Prupe.2G306400_v2.0.a1

Transcription factor

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Forward (+)
29170481 .. 29172474
1994 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G306400.1

Sequence Viewer

Length: 1098 bp
ATGGACTCTAGTATTCTATGTCCAATCAAATACACTGAGCACCGAAACACCACAAAAAAATTGACCAAACCCAGGAAGAAACCAACAACAGAGTCTACCTCTTCATCCATCCCGAGAATCGTTCGAATTTCTATGACCGATCCAGACGCCACGGACTCCTCCAGTGGCGAAGAAGACGAGTTTTTTGGGCGTCAGAGAGTGAAGCACTACGTCGACGAAATCATCATCGAAACCGACTTCAGAAACACCTTGGTCCTCCCCAACAACGGCCGCAAACGGTCCACCGTCCAGCCTCCGGCGAGACGGCGGACGGTGAAAAACTCCGTTTCGCAGACCAATGGGAGCAGGAAGTTCCGTGGCGTACGGCAACGGCCTTGGGGCAAATGGGCGGCTGAGATTAGAGATCCCGCCCGACGTGTACGGCTGTGGTTGGGGACCTTCGAAACTGCTGAGGAGGCCGCTATGGTTTATGATAATGCCGCCATTAAACTCCGCGGCCCCGACGCTTTAACTAATTTCGTCTCACCGCTACCCAAGGAAGAAGAGAAGCCAGAGCTTCCCGTTGAGCCTCTCATCGAGAAGGCTGAGCCTGTTATTGAGTCTCTTGAGGTTGAGATCACCAACGGAACGACGTCGGGTTCTGGTTACGATTCCGGGTCGGAGTCTCACAACAATCTGTCATCTCCTACCTCTGTTCTTCACTTCAGAACTCAGCCCAAAATGGAAGAAGCTCATGAGCCGCAAAAGCTTCAGGTATTTGACCAAGTGATGCAGGAGTGTGAAGATGAGACCTGTACGAATTTCGTATCGGACGATTTGGGTAATTATTTGCCTCTGGACTTGCCGTACTTGGATGACGTGTTCAGCTTCCCAGCTCCGGATTCTCCCTTGTTCTTCGATACGCCGATGTTTTTCGACGACGACGCCACCGCCGCGGCCGCGACGCTTCCCGAGTGTTTACTGAAGGAGGATTTCAGCGACATGTTTCGTGACACATACGACACGTCGTTGTCACCGACGACGTCGTCTATGTGCCAAGGAGGGGAGGACTATTTTCAAGACATTTTGTTTGGTTCAGACCCCCTTGTTGTCCTCTGA

Protein Analysis

366

Amino Acids

41.1

Weight (kDa)

4.75

Isoelectric Point (pI)

