pycom10g15330
MYB Family

Protein PHR1-LIKE 1-like isoform

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
18595101 .. 18598648
3548 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g15330.6

Sequence Viewer

Length: 1431 bp
ATGGGGGTCTCTGCAGCAATGTCTTCATCCTTACCAGTCCTTCCAACCTCTTTGGAAGAGACATATCCCAAGTTGCCAGACTCCCAACAGGTTTCCATGGAAAGAGAACTTATGACAAGGCCTGTTGGGCATGCTGGTCACTTAACCTCCAACAGTGGAGTAGTCGGTCACCTATATTCATCATCATCAGGATTCTCAACAGATCTTCACTACTCAGCTCTTTCACCTCATGAAAGACAGTCAAAAAACTCTCCTTTCATTTCTCAGAGTTCTGCAGCTTTGCCATTTCCTCATTCTCCTCATTCAGGATTTCTTCAGTCAACAGAATCTTGTCCTTATCCCAAAGAAAACAGTGGTTCCTGGTGTACAGATTCACTGCCAGGTTTCCTTCATTTTCCTGTCAATAGCCATGTCGAGAATAGTCAAATAGAGAGCAGTAGTTGCACTGGGATAATGACTGCTGATGAATTTGTTAAGCGAAATGATTGGCAGGATTGGGCAGATCAGCTAATTACTGATGATGATGCTTTAACTTCTAACTGGAATGAGCTTCTTGATGACAATAACGTAACAGATCTGGAACAAAAGATGAAATACCAGGCTCCCCAACCGTCTTCAACTTTTTCGGCTGAGCAGTCCCAAGTTCATCAGCAACAACCTGCTTCATCTGGGGAAATCATTCCTGCTCCATCTAGGGAAATCATTTCTGTTCCTGCTACTTCCTCAGCTAATAGTGCCTCTGCCAAGGCGCGCATGCGTTGGACGCCTGAACTTCATGAGGCCTTTGTGGAGGCTGTTAACCAACTTGGTGGTAGTGAAAGAGCAACTCCTAAGGGTGTGCTAAAGCTAATGAAAGTTGAAGGCTTGACCATCTATCATGTGAAAAGTCACTTGCAGAAATATAGGACTGCTAGATACATACCAGAGTCATCCGAAGGTGCCTCGGACAAGAAATTGACTTCAATTGAAGAAATGACGTCTCTTGACTTGAAAACTGGTATCGAGATCACTGAAGCTCTGCGACTGCAGATGGAAGTTCAGAAGCGACTGCACGAACAGCTTGAGATTCAAAGAAATCTGCAGTTACGAATAGAAGAACAAGGGAAGTATCTTCAAATGATGTTTGAGAAGCAATGCAAGTCGGGCATTGACACGCTGAAGCCATCATCATCCAATTTGGACGACCCCTCCCCTCAGCCTTCAGATGCAATGCAAGTTTGTCCCGACAAAAGTGAACTGGATTCCTCCAAGTTGGACCAGGGCGAGACTGAAACTGATCCGGTTAAAGCCAACTCCGCATCATCAGGTGGTTCACTGGAACCAGAAGGGAAGCAGAAGTCGCCTGAAGCGGAAGCTCTTTCTGAGAATCCGGAGCCAGATGGTGGTGTCTCCAGTCCCCAACCTCCAAAGCGTGCCAAAATCAAAGAATAG

Protein Analysis

477

Amino Acids

52.15

Weight (kDa)

5.07

Isoelectric Point (pI)

