FvH4_2g20730
MYB Family

Protein PHR1-LIKE 1-like isoform

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
17316789 .. 17321559
4771 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g20730.t1

Sequence Viewer

Length: 1542 bp
ATGGAGGCACGCCCTGCCATTCGGAGATCAACTGCAAATAGTCACATGGGAGTCTCTGGAGCACTATCTTCATCTACACCAGTCCTTCAATCCCCTTCGCAGGAGACATACCCCAAGTTGCAAGACTCACAACAGGTTTCGATGGAAAGATCTGTTGTTCATGCAGGTCACTTGACATCTAACAGTGGTGTAATTGGTCACATAATTTCATCACCATCAAGATTCTCAACAGATCTTCACTACTCATCTATTTCGCCTCGTGAGAAGCAGTCAAGAAAGAGTCCTTTCATTTCACAGTCCTCAAGCTCTGCGTCTATACCATTATCACATTCTTCTCCTTCAGAAGCTTTTCAATCTACCGCGTCTTGTGCCTATTCCAAAGAAAACAGTCATTCATGGGGTACAGATTCTCTGCCAGGGTTCCTTGATTTTCCTGTAAATACCCCTGTTCAGAATAGTCAAATAGAGAGCAGTAGTTGTAGTGGCATTATGGCTGCTGCAGATGAGTGGCAGGAGTGGGCAAGCCAGCTAGTTACTGATGATGATGCTTTGACTTCTAACTGGAGTGATCTTCTCGTTGACGACAATGTTACAAATCTGGAACCAAAGATGACATACCAGGTTCCCAAACCATCTTTGAATTTTTCAGCTCAGCAGTCCCTAGTTTCTCAGCAAGATCCTGCTTCATCTAGAGAACCATCTTTGAATTTTTCAGCTCAGCAGTCCCAAGTCTCTCAGCAACATCCTGCTTCATCTACAGAAATCATTCCTGCTCCATCTAGAGAAATCCTTCCTGGTCAATCTAAGGATATAATTTCTGTTACTACTACTCCTTCCTCAGCTAACAGTGCCGCAGCGAAGCCACGTATGCGTTGGACACCAGAACTTCATGAGTCTTTTGTCGAAGCTGTTAACCAACTTGGTGGTAGTGAAAGAGCAACTCCTAAGGGTGTGCTGAAGCTGATGAAAGTGGAAAGCTTGACTATCTATCATGTGAAAAGTCACTTGCAGAAATATAGGACCGCTAGATACAGACCAGACTCATCAGAAGGATCATTGGAGAAAAAATTAACTCCTCTCGAAGAAATGACATCTTTAGACTTGAAAACGGGTATCGAGATCACTGAAGCTCTGCGACTGCAGATGGAAGTTCAGAAGCGGCTGCATGAACAGCTTGAGATTCAGAGAAATCTACAGTTACGAATTGAAGAACAAGGGAAGTACCTTCAAATGATGTTTGAAAAGCAATGCAAATCCAGTATTGACAATATGAATGCGTCGTCATCCGGTGTGGAAAATCCTTCTGCTCAGCCTTCTGAGGCAATGCAAGTTTCTCCTGATAAAAGTGAATTGGAGACCTCCAAGGTGGAGCATGACAAGACCAAACATGATCCTGCCAAATCCATAGTTGCATCAGCAGAATGTGCTGAGGAGCCTATAGGAAAGCAAAAGTCCCCTGAAACTGAAGCTCCCACGGATTCTGAGCCGGATGTTTGTATGTCCAGTTCCCAACCTCCTAAGCGTCCCAAAATTAAAGAATAG

Protein Analysis

514

Amino Acids

56.21

Weight (kDa)

5.62

Isoelectric Point (pI)

