Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007621

Physical Location & Seq

Genomic Coordinates Reverse (-)

14132811 .. 14135292

Gene Structure 2482 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G28610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1230 bp

ATGGAGGCTCGTCCAGTTCATAGATCAGGTTCGAGAGACCTCACACGCACTTCTTCAATCCCATCTACACAAAAACCTTCACCAGTAGAAGATAGTTTCATGAGATCAGATAACAACAGTCAGTTAATGTCTAGACCATTAGGACAAACCTACCATTTACTTTCATCTAGTAACGGTGGAGCTGTTGGACATATATGTTCTTCTTCATCATCTGGTTTTGCAACCAATCTCCATTACTCAACTATGGTATCTCATGAGAAACAACAACACTACACAGGAAGCAGCAGTAATAATGCTGTGCAGACACCAAGCAACAACGATAGTGCTTGGTGTCATGATTCATTGCCAGGAGGGTTTCTTGACTTCCATGAAACCAACCCGGCGATTCAAAACAACTGTCAGATTGAGGATGGTGGCATTGCGGCTGCTTTTGATGACATTCAAAAACGAAGTGATTGGCATGAATGGGCTGACCATTTGATCACTGATGATGATCCTTTGATGTCTACTAACTGGAATGATCTCTTGCTTGAAACAAATTCCAATTCAGATTCAAAGGACCAGAAGACACTGCAAATTCCGCAACCTCAGATTGTTCAGCAGCAACCTTCTCCGTCTGTGGAATTGCGACCTGTTAGCACAACATCTTCAAACAGCAATAACGGAACGGGCAAGGCACGAATGCGTTGGACGCCAGAGCTTCACGAGGCTTTTGTTGAGGCTGTCAACAGTCTTGGCGGTAGTGAAAGAGCTACTCCTAAAGGGGTACTGAAGATTATGAAAGTTGAAGGCTTGACTATATATCATGTTAAAAGCCATTTACAGAAATATAGGACAGCTAGATATCGGCCAGAACCATCAGAAACTGGTTCGCCAGAAAGGAAGTTGACACCGCTTGAACATATAACATCTCTTGATTTGAAAGGTGGGATAGGTATTACAGAGGCTCTACGACTTCAGATGGAAGTACAGAAGCAACTCCATGAGCAGCTCGAGATTCAAAGAAACCTGCAACTCCGAATAGAAGAACAAGGCAAGTACCTGCAAATGATGTTCGAGAAGCAAAACTCTGGTCTTACCAAAGGGACAGCCTCAACATCAGATTCCGCAGCCAAATCTGAACAAGAAGACAAGAAGACTGCTGATTCGAAGGAGGTTCCAGAAGAAGAAACCAGGAAATGTGAGGAACTAGAATCTCCACAGCCAAAGCGTCCCAAAATCGATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007275 GO:0007623 GO:0008150 GO:0009267 GO:0009314 GO:0009416 GO:0009555 GO:0009605 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0016036 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048511 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055063 GO:0055081 GO:0060255 GO:0065007 GO:0065008 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071496 GO:0072505 GO:0080090 GO:0098771 GO:0104004 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

409

Amino Acids

45.55

Weight (kDa)

5.78

Isoelectric Point (pI)