68.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 980
Acc36I ACCTGC 1 cut(s) 667
AccB1I GGYRCC 1 cut(s) 938
AccB7I CCANNNNNTGG 1 cut(s) 1382
AccII CGCG 1 cut(s) 751
AccIII TCCGGA 1 cut(s) 1369
AciI CCGC 2 cut(s) 1296, 1349
AclWI GGATC 1 cut(s) 1271
AcsI RAATTY 1 cut(s) 467
AcuI CTGAAG 5 cut(s) 299, 1032, 1178, 1185, 1365
AcyI GRCGYC 2 cut(s) 764, 977
AfaI GTAC 1 cut(s) 367
AfiI CCNNNNNNNGG 2 cut(s) 305, 1382
AgsI TTSAA 7 cut(s) 618, 860, 963, 968, 991, 1070, 1115
AjnI CCWGG 4 cut(s) 359, 379, 597, 1257
AluBI AGCT 9 cut(s) 218, 278, 508, 550, 728, 847, 1016, 1060, 1355
AluI AGCT 9 cut(s) 218, 278, 508, 550, 728, 847, 1016, 1060, 1355
Alw26I GTCTC 5 cut(s) 13, 53, 984, 1259, 1393
AlwI GGATC 1 cut(s) 1271
Aor13HI TCCGGA 1 cut(s) 1369
AoxI GGCC 2 cut(s) 119, 780
ApeKI GCWGC 2 cut(s) 14, 275
ApoI RAATTY 1 cut(s) 467
Asp700I GAANNNNTTC 1 cut(s) 678
AspLEI GCGC 2 cut(s) 751, 753
AspS9I GGNCC 1 cut(s) 1255
AsuHPI GGTGA 2 cut(s) 161, 216
AvaII GGWCC 1 cut(s) 1255
AxyI CCTNAGG 1 cut(s) 831
BanI GGYRCC 1 cut(s) 938
BbsI GAAGAC 2 cut(s) 15, 606
BbvCI CCTCAGC 2 cut(s) 724, 1194
BbvI GCAGC 2 cut(s) 26, 287
BccI CCATC 5 cut(s) 697, 878, 1024, 1171, 1373
BciT130I CCWGG 4 cut(s) 361, 381, 599, 1259
BcoDI GTCTC 5 cut(s) 13, 53, 984, 1259, 1393
BfaI CTAG 2 cut(s) 693, 912
BfmI CTRYAG 4 cut(s) 12, 273, 1025, 1079
BfuAI ACCTGC 1 cut(s) 667
BglI GCCNNNNNGGC 1 cut(s) 127
BglII AGATCT 2 cut(s) 202, 574
BisI GCNGC 2 cut(s) 15, 276
BlpI GCTNAGC 1 cut(s) 630
BlsI GCNGC 2 cut(s) 16, 277
Bme1390I CCNGG 4 cut(s) 361, 381, 599, 1259
Bme18I GGWCC 1 cut(s) 1255
BmgT120I GGNCC 1 cut(s) 1255
BmiI GGNNCC 5 cut(s) 358, 603, 940, 1320, 1374
BmrFI CCNGG 4 cut(s) 361, 381, 599, 1259
BmrI ACTGGG 1 cut(s) 456
BmsI GCATC 3 cut(s) 514, 1195, 1307
BmuI ACTGGG 1 cut(s) 456
BpiI GAAGAC 2 cut(s) 15, 606
BpmI CTGGAG 1 cut(s) 1375
Bpu10I CCTNAGC 2 cut(s) 724, 1194
Bpu1102I GCTNAGC 1 cut(s) 630
BpuEI CTTGAG 1 cut(s) 1082
BsaHI GRCGYC 2 cut(s) 764, 977
BsaI GGTCTC 1 cut(s) 13
BsaJI CCNNGG 4 cut(s) 96, 744, 942, 1258
BsaWI WCCGGW 2 cut(s) 1279, 1369
BsaXI ACNNNNNCTCC 4 cut(s) 131, 161, 1172, 1202
Bsc4I CCNNNNNNNGG 2 cut(s) 305, 1382
