Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0007621

Physical Location & Seq

Genomic Coordinates Forward (+)

49031776 .. 49036346

Gene Structure 4571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG308800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGGAGGCACGCCCTGCCATTCGGAGATCAGCTGCAAAGCAGCTTAGTCACATGGGAGTCTCTGGAGCATTATCTTCATCTTTACCAGTCCTTCAACCCTCATCGGAGGAGACGTATCCCAAGTTGCAAGACACACAGCAGGTTTCGATGGAAAGGCCTGTGGCACAAGCAGGTCACTTAACATCCAACAGTGGCGTAGTTGGTCACATATTTTCATCACCCTCAAGATTCTCTACAGATCTTCACTACTCATCTGTTTCACCTCGTGAGAAGCAGTCAAGAAATAATCCTTTCATTTTGCAATCCTTAAGTTCTGTGTCTATGCCATTACCACATTCTTCTCCTTCAGGAGTTTTTCAATCTACAGCATCTTGTGCCTATTCCAAAGAAAACAATGGTTCCTGGGGTACAGATTCTCTGCCAGGGTTCCTTGATTTTCCTGTAAATACCCCTGTTGAGAATAGTCAAATAGAGAGCAGTAGTTGTAGTGGCATTCTGGCTGCTGAAGATATAAGTAAGCAAAATGATTGGCAGGAGTGGGCAAACCAGCTAATTACCGATGATGATGCTCTGACTTCTAACTGGAGTGACCTTCTCGTTGACAACAATGTTACAGATCTGGAACCAAAGATGACATACCAGGTTCCCAAACCATCTTTGAATTTTTCAGCTCAGCAGTCCCAAGTTTCTCAGCAACAACCTGCTTCATCTAGAGAAATCATTCCTGCTCCATCTAGAGAAATCATTCCTGCTCCATCTAGAGAAATCCTTCCTGTTCAATCCGAGGATATCATTGCTGTTACTACTCCTTCCTCGGCTAACAGTGCCGCAGCGAAGCCACGTATGCGTTGGACACCAGAACTTCATGAAGCTTTTGTGGAAGCTGTTAACCAACTCGGTGGTAGTGAAAGAGCAACTCCTAAGGGTGTGCTGAAGCTCATGAAAGTGGAAGGCTTGACTATCTATCATGTGAAAAGTCACTTGCAGAAATATAGGACCGCTAGATACAGACCAGAGTCATCAGAAGGATCCTTGGAGAAAAAATTGACTCCTATCGAAGAAATGACATCTCTAGACTTGAAAACGGGTATCGAGATCACTGAAGCTCTGCGACTGCAGATGGAAGTTCAGAAGCGGCTGCATGAACAGCTTGAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007275 GO:0007623 GO:0008150 GO:0009267 GO:0009314 GO:0009416 GO:0009555 GO:0009605 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0016036 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048511 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055063 GO:0055081 GO:0060255 GO:0065007 GO:0065008 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071496 GO:0072505 GO:0080090 GO:0098771 GO:0104004 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

386

Amino Acids

42.41

Weight (kDa)

5.57

Isoelectric Point (pI)