57.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0012779)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G27950 AT5G53290
fragaria_vesca FvH4_7g30930
malus_domestica MD01G1214500.v1.1 MD07G1284200.v1.1
prunus_persica Prupe.2G306400_v2.0.a1
pyrus_communis pycom01g22510 pycom07g25810
rosa_chinensis RchiOBHm_Chr1g0380021
rosa_laevigata RLG00000026340
rosa_multiflora Rmu_sc0004184.1_g000009
rosa_roxburghii Rroxscaffold_4G00279790
rosa_rugosa Rorug01G0416600
rosa_samantha Rh1AG441100 Rh1BG396800 Rh1CG410000 Rh1DG427600
rosa_wichuraiana Rw1G038360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1024
AatII GACGTC 2 cut(s) 635, 1025
AccI GTMKAC 2 cut(s) 95, 213
AccII CGCG 3 cut(s) 495, 935, 941
AccIII TCCGGA 1 cut(s) 877
AclWI GGATC 2 cut(s) 134, 398
AcoI YGGCCR 2 cut(s) 268, 936
AcsI RAATTY 2 cut(s) 126, 799
AcuI CTGAAG 4 cut(s) 223, 688, 734, 983
AcyI GRCGYC 5 cut(s) 147, 190, 632, 924, 1022
AfaI GTAC 4 cut(s) 363, 420, 796, 848
AfiI CCNNNNNNNGG 5 cut(s) 72, 266, 295, 877, 1042
AflIII ACRYGT 4 cut(s) 415, 858, 981, 1002
AgsI TTSAA 1 cut(s) 1058
AjiI CACGTC 3 cut(s) 416, 859, 1005
AjnI CCWGG 1 cut(s) 71
AloI GAACNNNNNNTCC 2 cut(s) 845, 877
AluBI AGCT 5 cut(s) 556, 731, 748, 867, 875
AluI AGCT 5 cut(s) 556, 731, 748, 867, 875
Alw21I GWGCWC 1 cut(s) 42
Alw26I GTCTC 5 cut(s) 295, 526, 606, 669, 782
AlwI GGATC 2 cut(s) 134, 398
Ama87I CYCGRG 2 cut(s) 112, 950
Aor13HI TCCGGA 1 cut(s) 877
AoxI GGCC 5 cut(s) 268, 371, 456, 496, 936
ApoI RAATTY 2 cut(s) 126, 799
ArsI GACNNNNNNTTYG 4 cut(s) 167, 199, 1052, 1084
AspS9I GGNCC 4 cut(s) 253, 279, 435, 497
AsuC2I CCSGG 1 cut(s) 655
AsuHPI GGTGA 4 cut(s) 325, 516, 610, 1005
AsuII TTCGAA 2 cut(s) 124, 441
AvaI CYCGRG 2 cut(s) 112, 950
AvaII GGWCC 3 cut(s) 253, 279, 435
BbsI GAAGAC 1 cut(s) 180
Bbv12I GWGCWC 1 cut(s) 42
BbvCI CCTCAGC 1 cut(s) 450
BccI CCATC 1 cut(s) 116
BceAI ACGGC 6 cut(s) 283, 320, 380, 386, 437, 829
BciT130I CCWGG 1 cut(s) 73
BcnI CCSGG 1 cut(s) 655
BcoDI GTCTC 5 cut(s) 295, 526, 606, 669, 782
BfaI CTAG 1 cut(s) 9
BisI GCNGC 9 cut(s) 271, 390, 459, 480, 496, 740, 933, 936, 939
BlpI GCTNAGC 1 cut(s) 585
BlsI GCNGC 9 cut(s) 272, 391, 460, 481, 497, 741, 934, 937, 940
Bme1390I CCNGG 2 cut(s) 73, 655
Bme18I GGWCC 3 cut(s) 253, 279, 435