Bse1I ACTGG 7 cut(s) 35, 451, 545, 1000, 1242, 1320, 1392
Bse21I CCTNAGG 1 cut(s) 831
Bse3DI GCAATG 3 cut(s) 24, 1139, 1215
BseAI TCCGGA 1 cut(s) 1369
BseBI CCWGG 4 cut(s) 361, 381, 599, 1259
BseDI CCNNGG 4 cut(s) 96, 744, 942, 1258
BseGI GGATG 3 cut(s) 26, 929, 1169
BseLI CCNNNNNNNGG 2 cut(s) 305, 1382
BseMI GCAATG 3 cut(s) 24, 1139, 1215
BseMII CTCAG 6 cut(s) 228, 278, 621, 738, 1208, 1353
BseNI ACTGG 7 cut(s) 35, 451, 545, 1000, 1242, 1320, 1392
BsePI GCGCGC 1 cut(s) 749
BseRI GAGGAG 1 cut(s) 288
BseXI GCAGC 2 cut(s) 26, 287
BsgI GTGCAG 1 cut(s) 1034
Bsh1236I CGCG 1 cut(s) 751
BshFI GGCC 2 cut(s) 121, 782
BshNI GGYRCC 1 cut(s) 938
BsiSI CCGG 2 cut(s) 1280, 1370
BslFI GGGAC 3 cut(s) 622, 1206, 1380
BslI CCNNNNNNNGG 2 cut(s) 305, 1382
BsmAI GTCTC 5 cut(s) 13, 53, 984, 1259, 1393
BsmBI CGTCTC 1 cut(s) 984
BsmFI GGGAC 3 cut(s) 622, 1206, 1380
BsnI GGCC 2 cut(s) 121, 782
Bso31I GGTCTC 1 cut(s) 13
Bsp13I TCCGGA 1 cut(s) 1369
Bsp1407I TGTACA 1 cut(s) 365
Bsp143I GATC 5 cut(s) 202, 502, 574, 1005, 1276
Bsp1720I GCTNAGC 1 cut(s) 630
Bsp19I CCATGG 1 cut(s) 96
BspACI CCGC 2 cut(s) 1296, 1349
BspANI GGCC 2 cut(s) 121, 782
BspCNI CTCAG 6 cut(s) 227, 277, 622, 737, 1207, 1354
BspEI TCCGGA 1 cut(s) 1369
BspFNI CGCG 1 cut(s) 751
BspHI TCATGA 2 cut(s) 229, 775
BspLI GGNNCC 5 cut(s) 358, 603, 940, 1320, 1374
BspMAI CTGCAG 4 cut(s) 16, 277, 1029, 1083
BspMI ACCTGC 1 cut(s) 667
BspPI GGATC 1 cut(s) 1271
BspT107I GGYRCC 1 cut(s) 938
BspTNI GGTCTC 1 cut(s) 13
BsrDI GCAATG 3 cut(s) 24, 1139, 1215
BsrGI TGTACA 1 cut(s) 365
BsrI ACTGG 7 cut(s) 35, 451, 545, 1000, 1242, 1320, 1392
BssECI CCNNGG 4 cut(s) 96, 744, 942, 1258
BssHII GCGCGC 1 cut(s) 749
BssMI GATC 5 cut(s) 202, 502, 574, 1005, 1276
BssNI GRCGYC 2 cut(s) 764, 977
BssT1I CCWWGG 2 cut(s) 96, 744
Bst2UI CCWGG 4 cut(s) 361, 381, 599, 1259
Bst4CI ACNGT 4 cut(s) 155, 240, 353, 612
Bst6I CTCTTC 1 cut(s) 51
BstACI GRCGYC 2 cut(s) 764, 977
BstAPI GCANNNNNTGC 1 cut(s) 441
BstAUI TGTACA 1 cut(s) 365
BstC8I GCNNGC 4 cut(s) 132, 751, 755, 1413
BstDEI CTNAG 7 cut(s) 214, 264, 630, 724, 831, 1194, 1362
BstDSI CCRYGG 1 cut(s) 96
BstEII GGTNACC 1 cut(s) 167
BstENI CCTNNNNNAGG 1 cut(s) 303
