1 cut(s) | 782 |
| BsoBI | CYCGRG | 2 cut(s) | 112, 950 |
| Bsp119I | TTCGAA | 2 cut(s) | 124, 441 |
| Bsp1286I | GDGCHC | 1 cut(s) | 42 |
| Bsp13I | TCCGGA | 1 cut(s) | 877 |
| Bsp143I | GATC | 3 cut(s) | 139, 403, 615 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 585 |
| BspANI | GGCC | 5 cut(s) | 270, 373, 458, 498, 938 |
| BspCNI | CTCAG | 5 cut(s) | 28, 385, 442, 577, 724 |
| BspEI | TCCGGA | 1 cut(s) | 877 |
| BspFNI | CGCG | 3 cut(s) | 495, 935, 941 |
| BspHI | TCATGA | 1 cut(s) | 733 |
| BspLI | GGNNCC | 2 cut(s) | 436, 499 |
| BspPI | GGATC | 2 cut(s) | 134, 398 |
| BspT104I | TTCGAA | 2 cut(s) | 124, 441 |
| BspTNI | GGTCTC | 1 cut(s) | 782 |
| BsrI | ACTGG | 1 cut(s) | 162 |
| BssECI | CCNNGG | 9 cut(s) | 71, 150, 249, 355, 374, 493, 534, 933, 1036 |
| BssMI | GATC | 3 cut(s) | 139, 403, 615 |
| BssNI | GRCGYC | 5 cut(s) | 147, 190, 632, 924, 1022 |
| BssT1I | CCWWGG | 4 cut(s) | 249, 374, 534, 1036 |
| Bst2UI | CCWGG | 1 cut(s) | 73 |
| Bst4CI | ACNGT | 3 cut(s) | 279, 286, 313 |
| Bst6I | CTCTTC | 2 cut(s) | 106, 537 |
| BstACI | GRCGYC | 5 cut(s) | 147, 190, 632, 924, 1022 |
| BstBI | TTCGAA | 2 cut(s) | 124, 441 |
| BstDEI | CTNAG | 5 cut(s) | 36, 393, 450, 585, 711 |
| BstDSI | CCRYGG | 4 cut(s) | 150, 355, 493, 933 |
| BstF5I | GGATG | 3 cut(s) | 104, 108, 859 |
| BstFNI | CGCG | 3 cut(s) | 495, 935, 941 |
| BstKTI | GATC | 3 cut(s) | 142, 406, 618 |
| BstMAI | GTCTC | 5 cut(s) | 295, 526, 606, 669, 782 |
| BstMBI | GATC | 3 cut(s) | 139, 403, 615 |
| BstMCI | CGRYCG | 2 cut(s) | 271, 939 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 455, 745, 932, 938 |
| BstNI | CCWGG | 1 cut(s) | 73 |
| BstNSI | RCATGY | 1 cut(s) | 985 |
| BstSCI | CCNGG | 2 cut(s) | 71, 653 |
| BstUI | CGCG | 3 cut(s) | 495, 935, 941 |
| BstV2I | GAAGAC | 1 cut(s) | 180 |
| BstX2I | RGATCY | 1 cut(s) | 403 |
| BstYI | RGATCY | 1 cut(s) | 403 |
| BstZI | CGGCCG | 2 cut(s) | 268, 936 |
| BsuRI | GGCC | 5 cut(s) | 270, 373, 458, 498, 938 |
| BtgI | CCRYGG | 4 cut(s) | 150, 355, 493, 933 |
| BtrI | CACGTC | 3 cut(s) | 416, 859, 1005 |
| BtsCI | GGATG | 3 cut(s) | 104, 108, 859 |
| BtsIMutI | CAGTG | 2 cut(s) | 33, 169 |
| CciI | TCATGA | 1 cut(s) | 733 |
| CciNI | GCGGCCGC | 1 cut(s) | 936 |
| Cfr13I | GGNCC | 4 cut(s) | 253, 279, 435, 497 |
| Cfr42I | CCGCGG | 2 cut(s) | 496, 936 |
| CseI | GACGC | 5 cut(s) | 155, 179, 512, 932, 952 |
