Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007621

Physical Location & Seq

Genomic Coordinates Forward (+)

29311166 .. 29312281

Gene Structure 1116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0184900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGAGGAATTAAGGTCTTTACTTCTCTCTGCTGAATTTGAACTTGAGTTGAAGCATAAAACTCACCAAGTGACACCCTTAAAAATAGTGGTTGCAAATAATAGCTCTATGTCATTCCTTGACTCTCATTTTGGAAGTTCAATATTTGTTATACCCTCTACTATTGTGCCCCAACGTGGTAAAAATCATATTGATTATAATAACACTTCTACATGTCATGTACCTGTTGTGGCCAAGTCCAATATCAGTGCTCTTACTAGTACTCCTACAAGTCTAGTTACTCAAATGGCTTGTCCACCACAGTCAGCTATTTTGTCAAATAATGTCAACATTGCTACTGCATACATGAGTAATACTATGGCATCGAATGGGAACTTTGCTATGCAATCTATGCCAAATAACAGATACATGATGGATTTTGTTTCTACACCTACTGGTCTCCTGATTCCCAACTCTGGCTCAAATTTGGTTACTTCATACACATCTACTGGTGCAACACAACAGCTTGGTGACTTTCATCATTCCCATGCAACTTATGCACAGCCACAAGTCAATTCTAATGGAAGAATCCAATATAATTGGGGATTTTCTCAACCCAATAGTAACTTCATTCAAGAAAGTGGTGGACTTCAGCAAAGCATTGGATTTCAATCTGGCATGGCTACTTCTAATGGTTATCAAGCTTCATTTAATACTAATGCAATGACGAATGGTGGAAATTGCTTTTCTCGTACTGGTTTGGTTAGGAATACTGCTCTGAGCGATTGTTCTCTAAAAGATTTGCACTTTACTGACCCTAGTTTTACTTGGATAGGGATTAGGCATGGAATGGAAGTCAAGGTACGATTGGATAGGTTTGTGGTCAATGATGTTTGGCCGGACTTATTTCCAAAATCTAGGGTGATCCATCTCAATCCAAACGAGTCGGATCACTTACCAATCCTTTTGGAAGTTAGGAAGTTGAGGGAAAAAAGGAGGAGAAGAAGGAAACAGTTTCGTTTCGAGGAGTTCTGGTTGAGGGAGGATAACTGCAAGGCGATGGTTGAGTCAGGTTGGCAGAGTGCCACAGGGGATGACATTTTTGTGAAAGTTGCAAATAAAATTGCAAATACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007275 GO:0007623 GO:0008150 GO:0009267 GO:0009314 GO:0009416 GO:0009555 GO:0009605 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0016036 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048511 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055063 GO:0055081 GO:0060255 GO:0065007 GO:0065008 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071496 GO:0072505 GO:0080090 GO:0098771 GO:0104004 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

371

Amino Acids

41.38

Weight (kDa)

8.94

Isoelectric Point (pI)