71.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 289 - 340 4.9e-09 Myb-like DNA-binding domain
Myb_CC_LHEQLE PF14379 372 - 418 4.7e-25 MYB-CC type transfactor, LHEQLE motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 155
AccII CGCG 1 cut(s) 362
AciI CCGC 4 cut(s) 360, 852, 1023, 1159
AclWI GGATC 3 cut(s) 671, 1060, 1385
AcsI RAATTY 2 cut(s) 640, 706
AcuI CTGAAG 4 cut(s) 324, 977, 1146, 1485
AfaI GTAC 2 cut(s) 403, 1223
AfiI CCNNNNNNNGG 1 cut(s) 100
AgsI TTSAA 8 cut(s) 89, 353, 640, 706, 1105, 1208, 1229, 1241
AjnI CCWGG 3 cut(s) 415, 618, 793
Alw21I GWGCWC 1 cut(s) 64
Alw26I GTCTC 4 cut(s) 58, 98, 736, 1349
AlwI GGATC 3 cut(s) 671, 1060, 1385
ApeKI GCWGC 4 cut(s) 494, 497, 854, 1162
ApoI RAATTY 2 cut(s) 640, 706
Asp700I GAANNNNTTC 3 cut(s) 348, 765, 789
AspS9I GGNCC 1 cut(s) 1020
AsuHPI GGTGA 1 cut(s) 204
AvaII GGWCC 1 cut(s) 1020
AxyI CCTNAGG 1 cut(s) 945
BauI CACGAG 1 cut(s) 258
Bbv12I GWGCWC 1 cut(s) 64
BbvCI CCTCAGC 2 cut(s) 838, 1428
BbvI GCAGC 4 cut(s) 481, 484, 866, 1149
BccI CCATC 6 cut(s) 136, 223, 640, 706, 784, 1138
BciT130I CCWGG 3 cut(s) 417, 620, 795
BcoDI GTCTC 4 cut(s) 58, 98, 736, 1349
BfaI CTAG 5 cut(s) 530, 662, 690, 780, 1026
BfmI CTRYAG 5 cut(s) 498, 756, 1139, 1193, 1437
BfuAI ACCTGC 1 cut(s) 155
BglII AGATCT 2 cut(s) 149, 232
BisI GCNGC 6 cut(s) 495, 498, 852, 855, 1160, 1163
BlpI GCTNAGC 3 cut(s) 651, 717, 1308
BlsI GCNGC 6 cut(s) 496, 499, 853, 856, 1161, 1164
Bme1390I CCNGG 3 cut(s) 417, 620, 795
Bme18I GGWCC 1 cut(s) 1020
BmgT120I GGNCC 1 cut(s) 1020
BmiI GGNNCC 4 cut(s) 422, 603, 624, 1434
BmrFI CCNGG 3 cut(s) 417, 620, 795
BmsI GCATC 2 cut(s) 535, 1421
BpmI CTGGAG 2 cut(s) 78, 583
Bpu10I CCTNAGC 3 cut(s) 838, 1428, 1518
Bpu1102I GCTNAGC 3 cut(s) 651, 717, 1308
BpuEI CTTGAG 2 cut(s) 286, 1196
BsaAI YACGTR 1 cut(s) 866
BsaI GGTCTC 1 cut(s) 1349
BsaJI CCNNGG 3 cut(s) 416, 1362, 1473
BsaWI WCCGGW 1 cut(s) 1286
BsaXI ACNNNNNCTCC 4 cut(s) 814, 844, 1453, 1483
Bsc4I CCNNNNNNNGG 1 cut(s) 100
Bse1I ACTGG 4 cut(s) 80, 566, 1257, 1503
Bse21I CCTNAGG 1 cut(s) 945
Bse3DI GCAATG 2 cut(s) 1253, 1329
BseBI CCWGG 3 cut(s) 417, 620, 795
BseDI CCNNGG 3 cut(s) 416, 1362, 1473
BseGI GGATG 3 cut(s) 742, 1283, 1495
BseLI CCNNNNNNNGG 1 cut(s) 100
BseMI GCAATG 2 cut(s) 1253, 1329
BseMII CTCAG 9 cut(s) 665, 683, 731, 749, 852, 1308, 1322, 1419, 1473
BseNI ACTGG 4 cut(s) 80, 566, 1257, 1503
BseRI GAGGAG 2 cut(s) 1065, 1445
BseXI GCAGC 4 cut(s) 481, 484, 866, 1149
