Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0012779

Physical Location & Seq

Genomic Coordinates Reverse (-)

2470592 .. 2472479

Gene Structure 1888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00279790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGAAATGGAGTCTAGTAGTTTTCTTTGCCCCATCAAATACACCCAACACAGAAACACCACCAAGAAATTGACTAAGCCTTCCCGGAAAATAGAGCCCGGCACATCCATCGCCCCAAAAATCATTCGGATATCGATGACCGATCACGACGCCACTGACTCATCCAGCGATGAAGAAGAGAGCGAGTACTACTTTGGTCGCCGGAGAGTGAAGCAATATATCAACGAAATCAGCATAGAAACCGACTTGAGAACTAATCCGGCGATCACCAACAATGGCCGGAAAAGGCCTGCCTTAGAGACACGGCCGGCTACTAGGCGGCCAGCACAGAAGAACTCTTGTCCACCGGCCAATGGCGGCGGCAACCGGAAGTTCAGAGGAGTACGACAACGTCCTTGGGGTAAATGGGCTGCCGAGATTAGAGATCCCGGCAAGCGTGTAAGACTCTGGTTGGGAACTTTCGACACAGCTGAGGAAGCCGCTATGGTGTACGATAATGCCGCCATTAAACTCCGAGGTCCTGATGCTCAAACAAACTTCTCACCACCGCAAATGGTTGAGACCGTTGCGGACTCGGTTGATGATCAGAATATTGTCAATGAAGTCGAGATTGAGCCGGAAACAACACCAAACGTGACTGTCTCGGTTTCTGGCTATGATTCCGGTGAGGAAACTCATCATCTCTCCTCCCCTACCTCTGTGCTACAGTTCCGAACTCATCCAATCGAAGAGGCCGAGCCACCGCAACTAGAGAAGCCAGCACTATCACAACCAACCCAGAAAGTGAATCATGTTCGAGAGTGTGGAGTGGAACATAATCAAATTCCAATGGAGTTGCGGTACATGGAAGAAGACGCGTTCAGGTTCCCAACACCAGAGTCCCCCTTGTTCGAGTCACCGCTCTTCTTCGAGTCGCCCTACTTCGACGACGCCGCAGCCGTGGCCGGACCGCTCCTGTTTGATGACTTCTGCGACTTGTACACCTTCGCCGACTCGTCTTTTTCTGCTCAGACGACGTCGTCGATGATGTGTCAAGGAGATGACTGTTTTCAAGACATTTTTGGTTCAGACCCTCTAGTGGTCCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

362

Amino Acids

40.71

Weight (kDa)

4.94

Isoelectric Point (pI)