| Csp6I | GTAC | 4 cut(s) | 362, 419, 795, 847 |
| CviAII | CATG | 2 cut(s) | 734, 982 |
| CviQI | GTAC | 4 cut(s) | 362, 419, 795, 847 |
| DdeI | CTNAG | 5 cut(s) | 36, 393, 450, 585, 711 |
| DpnI | GATC | 3 cut(s) | 141, 405, 617 |
| DpnII | GATC | 3 cut(s) | 139, 403, 615 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1024 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1024 |
| EaeI | YGGCCR | 2 cut(s) | 268, 936 |
| EagI | CGGCCG | 2 cut(s) | 268, 936 |
| Eam1104I | CTCTTC | 2 cut(s) | 106, 537 |
| EarI | CTCTTC | 2 cut(s) | 106, 537 |
| EciI | GGCGGA | 1 cut(s) | 322 |
| EclXI | CGGCCG | 2 cut(s) | 268, 936 |
| Eco130I | CCWWGG | 4 cut(s) | 249, 374, 534, 1036 |
| Eco31I | GGTCTC | 1 cut(s) | 782 |
| Eco47I | GGWCC | 3 cut(s) | 253, 279, 435 |
| Eco52I | CGGCCG | 2 cut(s) | 268, 936 |
| Eco57I | CTGAAG | 4 cut(s) | 223, 688, 734, 983 |
| Eco88I | CYCGRG | 2 cut(s) | 112, 950 |
| EcoO109I | RGGNCCY | 1 cut(s) | 435 |
| EcoRII | CCWGG | 1 cut(s) | 71 |
| EcoT14I | CCWWGG | 4 cut(s) | 249, 374, 534, 1036 |
| ErhI | CCWWGG | 4 cut(s) | 249, 374, 534, 1036 |
| Esp3I | CGTCTC | 2 cut(s) | 295, 526 |
| FaeI | CATG | 2 cut(s) | 737, 985 |
| FaiI | YATR | 8 cut(s) | 19, 134, 464, 471, 735, 983, 997, 1031 |
| FaqI | GGGAC | 1 cut(s) | 448 |
| FatI | CATG | 2 cut(s) | 733, 981 |
| FauI | CCCGC | 1 cut(s) | 415 |
| FblI | GTMKAC | 2 cut(s) | 95, 213 |
| Fnu4HI | GCNGC | 9 cut(s) | 271, 390, 459, 480, 496, 740, 933, 936, 939 |
| FokI | GGATG | 3 cut(s) | 91, 95, 866 |
| Fsp4HI | GCNGC | 9 cut(s) | 271, 390, 459, 480, 496, 740, 933, 936, 939 |
| FspBI | CTAG | 1 cut(s) | 9 |
| GluI | GCNGC | 9 cut(s) | 271, 390, 459, 480, 496, 740, 933, 936, 939 |
| GsaI | CCCAGC | 1 cut(s) | 875 |
| GsuI | CTGGAG | 1 cut(s) | 145 |
| HaeIII | GGCC | 5 cut(s) | 270, 373, 458, 498, 938 |
| HapII | CCGG | 3 cut(s) | 296, 654, 878 |
| HgaI | GACGC | 5 cut(s) | 155, 179, 512, 932, 952 |
| Hin1I | GRCGYC | 5 cut(s) | 147, 190, 632, 924, 1022 |
| Hin1II | CATG | 2 cut(s) | 737, 985 |
| HincII | GTYRAC | 1 cut(s) | 214 |
| HindII | GTYRAC | 1 cut(s) | 214 |
| HindIII | AAGCTT | 1 cut(s) | 746 |
| HinfI | GANTC | 8 cut(s) | 5, 92, 117, 155, 599, 650, 662, 881 |
| HpaII | CCGG | 3 cut(s) | 296, 654, 878 |
| HphI | GGTGA | 4 cut(s) | 325, 516, 610, 1005 |
| Hpy166II | GTNNAC | 5 cut(s) | 96, 214, 282, 419, 959 |
