RchiOBHm_Chr6g0286911
MYB Family

Protein PHR1-LIKE 1-like isoform

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
50309279 .. 50314065
4787 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25736

Sequence Viewer

Length: 1518 bp
ATGGAGGCACGCCCTGCCATTCGGAGATCAGCTGCAAAGCAGCTTAGTCACATGGGAGTCTCTGGAGCATTATCTTCATCTTTACCAGTCCTTCAACCCTCATCGGAGGAGACGTATCCCAAGTTGCAAGACACACAGCAGGTTTCGATGGAAAGGCCTGTGGCACAAGCAGGTCACTTAACATCCAACAGTGGCGTAGTTGGTCACATATTTTCATCACCCTCAAGATTCTCTACAGATCTTCACTACTCATCTGTTTCACCTCGTGAGAAGCAGTCAAGAAATAATCCTTTCATTTTGCAATCCTTAAGTTCTGTGTCTATGCCATTACCACATTCTTCTCCTTCAGGAGTTTTTCAATCTACAGCATCTTGTGCCTATTCCAAAGAAAACAATGGTTCCTGGGGTACAGATTCTCTGCCAGGGTTCCTTGATTTTCCTGTAAATACCCCTGTTGAGAATAGTCAAATAGAGAGCAGTAGTTGTAGTGGCATTCTGGCTGCTGAAGATATAAGTAAGCAAAATGATTGGCAGGAGTGGGCAAACCAGCTAATTACCGATGATGATGCTCTGACTTCTAACTGGAGTGACCTTCTCGTTGACAACAATGTTACAGATCTGGAACCAAAGATGACATACCAGGTTCCCAAACCATCTTTGAATTTTTCAGCTCAGCAGTCCCAAGTTTCTCAGCAACAACCTGCTTCATCTAGAGAAATCATTCCTGCTCCATCTAGAGAAATCATTCCTGCTCCATCTAGAGAAATCCTTCCTGTTCAATCCGAGGATATCATTGCTGTTACTACTCCTTCCTCGGCTAACAGTGCCGCAGCGAAGCCACGTATGCGTTGGACACCAGAACTTCATGAAGCTTTTGTGGAAGCTGTTAACCAACTCGGTGGTAGTGAAAGAGCAACTCCTAAGGGTGTGCTGAAGCTCATGAAAGTGGAAGGCTTGACTATCTATCATGTGAAAAGTCACTTGCAGAAATATAGGACCGCTAGATACAGACCAGAGTCATCAGAAGGATCCTTGGAGAAAAAATTGACTCCTATCGAAGAAATGACATCTCTAGACTTGAAAACGGGTATCGAGATCACTGAAGCTCTGCGACTGCAGATGGAAGTTCAGAAGCGGCTGCATGAACAGCTTGAGATTCAAAGAAATCTACAGTTACGAATTGAAGAACAAGGGAAGTACCTTCAAATGATGTTTGAAAAGCAATGCAAGTCAGGTGGTGACAAGCTGAATGCTTCATCATCCAGTTTGGATGATCCTTCTGCTCAGCCTTCAGTGGCAATGCAAGTTTCTCCTGATAAAAGTGAATTGGAGCCCTCCAAGGTGGAGCATGGTGAGATTGAAGCTGATGCTGTCAAATCCAAAGTCACATCAGTAGAATGTGCTGAGGAGCGGATAGGGAAGCAAAAGTCACCCGAAACTGAGGCTCCCAAGGATTGTGAGCCGGATGTTTGTATGTCCAGTTCCCAACCTCCTAAGCGTCCCAAAATCAAAGAATAA

Protein Analysis

505

Amino Acids

55.52

Weight (kDa)

5.43

Isoelectric Point (pI)