70.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	281 - 332	6.8e-10	Myb-like DNA-binding domain
Myb_CC_LHEQLE	PF14379	364 - 386	7.4e-10	MYB-CC type transfactor, LHEQLE motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28610
fragaria_vesca	FvH4_2g20730 FvH4_2g20730
malus_domestica	MD00G1060900.v1.1 MD05G1189400.v1.1
prunus_persica	Prupe.8G216800_v2.0.a1 Prupe.8G216800_v2.0.a1 Prupe.8G216800_v2.0.a1 Prupe.8G216800_v2.0.a1 Prupe.8G216800_v2.0.a1
pyrus_communis	pycom05g17450 pycom10g15330
rosa_chinensis	RchiOBHm_Chr6g0286911
rosa_laevigata	RLG00000012527
rosa_multiflora	Rmu_sc0002520.1_g000011
rosa_roxburghii	Rroxscaffold_7G00181810
rosa_rugosa	Rorug06G0184800 Rorug06G0184900 Rorug06G0185000
rosa_samantha	Rh6AG296700 Rh6BG301300 Rh6CG308800 Rh6DG292600
rosa_wichuraiana	Rw6G025600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	3 cut(s)	130, 161, 709
AciI	CCGC	3 cut(s)	828, 999, 1135
AclWI	GGATC	2 cut(s)	1023, 1036
AcsI	RAATTY	1 cut(s)	661
AcuI	CTGAAG	4 cut(s)	330, 525, 953, 1122
AdeI	CACNNNGTG	1 cut(s)	266
AfaI	GTAC	1 cut(s)	409
AflII	CTTAAG	1 cut(s)	307
AgsI	TTSAA	5 cut(s)	95, 359, 661, 779, 1081
AjnI	CCWGG	3 cut(s)	401, 421, 639
AluBI	AGCT	9 cut(s)	32, 43, 550, 671, 872, 884, 937, 1106, 1150
AluI	AGCT	9 cut(s)	32, 43, 550, 671, 872, 884, 937, 1106, 1150
Alw26I	GTCTC	2 cut(s)	64, 104
AlwI	GGATC	2 cut(s)	1023, 1036
AoxI	GGCC	1 cut(s)	155
ApeKI	GCWGC	5 cut(s)	32, 40, 500, 830, 1138
ApoI	RAATTY	1 cut(s)	661
Asp700I	GAANNNNTTC	3 cut(s)	720, 744, 768
AspS9I	GGNCC	1 cut(s)	996
AsuHPI	GGTGA	2 cut(s)	210, 252
AvaII	GGWCC	1 cut(s)	996
AxyI	CCTNAGG	1 cut(s)	921
BamHI	GGATCC	1 cut(s)	1028
BauI	CACGAG	1 cut(s)	264
BbvI	GCAGC	5 cut(s)	19, 52, 487, 842, 1125
BccI	CCATC	5 cut(s)	142, 661, 739, 763, 1114
BcgI	CGANNNNNNTGC	2 cut(s)	548, 582
BciT130I	CCWGG	3 cut(s)	403, 423, 641
BciVI	GTATCC	1 cut(s)	126
BcoDI	GTCTC	2 cut(s)	64, 104
BfaI	CTAG	5 cut(s)	711, 735, 759, 1002, 1073
BfmI	CTRYAG	3 cut(s)	234, 363, 1115
BfrI	CTTAAG	1 cut(s)	307
BfuAI	ACCTGC	3 cut(s)	130, 161, 709
BfuI	GTATCC	1 cut(s)	126
BglII	AGATCT	2 cut(s)	238, 616
BisI	GCNGC	7 cut(s)	33, 41, 501, 828, 831, 1136, 1139
BlpI	GCTNAGC	1 cut(s)	672
BlsI	GCNGC	7 cut(s)	34, 42, 502, 829, 832, 1137, 1140
Bme1390I	CCNGG	3 cut(s)	403, 423, 641
Bme18I	GGWCC	1 cut(s)	996
BmgT120I	GGNCC	1 cut(s)	996
BmiI	GGNNCC	5 cut(s)	400, 428, 624, 645, 1030
BmrFI	CCNGG	3 cut(s)	403, 423, 641
BmsI	GCATC	2 cut(s)	377, 556
BoxI	GACNNNNGTC	1 cut(s)	1015