61.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	124 - 173	8.4e-15	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012779)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27950 AT5G53290
fragaria_vesca	FvH4_7g30930
malus_domestica	MD01G1214500.v1.1 MD07G1284200.v1.1
prunus_persica	Prupe.2G306400_v2.0.a1
pyrus_communis	pycom01g22510 pycom07g25810
rosa_chinensis	RchiOBHm_Chr1g0380021
rosa_laevigata	RLG00000026340
rosa_multiflora	Rmu_sc0004184.1_g000009
rosa_roxburghii	Rroxscaffold_4G00279790
rosa_rugosa	Rorug01G0416600
rosa_samantha	Rh1AG441100 Rh1BG396800 Rh1CG410000 Rh1DG427600
rosa_wichuraiana	Rw1G038360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1018
AatII	GACGTC	1 cut(s)	1019
AccBSI	CCGCTC	2 cut(s)	901, 952
AccII	CGCG	1 cut(s)	857
AclWI	GGATC	1 cut(s)	419
AcoI	YGGCCR	5 cut(s)	277, 305, 320, 348, 942
AcsI	RAATTY	1 cut(s)	822
AcyI	GRCGYC	3 cut(s)	150, 930, 1016
AfaI	GTAC	5 cut(s)	188, 384, 491, 842, 980
AfiI	CCNNNNNNNGG	2 cut(s)	353, 1078
AflIII	ACRYGT	1 cut(s)	855
AgsI	TTSAA	1 cut(s)	1052
AluBI	AGCT	1 cut(s)	470
AluI	AGCT	1 cut(s)	470
Alw26I	GTCTC	3 cut(s)	293, 554, 646
AlwI	GGATC	1 cut(s)	419
AoxI	GGCC	7 cut(s)	277, 287, 305, 320, 348, 732, 942
ApeKI	GCWGC	2 cut(s)	410, 935
ApoI	RAATTY	1 cut(s)	822
AspS9I	GGNCC	3 cut(s)	518, 947, 1081
AsuC2I	CCSGG	3 cut(s)	85, 99, 429
AsuHPI	GGTGA	4 cut(s)	259, 534, 677, 888
AvaII	GGWCC	3 cut(s)	518, 947, 1081
BanII	GRGCYC	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	858
BbvCI	CCTCAGC	1 cut(s)	471
BbvI	GCAGC	2 cut(s)	397, 947
BccI	CCATC	2 cut(s)	41, 116
BceAI	ACGGC	2 cut(s)	320, 923
BcgI	CGANNNNNNTGC	2 cut(s)	91, 125
BclI	TGATCA	1 cut(s)	583
BcnI	CCSGG	3 cut(s)	85, 99, 429
BcoDI	GTCTC	3 cut(s)	293, 554, 646
BfaI	CTAG	4 cut(s)	15, 315, 749, 1076
BfmI	CTRYAG	1 cut(s)	704
BisI	GCNGC	8 cut(s)	320, 358, 361, 411, 480, 501, 933, 936
BlsI	GCNGC	8 cut(s)	321, 359, 362, 412, 481, 502, 934, 937
BmcAI	AGTACT	1 cut(s)	188
Bme1390I	CCNGG	3 cut(s)	85, 99, 429
Bme18I	GGWCC	3 cut(s)	518, 947, 1081
BmgT120I	GGNCC	3 cut(s)	518, 947, 1081
BmiI	GGNNCC	1 cut(s)	866
BmrFI	CCNGG	3 cut(s)	85, 99, 429
BmsI	GCATC	1 cut(s)	514
BpiI	GAAGAC	1 cut(s)	858
Bpu10I	CCTNAGC	1 cut(s)	471
BpuEI	CTTGAG	1 cut(s)	268
BpuMI	CCSGG	3 cut(s)	85, 99, 429
Bsa29I	ATCGAT	1 cut(s)	134
BsaHI	GRCGYC	3 cut(s)	150, 930, 1016
BsaI	GGTCTC	1 cut(s)	554
BsaJI	CCNNGG	3 cut(s)	395, 514, 939
BsaWI	WCCGGW	2 cut(s)	366, 662
BsaXI	ACNNNNNCTCC	2 cut(s)	824, 854
Bsc4I	CCNNNNNNNGG	2 cut(s)	353, 1078
Bse118I	RCCGGY	2 cut(s)	307, 346
BseCI	ATCGAT	1 cut(s)	134
BseDI	CCNNGG	3 cut(s)	395, 514, 939
BseGI	GGATG	3 cut(s)	104, 161, 718