72.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 281 - 332 9.9e-10 Myb-like DNA-binding domain
Myb_CC_LHEQLE PF14379 364 - 410 4.6e-25 MYB-CC type transfactor, LHEQLE motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 130, 161, 709
AccBSI CCGCTC 1 cut(s) 1411
AciI CCGC 4 cut(s) 828, 999, 1135, 1411
AclWI GGATC 3 cut(s) 1023, 1036, 1268
AcsI RAATTY 1 cut(s) 661
AcuI CTGAAG 5 cut(s) 330, 525, 953, 1122, 1275
AdeI CACNNNGTG 1 cut(s) 266
AfaI GTAC 2 cut(s) 409, 1199
AflII CTTAAG 1 cut(s) 307
AjnI CCWGG 3 cut(s) 401, 421, 639
Alw26I GTCTC 2 cut(s) 64, 104
AlwI GGATC 3 cut(s) 1023, 1036, 1268
AoxI GGCC 1 cut(s) 155
ApeKI GCWGC 5 cut(s) 32, 40, 500, 830, 1138
ApoI RAATTY 1 cut(s) 661
ArsI GACNNNNNNTTYG 2 cut(s) 1368, 1400
Asp700I GAANNNNTTC 3 cut(s) 720, 744, 768
AspS9I GGNCC 1 cut(s) 996
AsuHPI GGTGA 5 cut(s) 210, 252, 1250, 1364, 1422
AvaII GGWCC 1 cut(s) 996
AxyI CCTNAGG 1 cut(s) 921
BamHI GGATCC 1 cut(s) 1028
BanII GRGCYC 1 cut(s) 1335
BauI CACGAG 1 cut(s) 264
BbvCI CCTCAGC 1 cut(s) 1404
BbvI GCAGC 5 cut(s) 19, 52, 487, 842, 1125
BccI CCATC 5 cut(s) 142, 661, 739, 763, 1114
BcgI CGANNNNNNTGC 2 cut(s) 548, 582
BciT130I CCWGG 3 cut(s) 403, 423, 641
BciVI GTATCC 1 cut(s) 126
BcoDI GTCTC 2 cut(s) 64, 104
BfaI CTAG 5 cut(s) 711, 735, 759, 1002, 1073
BfmI CTRYAG 4 cut(s) 234, 363, 1115, 1169
BfrI CTTAAG 1 cut(s) 307
BfuAI ACCTGC 3 cut(s) 130, 161, 709
BfuI GTATCC 1 cut(s) 126
BglII AGATCT 2 cut(s) 238, 616
BisI GCNGC 7 cut(s) 33, 41, 501, 828, 831, 1136, 1139
BlpI GCTNAGC 2 cut(s) 672, 1284
BlsI GCNGC 7 cut(s) 34, 42, 502, 829, 832, 1137, 1140
Bme1390I CCNGG 3 cut(s) 403, 423, 641
Bme18I GGWCC 1 cut(s) 996
BmgT120I GGNCC 1 cut(s) 996
BmiI GGNNCC 7 cut(s) 400, 428, 624, 645, 1030, 1332, 1446
BmrFI CCNGG 3 cut(s) 403, 423, 641
BmsI GCATC 3 cut(s) 377, 556, 1357
BoxI GACNNNNGTC 1 cut(s) 1015
BpmI CTGGAG 2 cut(s) 84, 604
Bpu10I CCTNAGC 2 cut(s) 1404, 1494
Bpu1102I GCTNAGC 2 cut(s) 672, 1284
BpuEI CTTGAG 2 cut(s) 208, 1172
BsaAI YACGTR 1 cut(s) 842
BsaJI CCNNGG 7 cut(s) 402, 422, 783, 813, 1032, 1338, 1449
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 1429, 1459
Bse1I ACTGG 4 cut(s) 86, 587, 1263, 1479
Bse21I CCTNAGG 1 cut(s) 921
Bse3DI GCAATG 3 cut(s) 792, 1229, 1305
BseBI CCWGG 3 cut(s) 403, 423, 641
BseDI CCNNGG 7 cut(s) 402, 422, 783, 813, 1032, 1338, 1449
BseGI GGATG 4 cut(s) 182, 1259, 1276, 1471
BseMI GCAATG 3 cut(s) 792, 1229, 1305
BseMII CTCAG 5 cut(s) 686, 704, 1298, 1395, 1431
BseNI ACTGG 4 cut(s) 86, 587, 1263, 1479
BseRI GAGGAG 2 cut(s) 122, 1421
BseXI GCAGC 5 cut(s) 19, 52, 487, 842, 1125
BshFI GGCC 1 cut(s) 157