| Hpy188I | TCNGA | 7 cut(s) | 195, 242, 661, 707, 811, 1078, 1097 |
| Hpy8I | GTNNAC | 5 cut(s) | 96, 214, 282, 419, 959 |
| HpyAV | CCTTC | 3 cut(s) | 448, 574, 958 |
| HpyCH4III | ACNGT | 3 cut(s) | 279, 286, 313 |
| HpyCH4IV | ACGT | 6 cut(s) | 210, 415, 632, 858, 1004, 1022 |
| HpyCH4V | TGCA | 1 cut(s) | 772 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 455, 745, 932, 938 |
| HpyF3I | CTNAG | 5 cut(s) | 36, 393, 450, 585, 711 |
| HpySE526I | ACGT | 6 cut(s) | 210, 415, 632, 858, 1004, 1022 |
| Hsp92I | GRCGYC | 5 cut(s) | 147, 190, 632, 924, 1022 |
| Hsp92II | CATG | 2 cut(s) | 737, 985 |
| Kpn2I | TCCGGA | 1 cut(s) | 877 |
| KspI | CCGCGG | 2 cut(s) | 496, 936 |
| Kzo9I | GATC | 3 cut(s) | 139, 403, 615 |
| LmnI | GCTCC | 2 cut(s) | 342, 880 |
| LweI | GCATC | 1 cut(s) | 759 |
| MaeI | CTAG | 1 cut(s) | 9 |
| MaeII | ACGT | 6 cut(s) | 210, 415, 632, 858, 1004, 1022 |
| MaeIII | GTNAC | 3 cut(s) | 644, 989, 1011 |
| MalI | GATC | 3 cut(s) | 141, 405, 617 |
| MboI | GATC | 3 cut(s) | 139, 403, 615 |
| MflI | RGATCY | 1 cut(s) | 403 |
| MhlI | GDGCHC | 1 cut(s) | 42 |
| MluCI | AATT | 5 cut(s) | 59, 126, 514, 799, 823 |
| MlyI | GAGTC | 4 cut(s) | 101, 149, 608, 671 |
| MmeI | TCCRAC | 1 cut(s) | 639 |
| MroI | TCCGGA | 1 cut(s) | 877 |
| MseI | TTAA | 2 cut(s) | 486, 509 |
| MspA1I | CMGCKG | 2 cut(s) | 495, 935 |
| MspI | CCGG | 3 cut(s) | 296, 654, 878 |
| MspR9I | CCNGG | 2 cut(s) | 73, 655 |
| MvaI | CCWGG | 1 cut(s) | 73 |
| MvnI | CGCG | 3 cut(s) | 495, 935, 941 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 455, 745, 932, 938 |
| NciI | CCSGG | 1 cut(s) | 655 |
| NdeII | GATC | 3 cut(s) | 139, 403, 615 |
| NlaIII | CATG | 2 cut(s) | 737, 985 |
| NlaIV | GGNNCC | 2 cut(s) | 436, 499 |
| NmuCI | GTSAC | 2 cut(s) | 989, 1011 |
| NotI | GCGGCCGC | 1 cut(s) | 936 |
| NspI | RCATGY | 1 cut(s) | 985 |
| NspV | TTCGAA | 2 cut(s) | 124, 441 |
| PagI | TCATGA | 1 cut(s) | 733 |
| PciI | ACATGT | 1 cut(s) | 981 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 810, 1013 |
| PfeI | GAWTC | 3 cut(s) | 117, 650, 881 |
| Pfl23II | CGTACG | 1 cut(s) | 361 |
| PflFI | GACNNNGTC | 2 cut(s) | 1021, 1024 |
| PkrI | GCNGC | 9 cut(s) | 272, 391, 460, 481, 497, 741, 934, 937, 940 |
| PleI | GAGTC | 4 cut(s) | 100, 149, 607, 670 |
| PpsI | GAGTC | 4 cut(s) | 100, 149, 607, 670 |
| PpuMI | RGGWCCY | 1 cut(s) | 435 |
| PscI | ACATGT | 1 cut(s) | 981 |