Bsh1236I CGCG 1 cut(s) 362
BsiHKAI GWGCWC 1 cut(s) 64
BsiSI CCGG 2 cut(s) 1287, 1487
BslFI GGGAC 4 cut(s) 643, 709, 1438, 1509
BslI CCNNNNNNNGG 1 cut(s) 100
BsmAI GTCTC 4 cut(s) 58, 98, 736, 1349
BsmFI GGGAC 4 cut(s) 643, 709, 1438, 1509
BsmI GAATGC 1 cut(s) 1279
Bso31I GGTCTC 1 cut(s) 1349
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 8 cut(s) 26, 149, 232, 568, 676, 1052, 1119, 1390
Bsp1720I GCTNAGC 3 cut(s) 651, 717, 1308
BspACI CCGC 4 cut(s) 360, 852, 1023, 1159
BspCNI CTCAG 9 cut(s) 664, 682, 730, 748, 851, 1309, 1321, 1420, 1474
BspFNI CGCG 1 cut(s) 362
BspHI TCATGA 1 cut(s) 889
BspLI GGNNCC 4 cut(s) 422, 603, 624, 1434
BspMAI CTGCAG 2 cut(s) 502, 1143
BspMI ACCTGC 1 cut(s) 155
BspPI GGATC 3 cut(s) 671, 1060, 1385
BspTNI GGTCTC 1 cut(s) 1349
BsrDI GCAATG 2 cut(s) 1253, 1329
BsrI ACTGG 4 cut(s) 80, 566, 1257, 1503
BssECI CCNNGG 3 cut(s) 416, 1362, 1473
BssMI GATC 8 cut(s) 26, 149, 232, 568, 676, 1052, 1119, 1390
BssSI CACGAG 1 cut(s) 258
BssT1I CCWWGG 1 cut(s) 1362
Bst2BI CACGAG 1 cut(s) 258
Bst2UI CCWGG 3 cut(s) 417, 620, 795
Bst4CI ACNGT 5 cut(s) 185, 297, 389, 848, 1197
BstAPI GCANNNNNTGC 2 cut(s) 14, 1424
BstBAI YACGTR 1 cut(s) 866
BstC8I GCNNGC 3 cut(s) 10, 523, 527
BstDSI CCRYGG 1 cut(s) 1473
BstF5I GGATG 3 cut(s) 742, 1283, 1495
BstFNI CGCG 1 cut(s) 362
BstKTI GATC 8 cut(s) 29, 152, 235, 571, 679, 1055, 1122, 1393
BstMAI GTCTC 4 cut(s) 58, 98, 736, 1349
BstMBI GATC 8 cut(s) 26, 149, 232, 568, 676, 1052, 1119, 1390
BstMWI GCNNNNNNNGC 6 cut(s) 14, 368, 848, 868, 1171, 1424
BstNI CCWGG 3 cut(s) 417, 620, 795
BstSCI CCNGG 3 cut(s) 415, 618, 793
BstSFI CTRYAG 5 cut(s) 498, 756, 1139, 1193, 1437
BstUI CGCG 1 cut(s) 362
BstV1I GCAGC 4 cut(s) 481, 484, 866, 1149
BstX2I RGATCY 3 cut(s) 149, 232, 676
BstXI CCANNNNNNTGG 1 cut(s) 923
BstYI RGATCY 3 cut(s) 149, 232, 676
Bsu36I CCTNAGG 1 cut(s) 945
BtgI CCRYGG 1 cut(s) 1473
BtsCI GGATG 3 cut(s) 742, 1283, 1495
BtsIMutI CAGTG 3 cut(s) 190, 853, 1122
BveI ACCTGC 1 cut(s) 155
Cac8I GCNNGC 3 cut(s) 10, 523, 527
CciI TCATGA 1 cut(s) 889
Cfr13I GGNCC 1 cut(s) 1020
CseI GACGC 4 cut(s) 300, 351, 1266, 1511
CsiI ACCWGGT 1 cut(s) 618
Csp6I GTAC 2 cut(s) 402, 1222
CviAII CATG 8 cut(s) 46, 161, 396, 890, 992, 1166, 1373, 1388
CviQI GTAC 2 cut(s) 402, 1222
DpnI GATC 8 cut(s) 28, 151, 234, 570, 678, 1054, 1121, 1392
DpnII GATC 8 cut(s) 26, 149, 232, 568, 676, 1052, 1119, 1390
Eco130I CCWWGG 1 cut(s) 1362
Eco31I GGTCTC 1 cut(s) 1349