BpmI	CTGGAG	2 cut(s)	84, 604
Bpu1102I	GCTNAGC	1 cut(s)	672
BpuEI	CTTGAG	1 cut(s)	208
BsaAI	YACGTR	1 cut(s)	842
BsaJI	CCNNGG	5 cut(s)	402, 422, 783, 813, 1032
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bse1I	ACTGG	2 cut(s)	86, 587
Bse21I	CCTNAGG	1 cut(s)	921
Bse3DI	GCAATG	1 cut(s)	792
BseBI	CCWGG	3 cut(s)	403, 423, 641
BseDI	CCNNGG	5 cut(s)	402, 422, 783, 813, 1032
BseGI	GGATG	1 cut(s)	182
BseMI	GCAATG	1 cut(s)	792
BseMII	CTCAG	2 cut(s)	686, 704
BseNI	ACTGG	2 cut(s)	86, 587
BseRI	GAGGAG	1 cut(s)	122
BseXI	GCAGC	5 cut(s)	19, 52, 487, 842, 1125
BshFI	GGCC	1 cut(s)	157
BslFI	GGGAC	1 cut(s)	664
BsmAI	GTCTC	2 cut(s)	64, 104
BsmBI	CGTCTC	1 cut(s)	104
BsmFI	GGGAC	1 cut(s)	664
BsmI	GAATGC	1 cut(s)	492
BsnI	GGCC	1 cut(s)	157
Bsp143I	GATC	5 cut(s)	26, 238, 616, 1028, 1095
Bsp1720I	GCTNAGC	1 cut(s)	672
BspACI	CCGC	3 cut(s)	828, 999, 1135
BspANI	GGCC	1 cut(s)	157
BspCNI	CTCAG	2 cut(s)	685, 703
BspHI	TCATGA	2 cut(s)	865, 939
BspLI	GGNNCC	5 cut(s)	400, 428, 624, 645, 1030
BspMAI	CTGCAG	1 cut(s)	1119
BspMI	ACCTGC	3 cut(s)	130, 161, 709
BspPI	GGATC	2 cut(s)	1023, 1036
BspTI	CTTAAG	1 cut(s)	307
BsrDI	GCAATG	1 cut(s)	792
BsrI	ACTGG	2 cut(s)	86, 587
BssECI	CCNNGG	5 cut(s)	402, 422, 783, 813, 1032
BssMI	GATC	5 cut(s)	26, 238, 616, 1028, 1095
BssSI	CACGAG	1 cut(s)	264
BssT1I	CCWWGG	1 cut(s)	1032
Bst2BI	CACGAG	1 cut(s)	264
Bst2UI	CCWGG	3 cut(s)	403, 423, 641
Bst4CI	ACNGT	2 cut(s)	191, 824
BstAFI	CTTAAG	1 cut(s)	307
BstAPI	GCANNNNNTGC	2 cut(s)	14, 374
BstBAI	YACGTR	1 cut(s)	842
BstC8I	GCNNGC	1 cut(s)	10
BstDEI	CTNAG	4 cut(s)	44, 672, 690, 921
BstF5I	GGATG	1 cut(s)	182
BstKTI	GATC	5 cut(s)	29, 241, 619, 1031, 1098
BstMAI	GTCTC	2 cut(s)	64, 104
BstMBI	GATC	5 cut(s)	26, 238, 616, 1028, 1095
BstMWI	GCNNNNNNNGC	5 cut(s)	14, 374, 824, 844, 1147
BstNI	CCWGG	3 cut(s)	403, 423, 641
BstPAI	GACNNNNGTC	1 cut(s)	1015
BstSCI	CCNGG	3 cut(s)	401, 421, 639
BstSFI	CTRYAG	3 cut(s)	234, 363, 1115
BstV1I	GCAGC	5 cut(s)	19, 52, 487, 842, 1125
BstX2I	RGATCY	3 cut(s)	238, 616, 1028
BstXI	CCANNNNNNTGG	1 cut(s)	899
BstYI	RGATCY	3 cut(s)	238, 616, 1028
Bsu36I	CCTNAGG	1 cut(s)	921
BsuI	GTATCC	1 cut(s)	126
BsuRI	GGCC	1 cut(s)	157
BtsCI	GGATG	1 cut(s)	182
BtsIMutI	CAGTG	3 cut(s)	196, 829, 1098
BveI	ACCTGC	3 cut(s)	130, 161, 709
Cac8I	GCNNGC	1 cut(s)	10
CciI	TCATGA	2 cut(s)	865, 939
Cfr13I	GGNCC	1 cut(s)	996
CsiI	ACCWGGT	1 cut(s)	639
Csp6I	GTAC	1 cut(s)	408
CviAII	CATG	5 cut(s)	52, 866, 940, 968, 1142
CviQI	GTAC	1 cut(s)	408
DdeI	CTNAG	4 cut(s)	44, 672, 690, 921
