Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0007621

Physical Location & Seq

Genomic Coordinates Forward (+)

49449295 .. 49450320

Gene Structure 1026 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG296700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGGAGGTACGCCCTGCCATTCGGAGATCAGCTGCAAAGCAGCTTAGTCACATGGGAGTCTCTGGAGCACTATCTTCATCTTTACCAGTCCTTCAACCCTCATCGGAGGAGACGTATCCCAAGTTGCAAGACACACAGCAGGTTTCGATGGAAAGGCCTGTGGCACAAGTAGGTCACTTAACATCTAACAGTGGCGTAGTTGGTCACATATTTTCATCACCCTCAAGATTCTCTACAGATCTTCACTACTCATCTGTTTCACCTCATGAGAAGCAGTCAAGAAATAATCCTTTCATTTTGCAGTCCTCAAGTTCTGTGTCTATGCCATTACCACATTCTTCTCCTTCAGGAGTTTTTCAATCTACAGCATCTTGTGCCTATTCCAAAGAAAACAATGGTTCCTGGGGTACAGATTCTCTGCCAGGGTTCCTTGATTTTCCTGTAAATACCCCTGTTGAGAATAGTCAAATAGAGAGCAGTAGTTGTAGTGGCATTCTGGCTGCTGAAGATATAAGTAAGCAAAATGATTGGCAGGAGTGGGCAAACCAGCTAATTACCGATGATGATGCTCTGACTTCTAATTGGAGTGACCTTCTTGTTGACAACAATGTTACAGATCTGGAACCAAAGATGACATACCAGGTTCCCAAACCATCTTTGAATTTTTCAGCTCAGCAGTCCCAAGTTTCTCAGCAACAACCTGCTTCATCTAGAGAAATCATTCCTGCTCCATCTAGAGAAATCCTTCCTGTTCAATCCGAGGATATCATTGCTGTTACTACTCCTTCCTCGGCTAACAGTGCCGCAGCGAAGCCACGTATGCGTTGGACACCAGAACTTCATGAAGCTTTTGTGGAAGCTGTTAACCAACTTGGTGGTAGTGAAAGTGAGTACTTATTTGGCTTCACTAATTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007275 GO:0007623 GO:0008150 GO:0009267 GO:0009314 GO:0009416 GO:0009555 GO:0009605 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0016036 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048511 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055063 GO:0055081 GO:0060255 GO:0065007 GO:0065008 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071496 GO:0072505 GO:0080090 GO:0098771 GO:0104004 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

305

Amino Acids

33.16

Weight (kDa)

4.83

Isoelectric Point (pI)