BseLI	CCNNNNNNNGG	2 cut(s)	353, 1078
BseMII	CTCAG	2 cut(s)	462, 1022
BseRI	GAGGAG	2 cut(s)	393, 676
BseX3I	CGGCCG	1 cut(s)	305
BseXI	GCAGC	2 cut(s)	397, 947
Bsh1236I	CGCG	1 cut(s)	857
Bsh1285I	CGRYCG	1 cut(s)	308
BshFI	GGCC	7 cut(s)	279, 289, 307, 322, 350, 734, 944
BshVI	ATCGAT	1 cut(s)	134
BsiEI	CGRYCG	1 cut(s)	308
BslFI	GGGAC	1 cut(s)	865
BslI	CCNNNNNNNGG	2 cut(s)	353, 1078
BsmAI	GTCTC	3 cut(s)	293, 554, 646
BsmFI	GGGAC	1 cut(s)	865
BsnI	GGCC	7 cut(s)	279, 289, 307, 322, 350, 734, 944
Bso31I	GGTCTC	1 cut(s)	554
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp1407I	TGTACA	1 cut(s)	978
Bsp143I	GATC	4 cut(s)	142, 264, 424, 583
BspANI	GGCC	7 cut(s)	279, 289, 307, 322, 350, 734, 944
BspCNI	CTCAG	2 cut(s)	463, 1021
BspDI	ATCGAT	1 cut(s)	134
BspFNI	CGCG	1 cut(s)	857
BspLI	GGNNCC	1 cut(s)	866
BspPI	GGATC	1 cut(s)	419
BspQI	GCTCTTC	1 cut(s)	908
BspTNI	GGTCTC	1 cut(s)	554
BsrBI	CCGCTC	2 cut(s)	901, 952
BsrFI	RCCGGY	2 cut(s)	307, 346
BsrGI	TGTACA	1 cut(s)	978
BssAI	RCCGGY	2 cut(s)	307, 346
BssECI	CCNNGG	3 cut(s)	395, 514, 939
BssMI	GATC	4 cut(s)	142, 264, 424, 583
BssNI	GRCGYC	3 cut(s)	150, 930, 1016
BssT1I	CCWWGG	1 cut(s)	395
Bst4CI	ACNGT	4 cut(s)	565, 640, 708, 1046
Bst6I	CTCTTC	3 cut(s)	171, 723, 908
BstACI	GRCGYC	3 cut(s)	150, 930, 1016
BstAUI	TGTACA	1 cut(s)	978
BstC8I	GCNNGC	5 cut(s)	291, 309, 324, 434, 759
BstDEI	CTNAG	4 cut(s)	75, 295, 471, 1008
BstDSI	CCRYGG	1 cut(s)	939
BstF5I	GGATG	3 cut(s)	104, 161, 718
BstFNI	CGCG	1 cut(s)	857
BstKTI	GATC	4 cut(s)	145, 267, 427, 586
BstMAI	GTCTC	3 cut(s)	293, 554, 646
BstMBI	GATC	4 cut(s)	142, 264, 424, 583
BstMCI	CGRYCG	1 cut(s)	308
BstMWI	GCNNNNNNNGC	2 cut(s)	476, 941
BstSCI	CCNGG	3 cut(s)	83, 97, 427
BstSFI	CTRYAG	1 cut(s)	704
BstUI	CGCG	1 cut(s)	857
BstV1I	GCAGC	2 cut(s)	397, 947
BstV2I	GAAGAC	1 cut(s)	858
BstX2I	RGATCY	1 cut(s)	424
BstYI	RGATCY	1 cut(s)	424
BstZI	CGGCCG	1 cut(s)	305
Bsu15I	ATCGAT	1 cut(s)	134
BsuRI	GGCC	7 cut(s)	279, 289, 307, 322, 350, 734, 944
BsuTUI	ATCGAT	1 cut(s)	134
BtgI	CCRYGG	1 cut(s)	939
BtgZI	GCGATG	2 cut(s)	94, 183
BtsCI	GGATG	3 cut(s)	104, 161, 718
BtsIMutI	CAGTG	1 cut(s)	153
Cac8I	GCNNGC	5 cut(s)	291, 309, 324, 434, 759
Cfr10I	RCCGGY	2 cut(s)	307, 346
Cfr13I	GGNCC	3 cut(s)	518, 947, 1081
ClaI	ATCGAT	1 cut(s)	134
CpoI	CGGWCCG	1 cut(s)	947
CseI	GACGC	3 cut(s)	158, 863, 938
Csp6I	GTAC	5 cut(s)	187, 383, 490, 841, 979
CspI	CGGWCCG	1 cut(s)	947
CviAII	CATG	2 cut(s)	791, 844
CviQI	GTAC	5 cut(s)	187, 383, 490, 841, 979
DdeI	CTNAG	4 cut(s)	75, 295, 471, 1008
DpnI	GATC	4 cut(s)	144, 266, 426, 585
DpnII	GATC	4 cut(s)	142, 264, 424, 583