BsiSI CCGG 1 cut(s) 1463
BslFI GGGAC 2 cut(s) 664, 1485
BsmAI GTCTC 2 cut(s) 64, 104
BsmBI CGTCTC 1 cut(s) 104
BsmFI GGGAC 2 cut(s) 664, 1485
BsmI GAATGC 2 cut(s) 492, 1255
BsnI GGCC 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 1335
Bsp143I GATC 6 cut(s) 26, 238, 616, 1028, 1095, 1273
Bsp1720I GCTNAGC 2 cut(s) 672, 1284
BspACI CCGC 4 cut(s) 828, 999, 1135, 1411
BspANI GGCC 1 cut(s) 157
BspCNI CTCAG 5 cut(s) 685, 703, 1297, 1396, 1432
BspHI TCATGA 2 cut(s) 865, 939
BspLI GGNNCC 7 cut(s) 400, 428, 624, 645, 1030, 1332, 1446
BspMAI CTGCAG 1 cut(s) 1119
BspMI ACCTGC 3 cut(s) 130, 161, 709
BspPI GGATC 3 cut(s) 1023, 1036, 1268
BspTI CTTAAG 1 cut(s) 307
BsrBI CCGCTC 1 cut(s) 1411
BsrDI GCAATG 3 cut(s) 792, 1229, 1305
BsrI ACTGG 4 cut(s) 86, 587, 1263, 1479
BssECI CCNNGG 7 cut(s) 402, 422, 783, 813, 1032, 1338, 1449
BssMI GATC 6 cut(s) 26, 238, 616, 1028, 1095, 1273
BssSI CACGAG 1 cut(s) 264
BssT1I CCWWGG 3 cut(s) 1032, 1338, 1449
Bst2BI CACGAG 1 cut(s) 264
Bst2UI CCWGG 3 cut(s) 403, 423, 641
Bst4CI ACNGT 3 cut(s) 191, 824, 1173
BstAFI CTTAAG 1 cut(s) 307
BstAPI GCANNNNNTGC 2 cut(s) 14, 374
BstBAI YACGTR 1 cut(s) 842
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 8 cut(s) 44, 672, 690, 921, 1284, 1404, 1440, 1494
BstF5I GGATG 4 cut(s) 182, 1259, 1276, 1471
BstKTI GATC 6 cut(s) 29, 241, 619, 1031, 1098, 1276
BstMAI GTCTC 2 cut(s) 64, 104
BstMBI GATC 6 cut(s) 26, 238, 616, 1028, 1095, 1273
BstMWI GCNNNNNNNGC 5 cut(s) 14, 374, 824, 844, 1147
BstNI CCWGG 3 cut(s) 403, 423, 641
BstPAI GACNNNNGTC 1 cut(s) 1015
BstSCI CCNGG 3 cut(s) 401, 421, 639
BstSFI CTRYAG 4 cut(s) 234, 363, 1115, 1169
BstV1I GCAGC 5 cut(s) 19, 52, 487, 842, 1125
BstX2I RGATCY 3 cut(s) 238, 616, 1028
BstXI CCANNNNNNTGG 1 cut(s) 899
BstYI RGATCY 3 cut(s) 238, 616, 1028
Bsu36I CCTNAGG 1 cut(s) 921
BsuI GTATCC 1 cut(s) 126
BsuRI GGCC 1 cut(s) 157
BtsCI GGATG 4 cut(s) 182, 1259, 1276, 1471
BtsIMutI CAGTG 4 cut(s) 196, 829, 1098, 1299
BveI ACCTGC 3 cut(s) 130, 161, 709
Cac8I GCNNGC 1 cut(s) 10
CciI TCATGA 2 cut(s) 865, 939
Cfr13I GGNCC 1 cut(s) 996
CseI GACGC 1 cut(s) 1487
CsiI ACCWGGT 1 cut(s) 639
Csp6I GTAC 2 cut(s) 408, 1198
CspCI CAANNNNNGTGG 2 cut(s) 1216, 1251
CviAII CATG 6 cut(s) 52, 866, 940, 968, 1142, 1349
CviQI GTAC 2 cut(s) 408, 1198
DdeI CTNAG 8 cut(s) 44, 672, 690, 921, 1284, 1404, 1440, 1494
DpnI GATC 6 cut(s) 28, 240, 618, 1030, 1097, 1275
DpnII GATC 6 cut(s) 26, 238, 616, 1028, 1095, 1273
DraIII CACNNNGTG 1 cut(s) 266
Eco130I CCWWGG 3 cut(s) 1032, 1338, 1449
Eco147I AGGCCT 1 cut(s) 157
Eco24I GRGCYC 1 cut(s) 1335
Eco32I GATATC 1 cut(s) 790
Eco47I GGWCC 1 cut(s) 996