61.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	227 - 278	9.6e-09	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	313 - 356	2e-23	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28610
fragaria_vesca	FvH4_2g20730 FvH4_2g20730
malus_domestica	MD00G1060900.v1.1 MD05G1189400.v1.1
prunus_persica	Prupe.8G216800_v2.0.a1 Prupe.8G216800_v2.0.a1 Prupe.8G216800_v2.0.a1 Prupe.8G216800_v2.0.a1 Prupe.8G216800_v2.0.a1
pyrus_communis	pycom05g17450 pycom10g15330
rosa_chinensis	RchiOBHm_Chr6g0286911
rosa_laevigata	RLG00000012527
rosa_multiflora	Rmu_sc0002520.1_g000011
rosa_roxburghii	Rroxscaffold_7G00181810
rosa_rugosa	Rorug06G0184800 Rorug06G0184900 Rorug06G0185000
rosa_samantha	Rh6AG296700 Rh6BG301300 Rh6CG308800 Rh6DG292600
rosa_wichuraiana	Rw6G025600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	1017, 1050
AccI	GTMKAC	1 cut(s)	506
AciI	CCGC	5 cut(s)	422, 581, 738, 893, 1107
AclWI	GGATC	1 cut(s)	488
AcoI	YGGCCR	1 cut(s)	848
AcsI	RAATTY	2 cut(s)	538, 576
AcuI	CTGAAG	2 cut(s)	791, 941
AcyI	GRCGYC	1 cut(s)	692
AfaI	GTAC	3 cut(s)	768, 969, 1040
AjnI	CCWGG	2 cut(s)	346, 1172
AluBI	AGCT	5 cut(s)	182, 700, 752, 839, 991
AluI	AGCT	5 cut(s)	182, 700, 752, 839, 991
Alw26I	GTCTC	1 cut(s)	30
AlwI	GGATC	1 cut(s)	488
AlwNI	CAGNNNCTG	1 cut(s)	866
Ama87I	CYCGRG	1 cut(s)	992
AoxI	GGCC	1 cut(s)	848
ApeKI	GCWGC	5 cut(s)	282, 425, 601, 988, 1109
ApoI	RAATTY	2 cut(s)	538, 576
ArsI	GACNNNNNNTTYG	6 cut(s)	382, 414, 1057, 1089, 1129, 1161
AspS9I	GGNCC	1 cut(s)	559
AsuC2I	CCSGG	1 cut(s)	380
AsuHPI	GGTGA	1 cut(s)	72
AsuII	TTCGAA	1 cut(s)	1148
AvaI	CYCGRG	1 cut(s)	992
AvaII	GGWCC	1 cut(s)	559
BaeI	ACNNNNGTAYC	2 cut(s)	231, 264
BauI	CACGAG	1 cut(s)	704
BbsI	GAAGAC	3 cut(s)	572, 1134, 1142
BbvI	GCAGC	5 cut(s)	294, 412, 613, 1000, 1121
BccI	CCATC	4 cut(s)	70, 404, 865, 955
BciT130I	CCWGG	2 cut(s)	348, 1174
BclI	TGATCA	1 cut(s)	480
BcnI	CCSGG	1 cut(s)	380
BcoDI	GTCTC	1 cut(s)	30
BfaI	CTAG	4 cut(s)	132, 168, 840, 1190
BfuAI	ACCTGC	2 cut(s)	1017, 1050
BisI	GCNGC	6 cut(s)	283, 423, 426, 602, 989, 1110
BlsI	GCNGC	6 cut(s)	284, 424, 427, 603, 990, 1111
Bme1390I	CCNGG	3 cut(s)	348, 380, 1174
Bme18I	GGWCC	1 cut(s)	559