BmeT110I CYCGRG 2 cut(s) 112, 950
BmgBI CACGTC 3 cut(s) 416, 859, 1005
BmgT120I GGNCC 4 cut(s) 253, 279, 435, 497
BmiI GGNNCC 2 cut(s) 436, 499
BmrFI CCNGG 2 cut(s) 73, 655
BmsI GCATC 1 cut(s) 759
BpiI GAAGAC 1 cut(s) 180
BplI GAGNNNNNCTC 2 cut(s) 83, 115
BpmI CTGGAG 1 cut(s) 145
Bpu10I CCTNAGC 1 cut(s) 450
Bpu1102I GCTNAGC 1 cut(s) 585
Bpu14I TTCGAA 2 cut(s) 124, 441
BpuEI CTTGAG 1 cut(s) 626
BpuMI CCSGG 1 cut(s) 655
BsaHI GRCGYC 5 cut(s) 147, 190, 632, 924, 1022
BsaI GGTCTC 1 cut(s) 782
BsaJI CCNNGG 9 cut(s) 71, 150, 249, 355, 374, 493, 534, 933, 1036
BsaWI WCCGGW 1 cut(s) 877
Bsc4I CCNNNNNNNGG 5 cut(s) 72, 266, 295, 877, 1042
Bse1I ACTGG 1 cut(s) 162
BseAI TCCGGA 1 cut(s) 877
BseBI CCWGG 1 cut(s) 73
BseDI CCNNGG 9 cut(s) 71, 150, 249, 355, 374, 493, 534, 933, 1036
BseGI GGATG 3 cut(s) 104, 108, 859
BseLI CCNNNNNNNGG 5 cut(s) 72, 266, 295, 877, 1042
BseMII CTCAG 5 cut(s) 27, 384, 441, 576, 725
BseNI ACTGG 1 cut(s) 162
BseRI GAGGAG 2 cut(s) 148, 467
BseX3I CGGCCG 2 cut(s) 268, 936
BseYI CCCAGC 1 cut(s) 871
Bsh1236I CGCG 3 cut(s) 495, 935, 941
Bsh1285I CGRYCG 2 cut(s) 271, 939
BshFI GGCC 5 cut(s) 270, 373, 458, 498, 938
BsiEI CGRYCG 2 cut(s) 271, 939
BsiHKAI GWGCWC 1 cut(s) 42
BsiHKCI CYCGRG 2 cut(s) 112, 950
BsiSI CCGG 3 cut(s) 296, 654, 878
BsiWI CGTACG 1 cut(s) 361
BslFI GGGAC 1 cut(s) 448
BslI CCNNNNNNNGG 5 cut(s) 72, 266, 295, 877, 1042
BsmAI GTCTC 5 cut(s) 295, 526, 606, 669, 782
BsmBI CGTCTC 2 cut(s) 295, 526
BsmFI GGGAC 1 cut(s) 448
BsnI GGCC 5 cut(s) 270, 373, 458, 498, 938
Bso31I GGTCTC 1 cut(s) 782
BsoBI CYCGRG 2 cut(s) 112, 950
Bsp119I TTCGAA 2 cut(s) 124, 441
Bsp1286I GDGCHC 1 cut(s) 42
Bsp13I TCCGGA 1 cut(s) 877
Bsp143I GATC 3 cut(s) 139, 403, 615
Bsp1720I GCTNAGC 1 cut(s) 585
BspANI GGCC 5 cut(s) 270, 373, 458, 498, 938
BspCNI CTCAG 5 cut(s) 28, 385, 442, 577, 724
BspEI TCCGGA 1 cut(s) 877
BspFNI CGCG 3 cut(s) 495, 935, 941
BspHI TCATGA 1 cut(s) 733
BspLI GGNNCC 2 cut(s) 436, 499
BspPI GGATC 2 cut(s) 134, 398
BspT104I TTCGAA 2 cut(s) 124, 441
BspTNI GGTCTC 1 cut(s) 782
BsrI ACTGG 1 cut(s) 162
BssECI CCNNGG 9 cut(s) 71, 150, 249, 355, 374, 493, 534, 933, 1036
BssMI GATC 3 cut(s) 139, 403, 615
BssNI GRCGYC 5 cut(s) 147, 190, 632, 924, 1022