Eco57I CTGAAG 5 cut(s) 330, 525, 953, 1122, 1275
Eco81I CCTNAGG 1 cut(s) 921
EcoRII CCWGG 3 cut(s) 401, 421, 639
EcoRV GATATC 1 cut(s) 790
EcoT14I CCWWGG 3 cut(s) 1032, 1338, 1449
EcoT38I GRGCYC 1 cut(s) 1335
ErhI CCWWGG 3 cut(s) 1032, 1338, 1449
Esp3I CGTCTC 1 cut(s) 104
FaeI CATG 6 cut(s) 55, 869, 943, 971, 1145, 1352
FaqI GGGAC 2 cut(s) 664, 1485
FatI CATG 6 cut(s) 51, 865, 939, 967, 1141, 1348
Fnu4HI GCNGC 7 cut(s) 33, 41, 501, 828, 831, 1136, 1139
FokI GGATG 4 cut(s) 169, 1246, 1283, 1478
FriOI GRGCYC 1 cut(s) 1335
Fsp4HI GCNGC 7 cut(s) 33, 41, 501, 828, 831, 1136, 1139
FspBI CTAG 5 cut(s) 711, 735, 759, 1002, 1073
GluI GCNGC 7 cut(s) 33, 41, 501, 828, 831, 1136, 1139
GsuI CTGGAG 2 cut(s) 84, 604
HaeIII GGCC 1 cut(s) 157
HapII CCGG 1 cut(s) 1463
HgaI GACGC 1 cut(s) 1487
Hin1II CATG 6 cut(s) 55, 869, 943, 971, 1145, 1352
HincII GTYRAC 2 cut(s) 601, 889
HindII GTYRAC 2 cut(s) 601, 889
HindIII AAGCTT 1 cut(s) 870
HinfI GANTC 6 cut(s) 57, 228, 413, 1016, 1048, 1156
HpaI GTTAAC 1 cut(s) 889
HpaII CCGG 1 cut(s) 1463
HphI GGTGA 5 cut(s) 210, 252, 1250, 1364, 1422
Hpy166II GTNNAC 2 cut(s) 601, 889
Hpy188I TCNGA 6 cut(s) 24, 106, 573, 784, 1024, 1131
Hpy8I GTNNAC 2 cut(s) 601, 889
HpyCH4III ACNGT 3 cut(s) 191, 824, 1173
HpyCH4IV ACGT 2 cut(s) 113, 841
HpyCH4V TGCA 8 cut(s) 35, 127, 301, 985, 1117, 1141, 1227, 1303
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 374, 824, 844, 1147
HpyF3I CTNAG 8 cut(s) 44, 672, 690, 921, 1284, 1404, 1440, 1494
HpySE526I ACGT 2 cut(s) 113, 841
Hsp92II CATG 6 cut(s) 55, 869, 943, 971, 1145, 1352
KspAI GTTAAC 1 cut(s) 889
Kzo9I GATC 6 cut(s) 26, 238, 616, 1028, 1095, 1273
LmnI GCTCC 7 cut(s) 65, 733, 757, 1330, 1345, 1408, 1450
Lsp1109I GCAGC 5 cut(s) 19, 52, 487, 842, 1125
LweI GCATC 3 cut(s) 377, 556, 1357
MabI ACCWGGT 1 cut(s) 639
MaeI CTAG 5 cut(s) 711, 735, 759, 1002, 1073
MaeII ACGT 2 cut(s) 113, 841
MalI GATC 6 cut(s) 28, 240, 618, 1030, 1097, 1275
MbiI CCGCTC 1 cut(s) 1411
MboI GATC 6 cut(s) 26, 238, 616, 1028, 1095, 1273
MboII GAAGA 6 cut(s) 66, 233, 330, 518, 1070, 1196
MflI RGATCY 3 cut(s) 238, 616, 1028
MhlI GDGCHC 1 cut(s) 1335
MluCI AATT 5 cut(s) 552, 661, 1043, 1179, 1325
MlyI GAGTC 3 cut(s) 66, 1025, 1042
MmeI TCCRAC 2 cut(s) 210, 830
MroXI GAANNNNTTC 3 cut(s) 720, 744, 768
MseI TTAA 3 cut(s) 179, 308, 888
MslI CAYNNNNRTG 1 cut(s) 944
MspA1I CMGCKG 1 cut(s) 32
MspCI CTTAAG 1 cut(s) 307
MspI CCGG 1 cut(s) 1463
MspR9I CCNGG 3 cut(s) 403, 423, 641
Mva1269I GAATGC 2 cut(s) 492, 1255
MvaI CCWGG 3 cut(s) 403, 423, 641
MwoI GCNNNNNNNGC 5 cut(s) 14, 374, 824, 844, 1147
NdeII GATC 6 cut(s) 26, 238, 616, 1028, 1095, 1273