75.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28610
fragaria_vesca	FvH4_2g20730 FvH4_2g20730
malus_domestica	MD00G1060900.v1.1 MD05G1189400.v1.1
prunus_persica	Prupe.8G216800_v2.0.a1 Prupe.8G216800_v2.0.a1 Prupe.8G216800_v2.0.a1 Prupe.8G216800_v2.0.a1 Prupe.8G216800_v2.0.a1
pyrus_communis	pycom05g17450 pycom10g15330
rosa_chinensis	RchiOBHm_Chr6g0286911
rosa_laevigata	RLG00000012527
rosa_multiflora	Rmu_sc0002520.1_g000011
rosa_roxburghii	Rroxscaffold_7G00181810
rosa_rugosa	Rorug06G0184800 Rorug06G0184900 Rorug06G0185000
rosa_samantha	Rh6AG296700 Rh6BG301300 Rh6CG308800 Rh6DG292600
rosa_wichuraiana	Rw6G025600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	130, 709
AciI	CCGC	1 cut(s)	804
AcsI	RAATTY	1 cut(s)	661
AcuI	CTGAAG	2 cut(s)	330, 525
AfaI	GTAC	3 cut(s)	9, 409, 893
AgsI	TTSAA	4 cut(s)	95, 359, 661, 755
AjnI	CCWGG	3 cut(s)	401, 421, 639
AluBI	AGCT	6 cut(s)	32, 43, 550, 671, 848, 860
AluI	AGCT	6 cut(s)	32, 43, 550, 671, 848, 860
Alw21I	GWGCWC	1 cut(s)	70
Alw26I	GTCTC	2 cut(s)	64, 104
AoxI	GGCC	1 cut(s)	155
ApeKI	GCWGC	4 cut(s)	32, 40, 500, 806
ApoI	RAATTY	1 cut(s)	661
Asp700I	GAANNNNTTC	2 cut(s)	720, 744
AsuHPI	GGTGA	2 cut(s)	210, 252
Bbv12I	GWGCWC	1 cut(s)	70
BbvI	GCAGC	4 cut(s)	19, 52, 487, 818
BccI	CCATC	3 cut(s)	142, 661, 739
BcgI	CGANNNNNNTGC	2 cut(s)	548, 582
BciT130I	CCWGG	3 cut(s)	403, 423, 641
BciVI	GTATCC	1 cut(s)	126
BcoDI	GTCTC	2 cut(s)	64, 104
BfaI	CTAG	2 cut(s)	711, 735
BfmI	CTRYAG	2 cut(s)	234, 363
BfuAI	ACCTGC	2 cut(s)	130, 709
BfuI	GTATCC	1 cut(s)	126
BglII	AGATCT	2 cut(s)	238, 616
BisI	GCNGC	5 cut(s)	33, 41, 501, 804, 807
BlpI	GCTNAGC	1 cut(s)	672
BlsI	GCNGC	5 cut(s)	34, 42, 502, 805, 808
BmcAI	AGTACT	1 cut(s)	893
Bme1390I	CCNGG	3 cut(s)	403, 423, 641
BmiI	GGNNCC	4 cut(s)	400, 428, 624, 645
BmrFI	CCNGG	3 cut(s)	403, 423, 641
BmsI	GCATC	2 cut(s)	377, 556
BpmI	CTGGAG	1 cut(s)	84
Bpu1102I	GCTNAGC	1 cut(s)	672
BpuEI	CTTGAG	2 cut(s)	208, 292
BsaAI	YACGTR	1 cut(s)	818
BsaJI	CCNNGG	4 cut(s)	402, 422, 759, 789
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bse1I	ACTGG	1 cut(s)	86
Bse3DI	GCAATG	1 cut(s)	768
BseBI	CCWGG	3 cut(s)	403, 423, 641
BseDI	CCNNGG	4 cut(s)	402, 422, 759, 789
BseMI	GCAATG	1 cut(s)	768
BseMII	CTCAG	2 cut(s)	686, 704
BseNI	ACTGG	1 cut(s)	86
BseRI	GAGGAG	1 cut(s)	122
BseXI	GCAGC	4 cut(s)	19, 52, 487, 818
BshFI	GGCC	1 cut(s)	157
BsiHKAI	GWGCWC	1 cut(s)	70
BslFI	GGGAC	1 cut(s)	664
BsmAI	GTCTC	2 cut(s)	64, 104
BsmBI	CGTCTC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	664
BsmI	GAATGC	1 cut(s)	492
BsnI	GGCC	1 cut(s)	157
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp143I	GATC	3 cut(s)	26, 238, 616