BssT1I CCWWGG 4 cut(s) 249, 374, 534, 1036
Bst2UI CCWGG 1 cut(s) 73
Bst4CI ACNGT 3 cut(s) 279, 286, 313
Bst6I CTCTTC 2 cut(s) 106, 537
BstACI GRCGYC 5 cut(s) 147, 190, 632, 924, 1022
BstBI TTCGAA 2 cut(s) 124, 441
BstDEI CTNAG 5 cut(s) 36, 393, 450, 585, 711
BstDSI CCRYGG 4 cut(s) 150, 355, 493, 933
BstF5I GGATG 3 cut(s) 104, 108, 859
BstFNI CGCG 3 cut(s) 495, 935, 941
BstKTI GATC 3 cut(s) 142, 406, 618
BstMAI GTCTC 5 cut(s) 295, 526, 606, 669, 782
BstMBI GATC 3 cut(s) 139, 403, 615
BstMCI CGRYCG 2 cut(s) 271, 939
BstMWI GCNNNNNNNGC 4 cut(s) 455, 745, 932, 938
BstNI CCWGG 1 cut(s) 73
BstNSI RCATGY 1 cut(s) 985
BstSCI CCNGG 2 cut(s) 71, 653
BstUI CGCG 3 cut(s) 495, 935, 941
BstV2I GAAGAC 1 cut(s) 180
BstX2I RGATCY 1 cut(s) 403
BstYI RGATCY 1 cut(s) 403
BstZI CGGCCG 2 cut(s) 268, 936
BsuRI GGCC 5 cut(s) 270, 373, 458, 498, 938
BtgI CCRYGG 4 cut(s) 150, 355, 493, 933
BtrI CACGTC 3 cut(s) 416, 859, 1005
BtsCI GGATG 3 cut(s) 104, 108, 859
BtsIMutI CAGTG 2 cut(s) 33, 169
CciI TCATGA 1 cut(s) 733
CciNI GCGGCCGC 1 cut(s) 936
Cfr13I GGNCC 4 cut(s) 253, 279, 435, 497
Cfr42I CCGCGG 2 cut(s) 496, 936
CseI GACGC 5 cut(s) 155, 179, 512, 932, 952
Csp6I GTAC 4 cut(s) 362, 419, 795, 847
CviAII CATG 2 cut(s) 734, 982
CviQI GTAC 4 cut(s) 362, 419, 795, 847
DdeI CTNAG 5 cut(s) 36, 393, 450, 585, 711
DpnI GATC 3 cut(s) 141, 405, 617
DpnII GATC 3 cut(s) 139, 403, 615
DrdI GACNNNNNNGTC 1 cut(s) 1024
DseDI GACNNNNNNGTC 1 cut(s) 1024
EaeI YGGCCR 2 cut(s) 268, 936
EagI CGGCCG 2 cut(s) 268, 936
Eam1104I CTCTTC 2 cut(s) 106, 537
EarI CTCTTC 2 cut(s) 106, 537
EciI GGCGGA 1 cut(s) 322
EclXI CGGCCG 2 cut(s) 268, 936
Eco130I CCWWGG 4 cut(s) 249, 374, 534, 1036
Eco31I GGTCTC 1 cut(s) 782
Eco47I GGWCC 3 cut(s) 253, 279, 435
Eco52I CGGCCG 2 cut(s) 268, 936
Eco57I CTGAAG 4 cut(s) 223, 688, 734, 983
Eco88I CYCGRG 2 cut(s) 112, 950
EcoO109I RGGNCCY 1 cut(s) 435
EcoRII CCWGG 1 cut(s) 71
EcoT14I CCWWGG 4 cut(s) 249, 374, 534, 1036
ErhI CCWWGG 4 cut(s) 249, 374, 534, 1036
Esp3I CGTCTC 2 cut(s) 295, 526
FaeI CATG 2 cut(s) 737, 985
FaiI YATR 8 cut(s) 19, 134, 464, 471, 735, 983, 997, 1031
FaqI GGGAC 1 cut(s) 448
FatI CATG 2 cut(s) 733, 981
FauI CCCGC 1 cut(s) 415
FblI GTMKAC 2 cut(s) 95, 213
Fnu4HI GCNGC 9 cut(s) 271, 390, 459, 480, 496, 740, 933, 936, 939