NlaIII CATG 6 cut(s) 55, 869, 943, 971, 1145, 1352
NlaIV GGNNCC 7 cut(s) 400, 428, 624, 645, 1030, 1332, 1446
NmeAIII GCCGAG 1 cut(s) 794
NmuCI GTSAC 8 cut(s) 47, 173, 203, 587, 977, 1238, 1384, 1428
PagI TCATGA 2 cut(s) 865, 939
PceI AGGCCT 1 cut(s) 157
PcsI WCGNNNNNNNCGW 1 cut(s) 110
PctI GAATGC 2 cut(s) 492, 1255
PdmI GAANNNNTTC 3 cut(s) 720, 744, 768
PfeI GAWTC 3 cut(s) 228, 413, 1156
PkrI GCNGC 7 cut(s) 34, 42, 502, 829, 832, 1137, 1140
PleI GAGTC 3 cut(s) 65, 1024, 1042
PpsI GAGTC 3 cut(s) 65, 1024, 1042
Ppu21I YACGTR 1 cut(s) 842
PshAI GACNNNNGTC 1 cut(s) 1015
Psp6I CCWGG 3 cut(s) 401, 421, 639
PspGI CCWGG 3 cut(s) 401, 421, 639
PspN4I GGNNCC 7 cut(s) 400, 428, 624, 645, 1030, 1332, 1446
PspPI GGNCC 1 cut(s) 996
PsrI GAACNNNNNNTAC 2 cut(s) 1465, 1497
PstI CTGCAG 1 cut(s) 1119
PsuI RGATCY 3 cut(s) 238, 616, 1028
PvuII CAGCTG 1 cut(s) 32
RsaI GTAC 2 cut(s) 409, 1199
RsaNI GTAC 2 cut(s) 408, 1198
RseI CAYNNNNRTG 1 cut(s) 944
SaqAI TTAA 3 cut(s) 179, 308, 888
SatI GCNGC 7 cut(s) 33, 41, 501, 828, 831, 1136, 1139
Sau3AI GATC 6 cut(s) 26, 238, 616, 1028, 1095, 1273
Sau96I GGNCC 1 cut(s) 996
SchI GAGTC 3 cut(s) 66, 1025, 1042
ScrFI CCNGG 3 cut(s) 403, 423, 641
SduI GDGCHC 1 cut(s) 1335
SexAI ACCWGGT 1 cut(s) 639
SfaNI GCATC 3 cut(s) 377, 556, 1357
SfcI CTRYAG 4 cut(s) 234, 363, 1115, 1169
SinI GGWCC 1 cut(s) 996
SmiMI CAYNNNNRTG 1 cut(s) 944
SmlI CTYRAG 3 cut(s) 223, 307, 1151
SmoI CTYRAG 3 cut(s) 223, 307, 1151
Sse9I AATT 5 cut(s) 552, 661, 1043, 1179, 1325
SseBI AGGCCT 1 cut(s) 157
SsiI CCGC 4 cut(s) 828, 999, 1135, 1411
SspMI CTAG 5 cut(s) 711, 735, 759, 1002, 1073
StuI AGGCCT 1 cut(s) 157
StyD4I CCNGG 3 cut(s) 401, 421, 639
StyI CCWWGG 3 cut(s) 1032, 1338, 1449
TaaI ACNGT 3 cut(s) 191, 824, 1173
TaiI ACGT 2 cut(s) 116, 844
TaqI TCGA 3 cut(s) 146, 1056, 1092
TasI AATT 5 cut(s) 552, 661, 1043, 1179, 1325
TauI GCSGC 2 cut(s) 830, 1138
TfiI GAWTC 3 cut(s) 228, 413, 1156
Tru1I TTAA 3 cut(s) 179, 308, 888
Tru9I TTAA 3 cut(s) 179, 308, 888
TscAI CASTG 4 cut(s) 196, 829, 1105, 1299
TseFI GTSAC 8 cut(s) 47, 173, 203, 587, 977, 1238, 1384, 1428
TseI GCWGC 5 cut(s) 32, 40, 500, 830, 1138
Tsp45I GTSAC 8 cut(s) 47, 173, 203, 587, 977, 1238, 1384, 1428
TspDTI ATGAA 9 cut(s) 66, 204, 283, 696, 854, 882, 956, 1158, 1245
TspRI CASTG 4 cut(s) 196, 829, 1105, 1299
Vha464I CTTAAG 1 cut(s) 307
VpaK11BI GGWCC 1 cut(s) 996
XapI RAATTY 1 cut(s) 661
XbaI TCTAGA 4 cut(s) 710, 734, 758, 1072
XcmI CCANNNNNNNNNTGG 1 cut(s) 846
XmnI GAANNNNTTC 3 cut(s) 720, 744, 768
XspI CTAG 5 cut(s) 711, 735, 759, 1002, 1073
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.