DpnI	GATC	5 cut(s)	28, 240, 618, 1030, 1097
DpnII	GATC	5 cut(s)	26, 238, 616, 1028, 1095
DraIII	CACNNNGTG	1 cut(s)	266
Eco130I	CCWWGG	1 cut(s)	1032
Eco147I	AGGCCT	1 cut(s)	157
Eco32I	GATATC	1 cut(s)	790
Eco47I	GGWCC	1 cut(s)	996
Eco57I	CTGAAG	4 cut(s)	330, 525, 953, 1122
Eco81I	CCTNAGG	1 cut(s)	921
EcoRII	CCWGG	3 cut(s)	401, 421, 639
EcoRV	GATATC	1 cut(s)	790
EcoT14I	CCWWGG	1 cut(s)	1032
ErhI	CCWWGG	1 cut(s)	1032
Esp3I	CGTCTC	1 cut(s)	104
FaeI	CATG	5 cut(s)	55, 869, 943, 971, 1145
FaqI	GGGAC	1 cut(s)	664
FatI	CATG	5 cut(s)	51, 865, 939, 967, 1141
Fnu4HI	GCNGC	7 cut(s)	33, 41, 501, 828, 831, 1136, 1139
FokI	GGATG	1 cut(s)	169
Fsp4HI	GCNGC	7 cut(s)	33, 41, 501, 828, 831, 1136, 1139
FspBI	CTAG	5 cut(s)	711, 735, 759, 1002, 1073
GluI	GCNGC	7 cut(s)	33, 41, 501, 828, 831, 1136, 1139
GsuI	CTGGAG	2 cut(s)	84, 604
HaeIII	GGCC	1 cut(s)	157
Hin1II	CATG	5 cut(s)	55, 869, 943, 971, 1145
HincII	GTYRAC	2 cut(s)	601, 889
HindII	GTYRAC	2 cut(s)	601, 889
HindIII	AAGCTT	1 cut(s)	870
HinfI	GANTC	5 cut(s)	57, 228, 413, 1016, 1048
HpaI	GTTAAC	1 cut(s)	889
HphI	GGTGA	2 cut(s)	210, 252
Hpy166II	GTNNAC	2 cut(s)	601, 889
Hpy188I	TCNGA	6 cut(s)	24, 106, 573, 784, 1024, 1131
Hpy8I	GTNNAC	2 cut(s)	601, 889
HpyAV	CCTTC	7 cut(s)	101, 354, 602, 779, 819, 944, 1019
HpyCH4III	ACNGT	2 cut(s)	191, 824
HpyCH4IV	ACGT	2 cut(s)	113, 841
HpyCH4V	TGCA	6 cut(s)	35, 127, 301, 985, 1117, 1141
HpyF10VI	GCNNNNNNNGC	5 cut(s)	14, 374, 824, 844, 1147
HpyF3I	CTNAG	4 cut(s)	44, 672, 690, 921
HpySE526I	ACGT	2 cut(s)	113, 841
Hsp92II	CATG	5 cut(s)	55, 869, 943, 971, 1145
KspAI	GTTAAC	1 cut(s)	889
Kzo9I	GATC	5 cut(s)	26, 238, 616, 1028, 1095
LmnI	GCTCC	3 cut(s)	65, 733, 757
Lsp1109I	GCAGC	5 cut(s)	19, 52, 487, 842, 1125
LweI	GCATC	2 cut(s)	377, 556
MabI	ACCWGGT	1 cut(s)	639
MaeI	CTAG	5 cut(s)	711, 735, 759, 1002, 1073
MaeII	ACGT	2 cut(s)	113, 841
MaeIII	GTNAC	7 cut(s)	47, 173, 203, 587, 610, 799, 977
MalI	GATC	5 cut(s)	28, 240, 618, 1030, 1097
MboI	GATC	5 cut(s)	26, 238, 616, 1028, 1095
MboII	GAAGA	5 cut(s)	66, 233, 330, 518, 1070
MflI	RGATCY	3 cut(s)	238, 616, 1028
MluCI	AATT	3 cut(s)	552, 661, 1043
MlyI	GAGTC	3 cut(s)	66, 1025, 1042
MmeI	TCCRAC	2 cut(s)	210, 830
MnlI	CCTC	7 cut(s)	100, 109, 232, 273, 778, 823, 1147
MroXI	GAANNNNTTC	3 cut(s)	720, 744, 768
MseI	TTAA	3 cut(s)	179, 308, 888
MslI	CAYNNNNRTG	1 cut(s)	944
MspA1I	CMGCKG	1 cut(s)	32
MspCI	CTTAAG	1 cut(s)	307
MspR9I	CCNGG	3 cut(s)	403, 423, 641
Mva1269I	GAATGC	1 cut(s)	492