45.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28610
fragaria_vesca	FvH4_2g20730 FvH4_2g20730
malus_domestica	MD00G1060900.v1.1 MD05G1189400.v1.1
prunus_persica	Prupe.8G216800_v2.0.a1 Prupe.8G216800_v2.0.a1 Prupe.8G216800_v2.0.a1 Prupe.8G216800_v2.0.a1 Prupe.8G216800_v2.0.a1
pyrus_communis	pycom05g17450 pycom10g15330
rosa_chinensis	RchiOBHm_Chr6g0286911
rosa_laevigata	RLG00000012527
rosa_multiflora	Rmu_sc0002520.1_g000011
rosa_roxburghii	Rroxscaffold_7G00181810
rosa_rugosa	Rorug06G0184800 Rorug06G0184900 Rorug06G0185000
rosa_samantha	Rh6AG296700 Rh6BG301300 Rh6CG308800 Rh6DG292600
rosa_wichuraiana	Rw6G025600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	198
AclWI	GGATC	2 cut(s)	898, 936
AcoI	YGGCCR	2 cut(s)	231, 875
AcsI	RAATTY	2 cut(s)	35, 463
AcuI	CTGAAG	1 cut(s)	614
AdeI	CACNNNGTG	1 cut(s)	70
AfaI	GTAC	4 cut(s)	222, 262, 733, 843
AfiI	CCNNNNNNNGG	2 cut(s)	176, 455
AflIII	ACRYGT	1 cut(s)	212
AgsI	TTSAA	5 cut(s)	41, 52, 141, 614, 650
AhlI	ACTAGT	1 cut(s)	257
AjuI	GAANNNNNNNTTGG	2 cut(s)	590, 622
AluBI	AGCT	4 cut(s)	105, 308, 505, 683
AluI	AGCT	4 cut(s)	105, 308, 505, 683
Alw21I	GWGCWC	1 cut(s)	253
Alw26I	GTCTC	1 cut(s)	443
AlwI	GGATC	2 cut(s)	898, 936
AoxI	GGCC	2 cut(s)	231, 875
ApoI	RAATTY	2 cut(s)	35, 463
ArsI	GACNNNNNNTTYG	4 cut(s)	113, 145, 277, 309
AsuHPI	GGTGA	3 cut(s)	56, 521, 913
BaeGI	GKGCMC	1 cut(s)	171
BalI	TGGCCA	1 cut(s)	233
BarI	GAAGNNNNNNTAC	2 cut(s)	825, 857
Bbv12I	GWGCWC	1 cut(s)	253
BccI	CCATC	3 cut(s)	406, 915, 1033
BcoDI	GTCTC	1 cut(s)	443
BcuI	ACTAGT	1 cut(s)	257
BfaI	CTAG	4 cut(s)	258, 275, 798, 897
BmcAI	AGTACT	1 cut(s)	262
BmsI	GCATC	1 cut(s)	371
BpuEI	CTTGAG	1 cut(s)	65
BsaBI	GATNNNNATC	1 cut(s)	649
BsaI	GGTCTC	1 cut(s)	443
BsaXI	ACNNNNNCTCC	4 cut(s)	247, 277, 998, 1028
Bsc4I	CCNNNNNNNGG	2 cut(s)	176, 455
Bse1I	ACTGG	3 cut(s)	439, 493, 739
Bse3DI	GCAATG	2 cut(s)	330, 708
Bse8I	GATNNNNATC	1 cut(s)	649
BseGI	GGATG	1 cut(s)	1078
BseJI	GATNNNNATC	1 cut(s)	649
BseLI	CCNNNNNNNGG	2 cut(s)	176, 455
BseMI	GCAATG	2 cut(s)	330, 708
BseMII	CTCAG	1 cut(s)	749
BseNI	ACTGG	3 cut(s)	439, 493, 739
BseRI	GAGGAG	2 cut(s)	991, 1019
BseSI	GKGCMC	1 cut(s)	171
BshFI	GGCC	2 cut(s)	233, 877
BsiHKAI	GWGCWC	1 cut(s)	253
BsiSI	CCGG	1 cut(s)	878
BslI	CCNNNNNNNGG	2 cut(s)	176, 455
BsmAI	GTCTC	1 cut(s)	443
BsnI	GGCC	2 cut(s)	233, 877
Bso31I	GGTCTC	1 cut(s)	443
Bsp1286I	GDGCHC	2 cut(s)	171, 253
Bsp143I	GATC	2 cut(s)	903, 928
BspANI	GGCC	2 cut(s)	233, 877
BspCNI	CTCAG	1 cut(s)	750
BspPI	GGATC	2 cut(s)	898, 936
BspTNI	GGTCTC	1 cut(s)	443
BsrDI	GCAATG	2 cut(s)	330, 708
BsrI	ACTGG	3 cut(s)	439, 493, 739
BssMI	GATC	2 cut(s)	903, 928
Bst4CI	ACNGT	2 cut(s)	303, 993
BstAPI	GCANNNNNTGC	2 cut(s)	391, 536
BstDEI	CTNAG	1 cut(s)	758
BstF5I	GGATG	1 cut(s)	1078
BstKTI	GATC	2 cut(s)	906, 931
BstMAI	GTCTC	1 cut(s)	443
BstMBI	GATC	2 cut(s)	903, 928
BstMWI	GCNNNNNNNGC	2 cut(s)	391, 536
BstNSI	RCATGY	1 cut(s)	216
BstSLI	GKGCMC	1 cut(s)	171
BsuRI	GGCC	2 cut(s)	233, 877
BtgZI	GCGATG	1 cut(s)	1052
BtsCI	GGATG	1 cut(s)	1078
BtsIMutI	CAGTG	1 cut(s)	253
Csp6I	GTAC	4 cut(s)	221, 261, 732, 842
CviAII	CATG	8 cut(s)	213, 218, 346, 409, 527, 658, 824, 1113
CviQI	GTAC	4 cut(s)	221, 261, 732, 842
DdeI	CTNAG	1 cut(s)	758