DrdI	GACNNNNNNGTC	1 cut(s)	1018
DseDI	GACNNNNNNGTC	1 cut(s)	1018
EaeI	YGGCCR	5 cut(s)	277, 305, 320, 348, 942
EagI	CGGCCG	1 cut(s)	305
Eam1104I	CTCTTC	3 cut(s)	171, 723, 908
EarI	CTCTTC	3 cut(s)	171, 723, 908
EclXI	CGGCCG	1 cut(s)	305
Eco130I	CCWWGG	1 cut(s)	395
Eco147I	AGGCCT	1 cut(s)	289
Eco24I	GRGCYC	1 cut(s)	99
Eco31I	GGTCTC	1 cut(s)	554
Eco32I	GATATC	1 cut(s)	132
Eco47I	GGWCC	3 cut(s)	518, 947, 1081
Eco52I	CGGCCG	1 cut(s)	305
EcoO109I	RGGNCCY	1 cut(s)	518
EcoRV	GATATC	1 cut(s)	132
EcoT14I	CCWWGG	1 cut(s)	395
EcoT38I	GRGCYC	1 cut(s)	99
ErhI	CCWWGG	1 cut(s)	395
FaeI	CATG	2 cut(s)	794, 847
FaiI	YATR	7 cut(s)	219, 236, 485, 657, 792, 816, 845
FaqI	GGGAC	1 cut(s)	865
FatI	CATG	2 cut(s)	790, 843
FbaI	TGATCA	1 cut(s)	583
Fnu4HI	GCNGC	8 cut(s)	320, 358, 361, 411, 480, 501, 933, 936
FokI	GGATG	3 cut(s)	91, 148, 705
FriOI	GRGCYC	1 cut(s)	99
Fsp4HI	GCNGC	8 cut(s)	320, 358, 361, 411, 480, 501, 933, 936
FspBI	CTAG	4 cut(s)	15, 315, 749, 1076
GluI	GCNGC	8 cut(s)	320, 358, 361, 411, 480, 501, 933, 936
HaeIII	GGCC	7 cut(s)	279, 289, 307, 322, 350, 734, 944
HgaI	GACGC	3 cut(s)	158, 863, 938
Hin1I	GRCGYC	3 cut(s)	150, 930, 1016
Hin1II	CATG	2 cut(s)	794, 847
HphI	GGTGA	4 cut(s)	259, 534, 677, 888
Hpy166II	GTNNAC	3 cut(s)	344, 490, 981
Hpy188I	TCNGA	8 cut(s)	129, 377, 515, 588, 713, 1011, 1069, 1088
Hpy188III	TCNNGA	5 cut(s)	146, 521, 607, 797, 1052
Hpy8I	GTNNAC	3 cut(s)	344, 490, 981
Hpy99I	CGWCG	6 cut(s)	152, 929, 932, 1018, 1021, 1024
HpyAV	CCTTC	2 cut(s)	90, 994
HpyCH4III	ACNGT	4 cut(s)	565, 640, 708, 1046
HpyCH4IV	ACGT	3 cut(s)	391, 633, 1016
HpyF10VI	GCNNNNNNNGC	2 cut(s)	476, 941
HpyF3I	CTNAG	4 cut(s)	75, 295, 471, 1008
HpySE526I	ACGT	3 cut(s)	391, 633, 1016
Hsp92I	GRCGYC	3 cut(s)	150, 930, 1016
Hsp92II	CATG	2 cut(s)	794, 847
KroI	GCCGGC	1 cut(s)	307
KroNI	GCCGGC	1 cut(s)	309
Ksp22I	TGATCA	1 cut(s)	583
Kzo9I	GATC	4 cut(s)	142, 264, 424, 583
LguI	GCTCTTC	1 cut(s)	908
LmnI	GCTCC	1 cut(s)	957
Lsp1109I	GCAGC	2 cut(s)	397, 947
LweI	GCATC	1 cut(s)	514
MaeI	CTAG	4 cut(s)	15, 315, 749, 1076
MaeII	ACGT	3 cut(s)	391, 633, 1016
MaeIII	GTNAC	2 cut(s)	634, 894
MalI	GATC	4 cut(s)	144, 266, 426, 585
MbiI	CCGCTC	2 cut(s)	901, 952
MboI	GATC	4 cut(s)	142, 264, 424, 583
MboII	GAAGA	8 cut(s)	185, 188, 343, 740, 860, 863, 895, 898
MflI	RGATCY	1 cut(s)	424
MhlI	GDGCHC	1 cut(s)	99
MluCI	AATT	2 cut(s)	68, 822
MluI	ACGCGT	1 cut(s)	855
MlyI	GAGTC	8 cut(s)	20, 152, 438, 566, 887, 902, 920, 986
MnlI	CCTC	8 cut(s)	371, 466, 509, 661, 697, 706, 724, 1083
MroNI	GCCGGC	1 cut(s)	307
MseI	TTAA	1 cut(s)	507
MspA1I	CMGCKG	1 cut(s)	470
MspR9I	CCNGG	3 cut(s)	85, 99, 429