MvaI	CCWGG	3 cut(s)	403, 423, 641
MwoI	GCNNNNNNNGC	5 cut(s)	14, 374, 824, 844, 1147
NdeII	GATC	5 cut(s)	26, 238, 616, 1028, 1095
NlaIII	CATG	5 cut(s)	55, 869, 943, 971, 1145
NlaIV	GGNNCC	5 cut(s)	400, 428, 624, 645, 1030
NmeAIII	GCCGAG	1 cut(s)	794
NmuCI	GTSAC	5 cut(s)	47, 173, 203, 587, 977
PagI	TCATGA	2 cut(s)	865, 939
PceI	AGGCCT	1 cut(s)	157
PcsI	WCGNNNNNNNCGW	1 cut(s)	110
PctI	GAATGC	1 cut(s)	492
PdmI	GAANNNNTTC	3 cut(s)	720, 744, 768
PfeI	GAWTC	2 cut(s)	228, 413
PkrI	GCNGC	7 cut(s)	34, 42, 502, 829, 832, 1137, 1140
PleI	GAGTC	3 cut(s)	65, 1024, 1042
PpsI	GAGTC	3 cut(s)	65, 1024, 1042
Ppu21I	YACGTR	1 cut(s)	842
PshAI	GACNNNNGTC	1 cut(s)	1015
Psp6I	CCWGG	3 cut(s)	401, 421, 639
PspGI	CCWGG	3 cut(s)	401, 421, 639
PspN4I	GGNNCC	5 cut(s)	400, 428, 624, 645, 1030
PspPI	GGNCC	1 cut(s)	996
PstI	CTGCAG	1 cut(s)	1119
PsuI	RGATCY	3 cut(s)	238, 616, 1028
PvuII	CAGCTG	1 cut(s)	32
RsaI	GTAC	1 cut(s)	409
RsaNI	GTAC	1 cut(s)	408
RseI	CAYNNNNRTG	1 cut(s)	944
SaqAI	TTAA	3 cut(s)	179, 308, 888
SatI	GCNGC	7 cut(s)	33, 41, 501, 828, 831, 1136, 1139
Sau3AI	GATC	5 cut(s)	26, 238, 616, 1028, 1095
Sau96I	GGNCC	1 cut(s)	996
SchI	GAGTC	3 cut(s)	66, 1025, 1042
ScrFI	CCNGG	3 cut(s)	403, 423, 641
SexAI	ACCWGGT	1 cut(s)	639
SfaNI	GCATC	2 cut(s)	377, 556
SfcI	CTRYAG	3 cut(s)	234, 363, 1115
SinI	GGWCC	1 cut(s)	996
SmiMI	CAYNNNNRTG	1 cut(s)	944
SmlI	CTYRAG	3 cut(s)	223, 307, 1151
SmoI	CTYRAG	3 cut(s)	223, 307, 1151
Sse9I	AATT	3 cut(s)	552, 661, 1043
SseBI	AGGCCT	1 cut(s)	157
SsiI	CCGC	3 cut(s)	828, 999, 1135
SspMI	CTAG	5 cut(s)	711, 735, 759, 1002, 1073
StuI	AGGCCT	1 cut(s)	157
StyD4I	CCNGG	3 cut(s)	401, 421, 639
StyI	CCWWGG	1 cut(s)	1032
TaaI	ACNGT	2 cut(s)	191, 824
TaiI	ACGT	2 cut(s)	116, 844
TaqI	TCGA	3 cut(s)	146, 1056, 1092
TasI	AATT	3 cut(s)	552, 661, 1043
TauI	GCSGC	2 cut(s)	830, 1138
TfiI	GAWTC	2 cut(s)	228, 413
Tru1I	TTAA	3 cut(s)	179, 308, 888
Tru9I	TTAA	3 cut(s)	179, 308, 888
TscAI	CASTG	3 cut(s)	196, 829, 1105
TseFI	GTSAC	5 cut(s)	47, 173, 203, 587, 977
TseI	GCWGC	5 cut(s)	32, 40, 500, 830, 1138
Tsp45I	GTSAC	5 cut(s)	47, 173, 203, 587, 977
TspDTI	ATGAA	8 cut(s)	66, 204, 283, 696, 854, 882, 956, 1158
TspRI	CASTG	3 cut(s)	196, 829, 1105
Vha464I	CTTAAG	1 cut(s)	307
VpaK11BI	GGWCC	1 cut(s)	996
XapI	RAATTY	1 cut(s)	661
XbaI	TCTAGA	4 cut(s)	710, 734, 758, 1072
XcmI	CCANNNNNNNNNTGG	1 cut(s)	846
XmnI	GAANNNNTTC	3 cut(s)	720, 744, 768
XspI	CTAG	5 cut(s)	711, 735, 759, 1002, 1073

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.