BstF5I GGATG 3 cut(s) 26, 929, 1169
BstFNI CGCG 1 cut(s) 751
BstHHI GCGC 2 cut(s) 751, 753
BstKTI GATC 5 cut(s) 205, 505, 577, 1008, 1279
BstMAI GTCTC 5 cut(s) 13, 53, 984, 1259, 1393
BstMBI GATC 5 cut(s) 202, 502, 574, 1005, 1276
BstMWI GCNNNNNNNGC 8 cut(s) 127, 441, 734, 763, 1057, 1143, 1295, 1339
BstNI CCWGG 4 cut(s) 361, 381, 599, 1259
BstNSI RCATGY 2 cut(s) 134, 757
BstPI GGTNACC 1 cut(s) 167
BstSCI CCNGG 4 cut(s) 359, 379, 597, 1257
BstSFI CTRYAG 4 cut(s) 12, 273, 1025, 1079
BstUI CGCG 1 cut(s) 751
BstV1I GCAGC 2 cut(s) 26, 287
BstV2I GAAGAC 2 cut(s) 15, 606
BstX2I RGATCY 2 cut(s) 202, 574
BstXI CCANNNNNNTGG 1 cut(s) 809
BstYI RGATCY 2 cut(s) 202, 574
Bsu36I CCTNAGG 1 cut(s) 831
BsuRI GGCC 2 cut(s) 121, 782
BtgI CCRYGG 1 cut(s) 96
BtsCI GGATG 3 cut(s) 26, 929, 1169
BtsI GCAGTG 1 cut(s) 374
BtsIMutI CAGTG 6 cut(s) 160, 358, 374, 444, 1008, 1313
BveI ACCTGC 1 cut(s) 667
Cac8I GCNNGC 4 cut(s) 132, 751, 755, 1413
CciI TCATGA 2 cut(s) 229, 775
CfoI GCGC 2 cut(s) 751, 753
Cfr13I GGNCC 1 cut(s) 1255
CseI GACGC 1 cut(s) 772
Csp6I GTAC 1 cut(s) 366
CviAII CATG 7 cut(s) 97, 131, 230, 410, 754, 776, 878
CviQI GTAC 1 cut(s) 366
DdeI CTNAG 7 cut(s) 214, 264, 630, 724, 831, 1194, 1362
DpnI GATC 5 cut(s) 204, 504, 576, 1007, 1278
DpnII GATC 5 cut(s) 202, 502, 574, 1005, 1276
Eam1104I CTCTTC 1 cut(s) 51
EarI CTCTTC 1 cut(s) 51
Eco130I CCWWGG 2 cut(s) 96, 744
Eco147I AGGCCT 2 cut(s) 121, 782
Eco31I GGTCTC 1 cut(s) 13
Eco47I GGWCC 1 cut(s) 1255
Eco57I CTGAAG 5 cut(s) 299, 1032, 1178, 1185, 1365
Eco81I CCTNAGG 1 cut(s) 831
Eco91I GGTNACC 1 cut(s) 167
EcoNI CCTNNNNNAGG 1 cut(s) 303
EcoO65I GGTNACC 1 cut(s) 167
EcoRII CCWGG 4 cut(s) 359, 379, 597, 1257
EcoT14I CCWWGG 2 cut(s) 96, 744
ErhI CCWWGG 2 cut(s) 96, 744
Esp3I CGTCTC 1 cut(s) 984
FaeI CATG 7 cut(s) 100, 134, 233, 413, 757, 779, 881
FaqI GGGAC 3 cut(s) 622, 1206, 1380
FatI CATG 7 cut(s) 96, 130, 229, 409, 753, 775, 877
Fnu4HI GCNGC 2 cut(s) 15, 276
FokI GGATG 3 cut(s) 13, 916, 1156
Fsp4HI GCNGC 2 cut(s) 15, 276
FspBI CTAG 2 cut(s) 693, 912
GlaI GCGC 2 cut(s) 750, 752
GluI GCNGC 2 cut(s) 15, 276
GsuI CTGGAG 1 cut(s) 1375
HaeIII GGCC 2 cut(s) 121, 782