MvnI	CGCG	1 cut(s)	857
MwoI	GCNNNNNNNGC	2 cut(s)	476, 941
NaeI	GCCGGC	1 cut(s)	309
NciI	CCSGG	3 cut(s)	85, 99, 429
NdeII	GATC	4 cut(s)	142, 264, 424, 583
NgoMIV	GCCGGC	1 cut(s)	307
NlaIII	CATG	2 cut(s)	794, 847
NlaIV	GGNNCC	1 cut(s)	866
NmeAIII	GCCGAG	2 cut(s)	439, 760
NmuCI	GTSAC	2 cut(s)	634, 894
PceI	AGGCCT	1 cut(s)	289
PciSI	GCTCTTC	1 cut(s)	908
PcsI	WCGNNNNNNNCGW	3 cut(s)	732, 936, 1019
PdiI	GCCGGC	1 cut(s)	309
PfeI	GAWTC	2 cut(s)	659, 787
PflFI	GACNNNGTC	3 cut(s)	390, 1015, 1018
PfoI	TCCNGGA	1 cut(s)	83
PkrI	GCNGC	8 cut(s)	321, 359, 362, 412, 481, 502, 934, 937
PleI	GAGTC	8 cut(s)	19, 152, 438, 566, 886, 901, 919, 986
PpsI	GAGTC	8 cut(s)	19, 152, 438, 566, 886, 901, 919, 986
PpuMI	RGGWCCY	1 cut(s)	518
Psp5II	RGGWCCY	1 cut(s)	518
PspN4I	GGNNCC	1 cut(s)	866
PspPI	GGNCC	3 cut(s)	518, 947, 1081
PspPPI	RGGWCCY	1 cut(s)	518
PsuI	RGATCY	1 cut(s)	424
PsyI	GACNNNGTC	3 cut(s)	390, 1015, 1018
PvuII	CAGCTG	1 cut(s)	470
RsaI	GTAC	5 cut(s)	188, 384, 491, 842, 980
RsaNI	GTAC	5 cut(s)	187, 383, 490, 841, 979
Rsr2I	CGGWCCG	1 cut(s)	947
RsrII	CGGWCCG	1 cut(s)	947
SapI	GCTCTTC	1 cut(s)	908
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	8 cut(s)	320, 358, 361, 411, 480, 501, 933, 936
Sau3AI	GATC	4 cut(s)	142, 264, 424, 583
Sau96I	GGNCC	3 cut(s)	518, 947, 1081
ScaI	AGTACT	1 cut(s)	188
SchI	GAGTC	8 cut(s)	20, 152, 438, 566, 887, 902, 920, 986
ScrFI	CCNGG	3 cut(s)	85, 99, 429
SduI	GDGCHC	1 cut(s)	99
SetI	ASST	8 cut(s)	394, 472, 520, 636, 698, 866, 986, 1019
SfaNI	GCATC	1 cut(s)	514
SfcI	CTRYAG	1 cut(s)	704
SinI	GGWCC	3 cut(s)	518, 947, 1081
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
Sse9I	AATT	2 cut(s)	68, 822
SseBI	AGGCCT	1 cut(s)	289
SspI	AATATT	1 cut(s)	592
SspMI	CTAG	4 cut(s)	15, 315, 749, 1076
StuI	AGGCCT	1 cut(s)	289
StyD4I	CCNGG	3 cut(s)	83, 97, 427
StyI	CCWWGG	1 cut(s)	395
TaaI	ACNGT	4 cut(s)	565, 640, 708, 1046
TaiI	ACGT	3 cut(s)	394, 636, 1019
TaqI	TCGA	9 cut(s)	134, 462, 606, 726, 796, 891, 909, 924, 1022
TaqII	GACCGA	1 cut(s)	155
TasI	AATT	2 cut(s)	68, 822
TatI	WGTACW	2 cut(s)	186, 978
TauI	GCSGC	6 cut(s)	322, 360, 363, 482, 503, 935
TfiI	GAWTC	2 cut(s)	659, 787
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TscAI	CASTG	1 cut(s)	160
TseFI	GTSAC	2 cut(s)	634, 894
TseI	GCWGC	2 cut(s)	410, 935
Tsp45I	GTSAC	2 cut(s)	634, 894
TspDTI	ATGAA	2 cut(s)	186, 615
TspRI	CASTG	1 cut(s)	160
Tth111I	GACNNNGTC	3 cut(s)	390, 1015, 1018
VpaK11BI	GGWCC	3 cut(s)	518, 947, 1081
XapI	RAATTY	1 cut(s)	822
XspI	CTAG	4 cut(s)	15, 315, 749, 1076
ZraI	GACGTC	1 cut(s)	1017
ZrmI	AGTACT	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.