FokI GGATG 3 cut(s) 91, 95, 866
Fsp4HI GCNGC 9 cut(s) 271, 390, 459, 480, 496, 740, 933, 936, 939
FspBI CTAG 1 cut(s) 9
GluI GCNGC 9 cut(s) 271, 390, 459, 480, 496, 740, 933, 936, 939
GsaI CCCAGC 1 cut(s) 875
GsuI CTGGAG 1 cut(s) 145
HaeIII GGCC 5 cut(s) 270, 373, 458, 498, 938
HapII CCGG 3 cut(s) 296, 654, 878
HgaI GACGC 5 cut(s) 155, 179, 512, 932, 952
Hin1I GRCGYC 5 cut(s) 147, 190, 632, 924, 1022
Hin1II CATG 2 cut(s) 737, 985
HincII GTYRAC 1 cut(s) 214
HindII GTYRAC 1 cut(s) 214
HindIII AAGCTT 1 cut(s) 746
HinfI GANTC 8 cut(s) 5, 92, 117, 155, 599, 650, 662, 881
HpaII CCGG 3 cut(s) 296, 654, 878
HphI GGTGA 4 cut(s) 325, 516, 610, 1005
Hpy166II GTNNAC 5 cut(s) 96, 214, 282, 419, 959
Hpy188I TCNGA 7 cut(s) 195, 242, 661, 707, 811, 1078, 1097
Hpy8I GTNNAC 5 cut(s) 96, 214, 282, 419, 959
HpyAV CCTTC 3 cut(s) 448, 574, 958
HpyCH4III ACNGT 3 cut(s) 279, 286, 313
HpyCH4IV ACGT 6 cut(s) 210, 415, 632, 858, 1004, 1022
HpyCH4V TGCA 1 cut(s) 772
HpyF10VI GCNNNNNNNGC 4 cut(s) 455, 745, 932, 938
HpyF3I CTNAG 5 cut(s) 36, 393, 450, 585, 711
HpySE526I ACGT 6 cut(s) 210, 415, 632, 858, 1004, 1022
Hsp92I GRCGYC 5 cut(s) 147, 190, 632, 924, 1022
Hsp92II CATG 2 cut(s) 737, 985
Kpn2I TCCGGA 1 cut(s) 877
KspI CCGCGG 2 cut(s) 496, 936
Kzo9I GATC 3 cut(s) 139, 403, 615
LmnI GCTCC 2 cut(s) 342, 880
LweI GCATC 1 cut(s) 759
MaeI CTAG 1 cut(s) 9
MaeII ACGT 6 cut(s) 210, 415, 632, 858, 1004, 1022
MaeIII GTNAC 3 cut(s) 644, 989, 1011
MalI GATC 3 cut(s) 141, 405, 617
MboI GATC 3 cut(s) 139, 403, 615
MflI RGATCY 1 cut(s) 403
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 5 cut(s) 59, 126, 514, 799, 823
MlyI GAGTC 4 cut(s) 101, 149, 608, 671
MmeI TCCRAC 1 cut(s) 639
MroI TCCGGA 1 cut(s) 877
MseI TTAA 2 cut(s) 486, 509
MspA1I CMGCKG 2 cut(s) 495, 935
MspI CCGG 3 cut(s) 296, 654, 878
MspR9I CCNGG 2 cut(s) 73, 655
MvaI CCWGG 1 cut(s) 73
MvnI CGCG 3 cut(s) 495, 935, 941
MwoI GCNNNNNNNGC 4 cut(s) 455, 745, 932, 938
NciI CCSGG 1 cut(s) 655
NdeII GATC 3 cut(s) 139, 403, 615
NlaIII CATG 2 cut(s) 737, 985
NlaIV GGNNCC 2 cut(s) 436, 499
NmuCI GTSAC 2 cut(s) 989, 1011
NotI GCGGCCGC 1 cut(s) 936
NspI RCATGY 1 cut(s) 985
NspV TTCGAA 2 cut(s) 124, 441
PagI TCATGA 1 cut(s) 733