HapII CCGG 2 cut(s) 1280, 1370
HgaI GACGC 1 cut(s) 772
HhaI GCGC 2 cut(s) 751, 753
Hin1I GRCGYC 2 cut(s) 764, 977
Hin1II CATG 7 cut(s) 100, 134, 233, 413, 757, 779, 881
Hin6I GCGC 2 cut(s) 749, 751
HinP1I GCGC 2 cut(s) 749, 751
HincII GTYRAC 2 cut(s) 321, 799
HindII GTYRAC 2 cut(s) 321, 799
HinfI GANTC 8 cut(s) 80, 192, 326, 371, 926, 1066, 1241, 1366
HpaI GTTAAC 1 cut(s) 799
HpaII CCGG 2 cut(s) 1280, 1370
HphI GGTGA 2 cut(s) 161, 216
Hpy166II GTNNAC 5 cut(s) 321, 366, 799, 1235, 1313
Hpy188I TCNGA 6 cut(s) 267, 934, 946, 1041, 1204, 1363
Hpy8I GTNNAC 5 cut(s) 321, 366, 799, 1235, 1313
HpyAV CCTTC 6 cut(s) 50, 398, 854, 929, 1209, 1319
HpyCH4III ACNGT 4 cut(s) 155, 240, 353, 612
HpyCH4IV ACGT 2 cut(s) 567, 977
HpyF10VI GCNNNNNNNGC 8 cut(s) 127, 441, 734, 763, 1057, 1143, 1295, 1339
HpyF3I CTNAG 7 cut(s) 214, 264, 630, 724, 831, 1194, 1362
HpySE526I ACGT 2 cut(s) 567, 977
Hsp92I GRCGYC 2 cut(s) 764, 977
Hsp92II CATG 7 cut(s) 100, 134, 233, 413, 757, 779, 881
HspAI GCGC 2 cut(s) 749, 751
Kpn2I TCCGGA 1 cut(s) 1369
KspAI GTTAAC 1 cut(s) 799
Kzo9I GATC 5 cut(s) 202, 502, 574, 1005, 1276
LmnI GCTCC 3 cut(s) 607, 691, 1372
Lsp1109I GCAGC 2 cut(s) 26, 287
LweI GCATC 3 cut(s) 514, 1195, 1307
MaeI CTAG 2 cut(s) 693, 912
MaeII ACGT 2 cut(s) 567, 977
MaeIII GTNAC 5 cut(s) 137, 167, 568, 887, 1083
MalI GATC 5 cut(s) 204, 504, 576, 1007, 1278
MboI GATC 5 cut(s) 202, 502, 574, 1005, 1276
MboII GAAGA 8 cut(s) 15, 68, 197, 305, 606, 980, 1103, 1106
MfeI CAATTG 1 cut(s) 963
MflI RGATCY 2 cut(s) 202, 574
MluCI AATT 5 cut(s) 467, 510, 953, 963, 1174
MlyI GAGTC 2 cut(s) 74, 935
MmeI TCCRAC 4 cut(s) 68, 174, 740, 1233
MroI TCCGGA 1 cut(s) 1369
MroXI GAANNNNTTC 1 cut(s) 678
MseI TTAA 5 cut(s) 143, 474, 530, 798, 1284
MspI CCGG 2 cut(s) 1280, 1370
MspR9I CCNGG 4 cut(s) 361, 381, 599, 1259
MunI CAATTG 1 cut(s) 963
MvaI CCWGG 4 cut(s) 361, 381, 599, 1259
MvnI CGCG 1 cut(s) 751
MwoI GCNNNNNNNGC 8 cut(s) 127, 441, 734, 763, 1057, 1143, 1295, 1339
NcoI CCATGG 1 cut(s) 96
NdeII GATC 5 cut(s) 202, 502, 574, 1005, 1276
NlaIII CATG 7 cut(s) 100, 134, 233, 413, 757, 779, 881
NlaIV GGNNCC 5 cut(s) 358, 603, 940, 1320, 1374
NmuCI GTSAC 3 cut(s) 137, 167, 887