BmeT110I	CYCGRG	1 cut(s)	992
BmgT120I	GGNCC	1 cut(s)	559
BmiI	GGNNCC	1 cut(s)	1158
BmrFI	CCNGG	3 cut(s)	348, 380, 1174
BpiI	GAAGAC	3 cut(s)	572, 1134, 1142
Bpu14I	TTCGAA	1 cut(s)	1148
BpuMI	CCSGG	1 cut(s)	380
Bsa29I	ATCGAT	1 cut(s)	1221
BsaBI	GATNNNNATC	1 cut(s)	492
BsaHI	GRCGYC	1 cut(s)	692
BsaI	GGTCTC	1 cut(s)	30
Bse1I	ACTGG	4 cut(s)	14, 83, 518, 871
Bse3DI	GCAATG	2 cut(s)	341, 417
Bse8I	GATNNNNATC	1 cut(s)	492
BseBI	CCWGG	2 cut(s)	348, 1174
BseCI	ATCGAT	1 cut(s)	1221
BseGI	GGATG	1 cut(s)	415
BseJI	GATNNNNATC	1 cut(s)	492
BseMI	GCAATG	2 cut(s)	341, 417
BseMII	CTCAG	1 cut(s)	602
BseNI	ACTGG	4 cut(s)	14, 83, 518, 871
BseXI	GCAGC	5 cut(s)	294, 412, 613, 1000, 1121
BsgI	GTGCAG	1 cut(s)	320
BshFI	GGCC	1 cut(s)	850
BshVI	ATCGAT	1 cut(s)	1221
BsiHKCI	CYCGRG	1 cut(s)	992
BsiSI	CCGG	1 cut(s)	380
BslFI	GGGAC	2 cut(s)	1099, 1197
BsmAI	GTCTC	1 cut(s)	30
BsmFI	GGGAC	2 cut(s)	1099, 1197
BsmI	GAATGC	1 cut(s)	687
BsnI	GGCC	1 cut(s)	850
Bso31I	GGTCTC	1 cut(s)	30
BsoBI	CYCGRG	1 cut(s)	992
Bsp119I	TTCGAA	1 cut(s)	1148
Bsp143I	GATC	5 cut(s)	23, 104, 480, 493, 520
BspACI	CCGC	5 cut(s)	422, 581, 738, 893, 1107
BspANI	GGCC	1 cut(s)	850
BspCNI	CTCAG	1 cut(s)	601
BspDI	ATCGAT	1 cut(s)	1221
BspHI	TCATGA	3 cut(s)	99, 253, 334
BspLI	GGNNCC	1 cut(s)	1158
BspMI	ACCTGC	2 cut(s)	1017, 1050
BspPI	GGATC	1 cut(s)	488
BspT104I	TTCGAA	1 cut(s)	1148
BspTNI	GGTCTC	1 cut(s)	30
BsrDI	GCAATG	2 cut(s)	341, 417
BsrI	ACTGG	4 cut(s)	14, 83, 518, 871
BssMI	GATC	5 cut(s)	23, 104, 480, 493, 520
BssNI	GRCGYC	1 cut(s)	692
BssSI	CACGAG	1 cut(s)	704
Bst2BI	CACGAG	1 cut(s)	704
Bst2UI	CCWGG	2 cut(s)	348, 1174
Bst4CI	ACNGT	4 cut(s)	119, 176, 398, 731
BstACI	GRCGYC	1 cut(s)	692
BstBI	TTCGAA	1 cut(s)	1148
BstDEI	CTNAG	1 cut(s)	588
BstF5I	GGATG	1 cut(s)	415
BstKTI	GATC	5 cut(s)	26, 107, 483, 496, 523
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	5 cut(s)	23, 104, 480, 493, 520
BstMWI	GCNNNNNNNGC	2 cut(s)	580, 691
BstNI	CCWGG	2 cut(s)	348, 1174
BstSCI	CCNGG	3 cut(s)	346, 378, 1172
BstV1I	GCAGC	5 cut(s)	294, 412, 613, 1000, 1121
BstV2I	GAAGAC	3 cut(s)	572, 1134, 1142
Bsu15I	ATCGAT	1 cut(s)	1221
BsuRI	GGCC	1 cut(s)	850
BsuTUI	ATCGAT	1 cut(s)	1221