PciI ACATGT 1 cut(s) 981
PcsI WCGNNNNNNNCGW 2 cut(s) 810, 1013
PfeI GAWTC 3 cut(s) 117, 650, 881
Pfl23II CGTACG 1 cut(s) 361
PflFI GACNNNGTC 2 cut(s) 1021, 1024
PkrI GCNGC 9 cut(s) 272, 391, 460, 481, 497, 741, 934, 937, 940
PleI GAGTC 4 cut(s) 100, 149, 607, 670
PpsI GAGTC 4 cut(s) 100, 149, 607, 670
PpuMI RGGWCCY 1 cut(s) 435
PscI ACATGT 1 cut(s) 981
Psp5II RGGWCCY 1 cut(s) 435
Psp6I CCWGG 1 cut(s) 71
PspFI CCCAGC 1 cut(s) 871
PspGI CCWGG 1 cut(s) 71
PspLI CGTACG 1 cut(s) 361
PspN4I GGNNCC 2 cut(s) 436, 499
PspPI GGNCC 4 cut(s) 253, 279, 435, 497
PspPPI RGGWCCY 1 cut(s) 435
PsuI RGATCY 1 cut(s) 403
PsyI GACNNNGTC 2 cut(s) 1021, 1024
RsaI GTAC 4 cut(s) 363, 420, 796, 848
RsaNI GTAC 4 cut(s) 362, 419, 795, 847
SacII CCGCGG 2 cut(s) 496, 936
SalI GTCGAC 1 cut(s) 212
SaqAI TTAA 2 cut(s) 486, 509
SatI GCNGC 9 cut(s) 271, 390, 459, 480, 496, 740, 933, 936, 939
Sau3AI GATC 3 cut(s) 139, 403, 615
Sau96I GGNCC 4 cut(s) 253, 279, 435, 497
SchI GAGTC 4 cut(s) 101, 149, 608, 671
ScrFI CCNGG 2 cut(s) 73, 655
SduI GDGCHC 1 cut(s) 42
SfaNI GCATC 1 cut(s) 759
Sfr303I CCGCGG 2 cut(s) 496, 936
SfuI TTCGAA 2 cut(s) 124, 441
SgrBI CCGCGG 2 cut(s) 496, 936
SgrDI CGTCGACG 1 cut(s) 212
SinI GGWCC 3 cut(s) 253, 279, 435
SmlI CTYRAG 1 cut(s) 605
SmoI CTYRAG 1 cut(s) 605
Sse9I AATT 5 cut(s) 59, 126, 514, 799, 823
SspMI CTAG 1 cut(s) 9
StyD4I CCNGG 2 cut(s) 71, 653
StyI CCWWGG 4 cut(s) 249, 374, 534, 1036
TaaI ACNGT 3 cut(s) 279, 286, 313
TaiI ACGT 6 cut(s) 213, 418, 635, 861, 1007, 1025
TaqI TCGA 7 cut(s) 124, 213, 228, 441, 576, 897, 915
TaqII GACCGA 1 cut(s) 152
TasI AATT 5 cut(s) 59, 126, 514, 799, 823
TauI GCSGC 9 cut(s) 273, 392, 461, 482, 498, 742, 935, 938, 941
TfiI GAWTC 3 cut(s) 117, 650, 881
Tru1I TTAA 2 cut(s) 486, 509
Tru9I TTAA 2 cut(s) 486, 509
TscAI CASTG 2 cut(s) 40, 169
TseFI GTSAC 2 cut(s) 989, 1011
Tsp45I GTSAC 2 cut(s) 989, 1011
TspDTI ATGAA 1 cut(s) 93
TspGWI ACGGA 4 cut(s) 167, 313, 344, 639
TspRI CASTG 2 cut(s) 40, 169
Tth111I GACNNNGTC 2 cut(s) 1021, 1024
VpaK11BI GGWCC 3 cut(s) 253, 279, 435
XapI RAATTY 2 cut(s) 126, 799
XceI RCATGY 1 cut(s) 985
XmiI GTMKAC 2 cut(s) 95, 213
XspI CTAG 1 cut(s) 9
ZraI GACGTC 2 cut(s) 633, 1023
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.