NspI RCATGY 2 cut(s) 134, 757
PaeI GCATGC 2 cut(s) 134, 757
PagI TCATGA 2 cut(s) 229, 775
PauI GCGCGC 1 cut(s) 749
PceI AGGCCT 2 cut(s) 121, 782
PdmI GAANNNNTTC 1 cut(s) 678
PfeI GAWTC 6 cut(s) 192, 326, 371, 1066, 1241, 1366
PflMI CCANNNNNTGG 1 cut(s) 1382
PkrI GCNGC 2 cut(s) 16, 277
PleI GAGTC 2 cut(s) 74, 934
PpsI GAGTC 2 cut(s) 74, 934
Psp6I CCWGG 4 cut(s) 359, 379, 597, 1257
PspEI GGTNACC 1 cut(s) 167
PspGI CCWGG 4 cut(s) 359, 379, 597, 1257
PspN4I GGNNCC 5 cut(s) 358, 603, 940, 1320, 1374
PspPI GGNCC 1 cut(s) 1255
PstI CTGCAG 4 cut(s) 16, 277, 1029, 1083
PsuI RGATCY 2 cut(s) 202, 574
PteI GCGCGC 1 cut(s) 749
RsaI GTAC 1 cut(s) 367
RsaNI GTAC 1 cut(s) 366
SaqAI TTAA 5 cut(s) 143, 474, 530, 798, 1284
SatI GCNGC 2 cut(s) 15, 276
Sau3AI GATC 5 cut(s) 202, 502, 574, 1005, 1276
Sau96I GGNCC 1 cut(s) 1255
SchI GAGTC 2 cut(s) 74, 935
ScrFI CCNGG 4 cut(s) 361, 381, 599, 1259
SfaNI GCATC 3 cut(s) 514, 1195, 1307
SfcI CTRYAG 4 cut(s) 12, 273, 1025, 1079
SinI GGWCC 1 cut(s) 1255
SmlI CTYRAG 1 cut(s) 1061
SmoI CTYRAG 1 cut(s) 1061
SphI GCATGC 2 cut(s) 134, 757
Sse9I AATT 5 cut(s) 467, 510, 953, 963, 1174
SseBI AGGCCT 2 cut(s) 121, 782
SsiI CCGC 2 cut(s) 1296, 1349
SspMI CTAG 2 cut(s) 693, 912
StuI AGGCCT 2 cut(s) 121, 782
StyD4I CCNGG 4 cut(s) 359, 379, 597, 1257
StyI CCWWGG 2 cut(s) 96, 744
TaaI ACNGT 4 cut(s) 155, 240, 353, 612
TaiI ACGT 2 cut(s) 570, 980
TaqI TCGA 2 cut(s) 414, 1002
TaqII GACCGA 1 cut(s) 155
TasI AATT 5 cut(s) 467, 510, 953, 963, 1174
TatI WGTACW 1 cut(s) 365
TfiI GAWTC 6 cut(s) 192, 326, 371, 1066, 1241, 1366
Tru1I TTAA 5 cut(s) 143, 474, 530, 798, 1284
Tru9I TTAA 5 cut(s) 143, 474, 530, 798, 1284
TscAI CASTG 6 cut(s) 160, 358, 381, 451, 1015, 1320
TseFI GTSAC 3 cut(s) 137, 167, 887
TseI GCWGC 2 cut(s) 14, 275
Tsp45I GTSAC 3 cut(s) 137, 167, 887
TspRI CASTG 6 cut(s) 160, 358, 381, 451, 1015, 1320
Van91I CCANNNNNTGG 1 cut(s) 1382
VpaK11BI GGWCC 1 cut(s) 1255
XagI CCTNNNNNAGG 1 cut(s) 303
XapI RAATTY 1 cut(s) 467
XceI RCATGY 2 cut(s) 134, 757
XmnI GAANNNNTTC 1 cut(s) 678
XspI CTAG 2 cut(s) 693, 912
ZraI GACGTC 1 cut(s) 978
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.