| Psp5II | RGGWCCY | 1 cut(s) | 435 |
| Psp6I | CCWGG | 1 cut(s) | 71 |
| PspFI | CCCAGC | 1 cut(s) | 871 |
| PspGI | CCWGG | 1 cut(s) | 71 |
| PspLI | CGTACG | 1 cut(s) | 361 |
| PspN4I | GGNNCC | 2 cut(s) | 436, 499 |
| PspPI | GGNCC | 4 cut(s) | 253, 279, 435, 497 |
| PspPPI | RGGWCCY | 1 cut(s) | 435 |
| PsuI | RGATCY | 1 cut(s) | 403 |
| PsyI | GACNNNGTC | 2 cut(s) | 1021, 1024 |
| RsaI | GTAC | 4 cut(s) | 363, 420, 796, 848 |
| RsaNI | GTAC | 4 cut(s) | 362, 419, 795, 847 |
| SacII | CCGCGG | 2 cut(s) | 496, 936 |
| SalI | GTCGAC | 1 cut(s) | 212 |
| SaqAI | TTAA | 2 cut(s) | 486, 509 |
| SatI | GCNGC | 9 cut(s) | 271, 390, 459, 480, 496, 740, 933, 936, 939 |
| Sau3AI | GATC | 3 cut(s) | 139, 403, 615 |
| Sau96I | GGNCC | 4 cut(s) | 253, 279, 435, 497 |
| SchI | GAGTC | 4 cut(s) | 101, 149, 608, 671 |
| ScrFI | CCNGG | 2 cut(s) | 73, 655 |
| SduI | GDGCHC | 1 cut(s) | 42 |
| SfaNI | GCATC | 1 cut(s) | 759 |
| Sfr303I | CCGCGG | 2 cut(s) | 496, 936 |
| SfuI | TTCGAA | 2 cut(s) | 124, 441 |
| SgrBI | CCGCGG | 2 cut(s) | 496, 936 |
| SgrDI | CGTCGACG | 1 cut(s) | 212 |
| SinI | GGWCC | 3 cut(s) | 253, 279, 435 |
| SmlI | CTYRAG | 1 cut(s) | 605 |
| SmoI | CTYRAG | 1 cut(s) | 605 |
| Sse9I | AATT | 5 cut(s) | 59, 126, 514, 799, 823 |
| SspMI | CTAG | 1 cut(s) | 9 |
| StyD4I | CCNGG | 2 cut(s) | 71, 653 |
| StyI | CCWWGG | 4 cut(s) | 249, 374, 534, 1036 |
| TaaI | ACNGT | 3 cut(s) | 279, 286, 313 |
| TaiI | ACGT | 6 cut(s) | 213, 418, 635, 861, 1007, 1025 |
| TaqI | TCGA | 7 cut(s) | 124, 213, 228, 441, 576, 897, 915 |
| TaqII | GACCGA | 1 cut(s) | 152 |
| TasI | AATT | 5 cut(s) | 59, 126, 514, 799, 823 |
| TauI | GCSGC | 9 cut(s) | 273, 392, 461, 482, 498, 742, 935, 938, 941 |
| TfiI | GAWTC | 3 cut(s) | 117, 650, 881 |
| Tru1I | TTAA | 2 cut(s) | 486, 509 |
| Tru9I | TTAA | 2 cut(s) | 486, 509 |
| TscAI | CASTG | 2 cut(s) | 40, 169 |
| TseFI | GTSAC | 2 cut(s) | 989, 1011 |
| Tsp45I | GTSAC | 2 cut(s) | 989, 1011 |
| TspDTI | ATGAA | 1 cut(s) | 93 |
| TspGWI | ACGGA | 4 cut(s) | 167, 313, 344, 639 |
| TspRI | CASTG | 2 cut(s) | 40, 169 |
| Tth111I | GACNNNGTC | 2 cut(s) | 1021, 1024 |
| VpaK11BI | GGWCC | 3 cut(s) | 253, 279, 435 |
| XapI | RAATTY | 2 cut(s) | 126, 799 |
| XceI | RCATGY | 1 cut(s) | 985 |
| XmiI | GTMKAC | 2 cut(s) | 95, 213 |
| XspI | CTAG | 1 cut(s) | 9 |
| ZraI | GACGTC | 2 cut(s) | 633, 1023 |