Bsp1720I	GCTNAGC	1 cut(s)	672
BspACI	CCGC	1 cut(s)	804
BspANI	GGCC	1 cut(s)	157
BspCNI	CTCAG	2 cut(s)	685, 703
BspHI	TCATGA	2 cut(s)	265, 841
BspLI	GGNNCC	4 cut(s)	400, 428, 624, 645
BspMI	ACCTGC	2 cut(s)	130, 709
BsrDI	GCAATG	1 cut(s)	768
BsrI	ACTGG	1 cut(s)	86
BssECI	CCNNGG	4 cut(s)	402, 422, 759, 789
BssMI	GATC	3 cut(s)	26, 238, 616
Bst2UI	CCWGG	3 cut(s)	403, 423, 641
Bst4CI	ACNGT	2 cut(s)	191, 800
BstAPI	GCANNNNNTGC	1 cut(s)	374
BstBAI	YACGTR	1 cut(s)	818
BstDEI	CTNAG	3 cut(s)	44, 672, 690
BstKTI	GATC	3 cut(s)	29, 241, 619
BstMAI	GTCTC	2 cut(s)	64, 104
BstMBI	GATC	3 cut(s)	26, 238, 616
BstMWI	GCNNNNNNNGC	3 cut(s)	374, 800, 820
BstNI	CCWGG	3 cut(s)	403, 423, 641
BstSCI	CCNGG	3 cut(s)	401, 421, 639
BstSFI	CTRYAG	2 cut(s)	234, 363
BstV1I	GCAGC	4 cut(s)	19, 52, 487, 818
BstX2I	RGATCY	2 cut(s)	238, 616
BstXI	CCANNNNNNTGG	1 cut(s)	875
BstYI	RGATCY	2 cut(s)	238, 616
BsuI	GTATCC	1 cut(s)	126
BsuRI	GGCC	1 cut(s)	157
BtsIMutI	CAGTG	2 cut(s)	196, 805
BveI	ACCTGC	2 cut(s)	130, 709
CciI	TCATGA	2 cut(s)	265, 841
CsiI	ACCWGGT	1 cut(s)	639
Csp6I	GTAC	3 cut(s)	8, 408, 892
CviAII	CATG	3 cut(s)	52, 266, 842
CviQI	GTAC	3 cut(s)	8, 408, 892
DdeI	CTNAG	3 cut(s)	44, 672, 690
DpnI	GATC	3 cut(s)	28, 240, 618
DpnII	GATC	3 cut(s)	26, 238, 616
Eco147I	AGGCCT	1 cut(s)	157
Eco32I	GATATC	1 cut(s)	766
Eco57I	CTGAAG	2 cut(s)	330, 525
EcoRII	CCWGG	3 cut(s)	401, 421, 639
EcoRV	GATATC	1 cut(s)	766
Esp3I	CGTCTC	1 cut(s)	104
FaeI	CATG	3 cut(s)	55, 269, 845
FaiI	YATR	8 cut(s)	53, 209, 267, 323, 512, 637, 821, 843
FaqI	GGGAC	1 cut(s)	664
FatI	CATG	3 cut(s)	51, 265, 841
Fnu4HI	GCNGC	5 cut(s)	33, 41, 501, 804, 807
Fsp4HI	GCNGC	5 cut(s)	33, 41, 501, 804, 807
FspBI	CTAG	2 cut(s)	711, 735
GluI	GCNGC	5 cut(s)	33, 41, 501, 804, 807
GsuI	CTGGAG	1 cut(s)	84
HaeIII	GGCC	1 cut(s)	157
Hin1II	CATG	3 cut(s)	55, 269, 845
HincII	GTYRAC	2 cut(s)	601, 865
HindII	GTYRAC	2 cut(s)	601, 865
HindIII	AAGCTT	1 cut(s)	846
HinfI	GANTC	3 cut(s)	57, 228, 413
HpaI	GTTAAC	1 cut(s)	865
HphI	GGTGA	2 cut(s)	210, 252
Hpy166II	GTNNAC	2 cut(s)	601, 865
Hpy188I	TCNGA	4 cut(s)	24, 106, 573, 760
Hpy188III	TCNNGA	9 cut(s)	63, 225, 266, 279, 348, 620, 711, 735, 842
Hpy8I	GTNNAC	2 cut(s)	601, 865
HpyAV	CCTTC	5 cut(s)	101, 354, 602, 755, 795
HpyCH4III	ACNGT	2 cut(s)	191, 800
HpyCH4IV	ACGT	2 cut(s)	113, 817
HpyCH4V	TGCA	3 cut(s)	35, 127, 301
HpyF10VI	GCNNNNNNNGC	3 cut(s)	374, 800, 820
HpyF3I	CTNAG	3 cut(s)	44, 672, 690
HpySE526I	ACGT	2 cut(s)	113, 817
Hsp92II	CATG	3 cut(s)	55, 269, 845
KspAI	GTTAAC	1 cut(s)	865
Kzo9I	GATC	3 cut(s)	26, 238, 616
LmnI	GCTCC	2 cut(s)	65, 733
Lsp1109I	GCAGC	4 cut(s)	19, 52, 487, 818
LweI	GCATC	2 cut(s)	377, 556