BtsCI	GGATG	1 cut(s)	415
BtsI	GCAGTG	1 cut(s)	569
BtsIMutI	CAGTG	2 cut(s)	483, 569
BveI	ACCTGC	2 cut(s)	1017, 1050
CaiI	CAGNNNCTG	1 cut(s)	866
CciI	TCATGA	3 cut(s)	99, 253, 334
Cfr13I	GGNCC	1 cut(s)	559
ClaI	ATCGAT	1 cut(s)	1221
CseI	GACGC	2 cut(s)	700, 1199
Csp6I	GTAC	3 cut(s)	767, 968, 1039
CviAII	CATG	7 cut(s)	100, 254, 335, 368, 461, 806, 983
CviQI	GTAC	3 cut(s)	767, 968, 1039
DdeI	CTNAG	1 cut(s)	588
DpnI	GATC	5 cut(s)	25, 106, 482, 495, 522
DpnII	GATC	5 cut(s)	23, 104, 480, 493, 520
EaeI	YGGCCR	1 cut(s)	848
Eco31I	GGTCTC	1 cut(s)	30
Eco32I	GATATC	1 cut(s)	845
Eco47I	GGWCC	1 cut(s)	559
Eco57I	CTGAAG	2 cut(s)	791, 941
Eco88I	CYCGRG	1 cut(s)	992
EcoRII	CCWGG	2 cut(s)	346, 1172
EcoRV	GATATC	1 cut(s)	845
FaeI	CATG	7 cut(s)	103, 257, 338, 371, 464, 809, 986
FaqI	GGGAC	2 cut(s)	1099, 1197
FatI	CATG	7 cut(s)	99, 253, 334, 367, 460, 805, 982
FbaI	TGATCA	1 cut(s)	480
FblI	GTMKAC	1 cut(s)	506
Fnu4HI	GCNGC	6 cut(s)	283, 423, 426, 602, 989, 1110
FokI	GGATG	1 cut(s)	422
Fsp4HI	GCNGC	6 cut(s)	283, 423, 426, 602, 989, 1110
FspBI	CTAG	4 cut(s)	132, 168, 840, 1190
GluI	GCNGC	6 cut(s)	283, 423, 426, 602, 989, 1110
HaeIII	GGCC	1 cut(s)	850
HapII	CCGG	1 cut(s)	380
HgaI	GACGC	2 cut(s)	700, 1199
Hin1I	GRCGYC	1 cut(s)	692
Hin1II	CATG	7 cut(s)	103, 257, 338, 371, 464, 809, 986
HincII	GTYRAC	2 cut(s)	727, 888
HindII	GTYRAC	2 cut(s)	727, 888
HinfI	GANTC	7 cut(s)	338, 385, 551, 997, 1103, 1145, 1193
HpaII	CCGG	1 cut(s)	380
HphI	GGTGA	1 cut(s)	72
Hpy166II	GTNNAC	3 cut(s)	507, 727, 888
Hpy188I	TCNGA	9 cut(s)	109, 402, 550, 591, 862, 960, 1019, 1102, 1120
Hpy8I	GTNNAC	3 cut(s)	507, 727, 888
HpyAV	CCTTC	4 cut(s)	87, 618, 782, 1144
HpyCH4III	ACNGT	4 cut(s)	119, 176, 398, 731
HpyCH4V	TGCA	5 cut(s)	221, 301, 574, 1012, 1045
HpyF10VI	GCNNNNNNNGC	2 cut(s)	580, 691
HpyF3I	CTNAG	1 cut(s)	588
Hsp92I	GRCGYC	1 cut(s)	692
Hsp92II	CATG	7 cut(s)	103, 257, 338, 371, 464, 809, 986
Ksp22I	TGATCA	1 cut(s)	480
Kzo9I	GATC	5 cut(s)	23, 104, 480, 493, 520
LmnI	GCTCC	1 cut(s)	179
Lsp1109I	GCAGC	5 cut(s)	294, 412, 613, 1000, 1121
MaeI	CTAG	4 cut(s)	132, 168, 840, 1190
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	5 cut(s)	25, 106, 482, 495, 522