DpnI	GATC	2 cut(s)	905, 930
DpnII	GATC	2 cut(s)	903, 928
DraIII	CACNNNGTG	1 cut(s)	70
EaeI	YGGCCR	2 cut(s)	231, 875
Eco31I	GGTCTC	1 cut(s)	443
Eco57I	CTGAAG	1 cut(s)	614
FaeI	CATG	8 cut(s)	216, 221, 349, 412, 530, 661, 827, 1116
FatI	CATG	8 cut(s)	212, 217, 345, 408, 526, 657, 823, 1112
FokI	GGATG	1 cut(s)	1085
FspBI	CTAG	4 cut(s)	258, 275, 798, 897
HaeIII	GGCC	2 cut(s)	233, 877
HapII	CCGG	1 cut(s)	878
Hin1II	CATG	8 cut(s)	216, 221, 349, 412, 530, 661, 827, 1116
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HindIII	AAGCTT	1 cut(s)	681
HinfI	GANTC	5 cut(s)	122, 445, 567, 923, 1046
HpaII	CCGG	1 cut(s)	878
HphI	GGTGA	3 cut(s)	56, 521, 913
Hpy166II	GTNNAC	3 cut(s)	296, 328, 626
Hpy188I	TCNGA	2 cut(s)	759, 928
Hpy188III	TCNNGA	2 cut(s)	442, 614
Hpy8I	GTNNAC	3 cut(s)	296, 328, 626
HpyAV	CCTTC	1 cut(s)	978
HpyCH4III	ACNGT	2 cut(s)	303, 993
HpyCH4IV	ACGT	1 cut(s)	175
HpyF10VI	GCNNNNNNNGC	2 cut(s)	391, 536
HpyF3I	CTNAG	1 cut(s)	758
HpySE526I	ACGT	1 cut(s)	175
Hsp92II	CATG	8 cut(s)	216, 221, 349, 412, 530, 661, 827, 1116
Kzo9I	GATC	2 cut(s)	903, 928
LweI	GCATC	1 cut(s)	371
MaeI	CTAG	4 cut(s)	258, 275, 798, 897
MaeII	ACGT	1 cut(s)	175
MaeIII	GTNAC	5 cut(s)	70, 277, 469, 509, 602
MalI	GATC	2 cut(s)	905, 930
MboI	GATC	2 cut(s)	903, 928
MboII	GAAGA	2 cut(s)	576, 993
MhlI	GDGCHC	2 cut(s)	171, 253
MlsI	TGGCCA	1 cut(s)	233
MluCI	AATT	7 cut(s)	8, 35, 463, 553, 577, 718, 1101
MluNI	TGGCCA	1 cut(s)	233
MlyI	GAGTC	3 cut(s)	116, 932, 1055
MmeI	TCCRAC	1 cut(s)	906
MnlI	CCTC	6 cut(s)	166, 957, 969, 997, 1011, 1015
Mox20I	TGGCCA	1 cut(s)	233
MscI	TGGCCA	1 cut(s)	233
MseI	TTAA	3 cut(s)	11, 80, 690
MslI	CAYNNNNRTG	2 cut(s)	525, 1082
Msp20I	TGGCCA	1 cut(s)	233
MspI	CCGG	1 cut(s)	878
MwoI	GCNNNNNNNGC	2 cut(s)	391, 536
NdeII	GATC	2 cut(s)	903, 928
NlaIII	CATG	8 cut(s)	216, 221, 349, 412, 530, 661, 827, 1116
NmuCI	GTSAC	2 cut(s)	70, 509
NspI	RCATGY	1 cut(s)	216
PciI	ACATGT	1 cut(s)	212
PfeI	GAWTC	2 cut(s)	445, 567
PleI	GAGTC	3 cut(s)	116, 931, 1054
PpsI	GAGTC	3 cut(s)	116, 931, 1054
PscI	ACATGT	1 cut(s)	212
PsiI	TTATAA	1 cut(s)	198
RsaI	GTAC	4 cut(s)	222, 262, 733, 843
RsaNI	GTAC	4 cut(s)	221, 261, 732, 842
RseI	CAYNNNNRTG	2 cut(s)	525, 1082
SaqAI	TTAA	3 cut(s)	11, 80, 690
Sau3AI	GATC	2 cut(s)	903, 928
ScaI	AGTACT	1 cut(s)	262
SchI	GAGTC	3 cut(s)	116, 932, 1055
SduI	GDGCHC	2 cut(s)	171, 253
SfaNI	GCATC	1 cut(s)	371
SmiMI	CAYNNNNRTG	2 cut(s)	525, 1082
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
SpeI	ACTAGT	1 cut(s)	257
Sse9I	AATT	7 cut(s)	8, 35, 463, 553, 577, 718, 1101
SspI	AATATT	1 cut(s)	144
SspMI	CTAG	4 cut(s)	258, 275, 798, 897
TaaI	ACNGT	2 cut(s)	303, 993
TaiI	ACGT	1 cut(s)	178
TaqI	TCGA	2 cut(s)	365, 1002
TasI	AATT	7 cut(s)	8, 35, 463, 553, 577, 718, 1101
TatI	WGTACW	1 cut(s)	260
TfiI	GAWTC	2 cut(s)	445, 567
Tru1I	TTAA	3 cut(s)	11, 80, 690
Tru9I	TTAA	3 cut(s)	11, 80, 690
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	2 cut(s)	70, 509
Tsp45I	GTSAC	2 cut(s)	70, 509
TspDTI	ATGAA	4 cut(s)	465, 506, 598, 675
TspRI	CASTG	1 cut(s)	253
XapI	RAATTY	2 cut(s)	35, 463
XceI	RCATGY	1 cut(s)	216
XspI	CTAG	4 cut(s)	258, 275, 798, 897
ZrmI	AGTACT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.