Eco47I GGWCC 1 cut(s) 1020
Eco57I CTGAAG 4 cut(s) 324, 977, 1146, 1485
Eco81I CCTNAGG 1 cut(s) 945
EcoRII CCWGG 3 cut(s) 415, 618, 793
EcoT14I CCWWGG 1 cut(s) 1362
ErhI CCWWGG 1 cut(s) 1362
FaeI CATG 8 cut(s) 49, 164, 399, 893, 995, 1169, 1376, 1391
FaqI GGGAC 4 cut(s) 643, 709, 1438, 1509
FatI CATG 8 cut(s) 45, 160, 395, 889, 991, 1165, 1372, 1387
Fnu4HI GCNGC 6 cut(s) 495, 498, 852, 855, 1160, 1163
FokI GGATG 3 cut(s) 729, 1270, 1502
Fsp4HI GCNGC 6 cut(s) 495, 498, 852, 855, 1160, 1163
FspBI CTAG 5 cut(s) 530, 662, 690, 780, 1026
GluI GCNGC 6 cut(s) 495, 498, 852, 855, 1160, 1163
GsuI CTGGAG 2 cut(s) 78, 583
HapII CCGG 2 cut(s) 1287, 1487
HgaI GACGC 4 cut(s) 300, 351, 1266, 1511
Hin1II CATG 8 cut(s) 49, 164, 399, 893, 995, 1169, 1376, 1391
HincII GTYRAC 2 cut(s) 580, 913
HindII GTYRAC 2 cut(s) 580, 913
HindIII AAGCTT 2 cut(s) 345, 976
HinfI GANTC 9 cut(s) 51, 125, 222, 280, 407, 893, 1040, 1180, 1478
HpaI GTTAAC 1 cut(s) 913
HpaII CCGG 2 cut(s) 1287, 1487
HphI GGTGA 1 cut(s) 204
Hpy166II GTNNAC 2 cut(s) 580, 913
Hpy188I TCNGA 8 cut(s) 24, 343, 453, 1048, 1155, 1185, 1318, 1483
Hpy8I GTNNAC 2 cut(s) 580, 913
Hpy99I CGWCG 1 cut(s) 1282
HpyAV CCTTC 9 cut(s) 95, 105, 348, 800, 843, 1043, 1235, 1311, 1323
HpyCH4III ACNGT 5 cut(s) 185, 297, 389, 848, 1197
HpyCH4IV ACGT 1 cut(s) 865
HpyF10VI GCNNNNNNNGC 6 cut(s) 14, 368, 848, 868, 1171, 1424
HpySE526I ACGT 1 cut(s) 865
Hsp92II CATG 8 cut(s) 49, 164, 399, 893, 995, 1169, 1376, 1391
KspAI GTTAAC 1 cut(s) 913
Kzo9I GATC 8 cut(s) 26, 149, 232, 568, 676, 1052, 1119, 1390
LmnI GCTCC 5 cut(s) 59, 778, 1369, 1432, 1474
Lsp1109I GCAGC 4 cut(s) 481, 484, 866, 1149
LweI GCATC 2 cut(s) 535, 1421
MabI ACCWGGT 1 cut(s) 618
MaeI CTAG 5 cut(s) 530, 662, 690, 780, 1026
MaeII ACGT 1 cut(s) 865
MaeIII GTNAC 8 cut(s) 41, 167, 197, 532, 589, 820, 1001, 1197
MalI GATC 8 cut(s) 28, 151, 234, 570, 678, 1054, 1121, 1392
MboI GATC 8 cut(s) 26, 149, 232, 568, 676, 1052, 1119, 1390
MboII GAAGA 6 cut(s) 60, 227, 324, 563, 1094, 1220
MflI RGATCY 3 cut(s) 149, 232, 676
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 9 cut(s) 192, 204, 640, 706, 813, 1067, 1203, 1349, 1530
MlyI GAGTC 5 cut(s) 60, 119, 289, 902, 1034
MmeI TCCRAC 1 cut(s) 854
MnlI CCTC 8 cut(s) 267, 310, 847, 1086, 1312, 1369, 1423, 1524
MroXI GAANNNNTTC 3 cut(s) 348, 765, 789
MseI TTAA 3 cut(s) 912, 1070, 1533
MspI CCGG 2 cut(s) 1287, 1487
MspR9I CCNGG 3 cut(s) 417, 620, 795