MabI	ACCWGGT	1 cut(s)	639
MaeI	CTAG	2 cut(s)	711, 735
MaeII	ACGT	2 cut(s)	113, 817
MaeIII	GTNAC	6 cut(s)	47, 173, 203, 587, 610, 775
MalI	GATC	3 cut(s)	28, 240, 618
MboI	GATC	3 cut(s)	26, 238, 616
MboII	GAAGA	4 cut(s)	66, 233, 330, 518
MflI	RGATCY	2 cut(s)	238, 616
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	4 cut(s)	552, 580, 661, 910
MlyI	GAGTC	1 cut(s)	66
MmeI	TCCRAC	1 cut(s)	806
MnlI	CCTC	7 cut(s)	100, 109, 232, 273, 316, 754, 799
MroXI	GAANNNNTTC	2 cut(s)	720, 744
MseI	TTAA	2 cut(s)	179, 864
MspA1I	CMGCKG	1 cut(s)	32
MspR9I	CCNGG	3 cut(s)	403, 423, 641
Mva1269I	GAATGC	1 cut(s)	492
MvaI	CCWGG	3 cut(s)	403, 423, 641
MwoI	GCNNNNNNNGC	3 cut(s)	374, 800, 820
NdeII	GATC	3 cut(s)	26, 238, 616
NlaIII	CATG	3 cut(s)	55, 269, 845
NlaIV	GGNNCC	4 cut(s)	400, 428, 624, 645
NmeAIII	GCCGAG	1 cut(s)	770
NmuCI	GTSAC	4 cut(s)	47, 173, 203, 587
PagI	TCATGA	2 cut(s)	265, 841
PceI	AGGCCT	1 cut(s)	157
PcsI	WCGNNNNNNNCGW	1 cut(s)	110
PctI	GAATGC	1 cut(s)	492
PdmI	GAANNNNTTC	2 cut(s)	720, 744
PfeI	GAWTC	2 cut(s)	228, 413
PkrI	GCNGC	5 cut(s)	34, 42, 502, 805, 808
PleI	GAGTC	1 cut(s)	65
PpsI	GAGTC	1 cut(s)	65
Ppu21I	YACGTR	1 cut(s)	818
Psp6I	CCWGG	3 cut(s)	401, 421, 639
PspGI	CCWGG	3 cut(s)	401, 421, 639
PspN4I	GGNNCC	4 cut(s)	400, 428, 624, 645
PsuI	RGATCY	2 cut(s)	238, 616
PvuII	CAGCTG	1 cut(s)	32
RsaI	GTAC	3 cut(s)	9, 409, 893
RsaNI	GTAC	3 cut(s)	8, 408, 892
SaqAI	TTAA	2 cut(s)	179, 864
SatI	GCNGC	5 cut(s)	33, 41, 501, 804, 807
Sau3AI	GATC	3 cut(s)	26, 238, 616
ScaI	AGTACT	1 cut(s)	893
SchI	GAGTC	1 cut(s)	66
ScrFI	CCNGG	3 cut(s)	403, 423, 641
SduI	GDGCHC	1 cut(s)	70
SexAI	ACCWGGT	1 cut(s)	639
SfaNI	GCATC	2 cut(s)	377, 556
SfcI	CTRYAG	2 cut(s)	234, 363
SmlI	CTYRAG	2 cut(s)	223, 307
SmoI	CTYRAG	2 cut(s)	223, 307
Sse9I	AATT	4 cut(s)	552, 580, 661, 910
SseBI	AGGCCT	1 cut(s)	157
SsiI	CCGC	1 cut(s)	804
SspMI	CTAG	2 cut(s)	711, 735
StuI	AGGCCT	1 cut(s)	157
StyD4I	CCNGG	3 cut(s)	401, 421, 639
TaaI	ACNGT	2 cut(s)	191, 800
TaiI	ACGT	2 cut(s)	116, 820
TaqI	TCGA	1 cut(s)	146
TasI	AATT	4 cut(s)	552, 580, 661, 910
TatI	WGTACW	1 cut(s)	891
TauI	GCSGC	1 cut(s)	806
TfiI	GAWTC	2 cut(s)	228, 413
Tru1I	TTAA	2 cut(s)	179, 864
Tru9I	TTAA	2 cut(s)	179, 864
TscAI	CASTG	2 cut(s)	196, 805
TseFI	GTSAC	4 cut(s)	47, 173, 203, 587
TseI	GCWGC	4 cut(s)	32, 40, 500, 806
Tsp45I	GTSAC	4 cut(s)	47, 173, 203, 587
TspDTI	ATGAA	6 cut(s)	66, 204, 283, 696, 830, 858
TspRI	CASTG	2 cut(s)	196, 805
XapI	RAATTY	1 cut(s)	661
XbaI	TCTAGA	2 cut(s)	710, 734
XcmI	CCANNNNNNNNNTGG	1 cut(s)	822
XmnI	GAANNNNTTC	2 cut(s)	720, 744
XspI	CTAG	2 cut(s)	711, 735
ZrmI	AGTACT	1 cut(s)	893

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.