MboI	GATC	5 cut(s)	23, 104, 480, 493, 520
MluCI	AATT	5 cut(s)	538, 544, 576, 623, 1225
MmeI	TCCRAC	2 cut(s)	166, 668
MseI	TTAA	2 cut(s)	125, 810
MspI	CCGG	1 cut(s)	380
MspR9I	CCNGG	3 cut(s)	348, 380, 1174
Mva1269I	GAATGC	1 cut(s)	687
MvaI	CCWGG	2 cut(s)	348, 1174
MwoI	GCNNNNNNNGC	2 cut(s)	580, 691
NciI	CCSGG	1 cut(s)	380
NdeII	GATC	5 cut(s)	23, 104, 480, 493, 520
NlaIII	CATG	7 cut(s)	103, 257, 338, 371, 464, 809, 986
NlaIV	GGNNCC	1 cut(s)	1158
NspV	TTCGAA	1 cut(s)	1148
PaeR7I	CTCGAG	1 cut(s)	992
PagI	TCATGA	3 cut(s)	99, 253, 334
PctI	GAATGC	1 cut(s)	687
PfeI	GAWTC	7 cut(s)	338, 385, 551, 997, 1103, 1145, 1193
PkrI	GCNGC	6 cut(s)	284, 424, 427, 603, 990, 1111
Psp6I	CCWGG	2 cut(s)	346, 1172
PspGI	CCWGG	2 cut(s)	346, 1172
PspN4I	GGNNCC	1 cut(s)	1158
PspPI	GGNCC	1 cut(s)	559
PstNI	CAGNNNCTG	1 cut(s)	866
RsaI	GTAC	3 cut(s)	768, 969, 1040
RsaNI	GTAC	3 cut(s)	767, 968, 1039
SaqAI	TTAA	2 cut(s)	125, 810
SatI	GCNGC	6 cut(s)	283, 423, 426, 602, 989, 1110
Sau3AI	GATC	5 cut(s)	23, 104, 480, 493, 520
Sau96I	GGNCC	1 cut(s)	559
ScrFI	CCNGG	3 cut(s)	348, 380, 1174
Sfr274I	CTCGAG	1 cut(s)	992
SfuI	TTCGAA	1 cut(s)	1148
SinI	GGWCC	1 cut(s)	559
SlaI	CTCGAG	1 cut(s)	992
SmlI	CTYRAG	1 cut(s)	992
SmoI	CTYRAG	1 cut(s)	992
Sse9I	AATT	5 cut(s)	538, 544, 576, 623, 1225
SsiI	CCGC	5 cut(s)	422, 581, 738, 893, 1107
SspMI	CTAG	4 cut(s)	132, 168, 840, 1190
StyD4I	CCNGG	3 cut(s)	346, 378, 1172
TaaI	ACNGT	4 cut(s)	119, 176, 398, 731
TaqI	TCGA	5 cut(s)	32, 993, 1056, 1148, 1221
TasI	AATT	5 cut(s)	538, 544, 576, 623, 1225
TatI	WGTACW	1 cut(s)	967
TauI	GCSGC	1 cut(s)	425
TfiI	GAWTC	7 cut(s)	338, 385, 551, 997, 1103, 1145, 1193
Tru1I	TTAA	2 cut(s)	125, 810
Tru9I	TTAA	2 cut(s)	125, 810
TscAI	CASTG	2 cut(s)	490, 576
TseI	GCWGC	5 cut(s)	282, 425, 601, 988, 1109
TspDTI	ATGAA	8 cut(s)	8, 88, 153, 195, 330, 384, 477, 794
TspGWI	ACGGA	2 cut(s)	603, 678
TspRI	CASTG	2 cut(s)	490, 576
VpaK11BI	GGWCC	1 cut(s)	559
XapI	RAATTY	2 cut(s)	538, 576
XbaI	TCTAGA	1 cut(s)	131
XhoI	CTCGAG	1 cut(s)	992
XmiI	GTMKAC	1 cut(s)	506
XspI	CTAG	4 cut(s)	132, 168, 840, 1190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.