Mva1269I GAATGC 1 cut(s) 1279
MvaI CCWGG 3 cut(s) 417, 620, 795
MvnI CGCG 1 cut(s) 362
MwoI GCNNNNNNNGC 6 cut(s) 14, 368, 848, 868, 1171, 1424
NdeII GATC 8 cut(s) 26, 149, 232, 568, 676, 1052, 1119, 1390
NlaIII CATG 8 cut(s) 49, 164, 399, 893, 995, 1169, 1376, 1391
NlaIV GGNNCC 4 cut(s) 422, 603, 624, 1434
NmuCI GTSAC 4 cut(s) 41, 167, 197, 1001
PagI TCATGA 1 cut(s) 889
PctI GAATGC 1 cut(s) 1279
PdmI GAANNNNTTC 3 cut(s) 348, 765, 789
PfeI GAWTC 4 cut(s) 222, 407, 1180, 1478
PkrI GCNGC 6 cut(s) 496, 499, 853, 856, 1161, 1164
PleI GAGTC 5 cut(s) 59, 119, 288, 901, 1034
PpsI GAGTC 5 cut(s) 59, 119, 288, 901, 1034
Ppu21I YACGTR 1 cut(s) 866
Psp6I CCWGG 3 cut(s) 415, 618, 793
PspGI CCWGG 3 cut(s) 415, 618, 793
PspN4I GGNNCC 4 cut(s) 422, 603, 624, 1434
PspPI GGNCC 1 cut(s) 1020
PsrI GAACNNNNNNTAC 2 cut(s) 1489, 1521
PstI CTGCAG 2 cut(s) 502, 1143
PsuI RGATCY 3 cut(s) 149, 232, 676
RsaI GTAC 2 cut(s) 403, 1223
RsaNI GTAC 2 cut(s) 402, 1222
SaqAI TTAA 3 cut(s) 912, 1070, 1533
SatI GCNGC 6 cut(s) 495, 498, 852, 855, 1160, 1163
Sau3AI GATC 8 cut(s) 26, 149, 232, 568, 676, 1052, 1119, 1390
Sau96I GGNCC 1 cut(s) 1020
SchI GAGTC 5 cut(s) 60, 119, 289, 902, 1034
ScrFI CCNGG 3 cut(s) 417, 620, 795
SduI GDGCHC 1 cut(s) 64
SexAI ACCWGGT 1 cut(s) 618
SfaNI GCATC 2 cut(s) 535, 1421
SfcI CTRYAG 5 cut(s) 498, 756, 1139, 1193, 1437
SinI GGWCC 1 cut(s) 1020
SmlI CTYRAG 2 cut(s) 301, 1175
SmoI CTYRAG 2 cut(s) 301, 1175
Sse9I AATT 9 cut(s) 192, 204, 640, 706, 813, 1067, 1203, 1349, 1530
SsiI CCGC 4 cut(s) 360, 852, 1023, 1159
SspMI CTAG 5 cut(s) 530, 662, 690, 780, 1026
StyD4I CCNGG 3 cut(s) 415, 618, 793
StyI CCWWGG 1 cut(s) 1362
TaaI ACNGT 5 cut(s) 185, 297, 389, 848, 1197
TaiI ACGT 1 cut(s) 868
TaqI TCGA 4 cut(s) 140, 903, 1080, 1116
TasI AATT 9 cut(s) 192, 204, 640, 706, 813, 1067, 1203, 1349, 1530
TauI GCSGC 2 cut(s) 854, 1162
TfiI GAWTC 4 cut(s) 222, 407, 1180, 1478
Tru1I TTAA 3 cut(s) 912, 1070, 1533
Tru9I TTAA 3 cut(s) 912, 1070, 1533
TscAI CASTG 3 cut(s) 190, 853, 1129
TseFI GTSAC 4 cut(s) 41, 167, 197, 1001
TseI GCWGC 4 cut(s) 494, 497, 854, 1162
Tsp45I GTSAC 4 cut(s) 41, 167, 197, 1001
TspGWI ACGGA 1 cut(s) 1490
TspRI CASTG 3 cut(s) 190, 853, 1129
VpaK11BI GGWCC 1 cut(s) 1020
XapI RAATTY 2 cut(s) 640, 706
XbaI TCTAGA 2 cut(s) 689, 779
XcmI CCANNNNNNNNNTGG 1 cut(s) 870
XmnI GAANNNNTTC 3 cut(s) 348, 765, 789
XspI CTAG 5 cut(s) 530, 662, 690, 780, 1026
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.