Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007621

Physical Location & Seq

Genomic Coordinates Reverse (-)

29279170 .. 29279538

Gene Structure 369 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0184800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGATGACTCTATCAACCATGGCCTAATTGATAGCAGTGAACATGGTGATGGTGATCATTACTTGTGCTTTAAAGATGATGACACTGATGAATCCCATTGTATGTATGTCATATTGAGTGGCACTGCACGTCTCAATGTTCTCTTACCTACAGCCACCATTATTTCTTTCACCATTTTTGCTCCTATCCTTACCAATGATGGCACATGTACCGACTTCAGCCGTTGGCTGATGGGTTTCTTCATTGCCCTTTCAACAGCCTCCTGCATTATTTTCACATTCACTGATAGCTTTATACTATGGAGTAGCCACATTTCGGGGAATTTGGACTTTCAATGGTGGCCGGAAGAGGCCTTGCGTTCCATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007275 GO:0007623 GO:0008150 GO:0009267 GO:0009314 GO:0009416 GO:0009555 GO:0009605 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0016036 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048511 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055063 GO:0055081 GO:0060255 GO:0065007 GO:0065008 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071496 GO:0072505 GO:0080090 GO:0098771 GO:0104004 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

122

Amino Acids

13.72

Weight (kDa)

4.2

Isoelectric Point (pI)

56.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF679	PF05078	41 - 99	2.6e-18	Protein of unknown function (DUF679)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0007621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28610
fragaria_vesca	FvH4_2g20730 FvH4_2g20730
malus_domestica	MD00G1060900.v1.1 MD05G1189400.v1.1
prunus_persica	Prupe.8G216800_v2.0.a1 Prupe.8G216800_v2.0.a1 Prupe.8G216800_v2.0.a1 Prupe.8G216800_v2.0.a1 Prupe.8G216800_v2.0.a1
pyrus_communis	pycom05g17450 pycom10g15330
rosa_chinensis	RchiOBHm_Chr6g0286911
rosa_laevigata	RLG00000012527
rosa_multiflora	Rmu_sc0002520.1_g000011
rosa_roxburghii	Rroxscaffold_7G00181810
rosa_rugosa	Rorug06G0184800 Rorug06G0184900 Rorug06G0185000
rosa_samantha	Rh6AG296700 Rh6BG301300 Rh6CG308800 Rh6DG292600
rosa_wichuraiana	Rw6G025600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	341
AcsI	RAATTY	1 cut(s)	322
AcuI	CTGAAG	1 cut(s)	202
AfaI	GTAC	1 cut(s)	211
AfiI	CCNNNNNNNGG	1 cut(s)	316
AflIII	ACRYGT	1 cut(s)	206
AgsI	TTSAA	2 cut(s)	255, 335
AjiI	CACGTC	1 cut(s)	131
AluBI	AGCT	1 cut(s)	291
AluI	AGCT	1 cut(s)	291
Alw26I	GTCTC	1 cut(s)	137
AoxI	GGCC	3 cut(s)	22, 341, 351
ApoI	RAATTY	1 cut(s)	322
AsuHPI	GGTGA	3 cut(s)	59, 65, 163
BccI	CCATC	3 cut(s)	44, 194, 226
BceAI	ACGGC	1 cut(s)	207
BclI	TGATCA	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	137
BfmI	CTRYAG	1 cut(s)	150
BmgBI	CACGTC	1 cut(s)	131
BsaBI	GATNNNNATC	1 cut(s)	54
BsaJI	CCNNGG	1 cut(s)	19
Bsc4I	CCNNNNNNNGG	1 cut(s)	316
Bse3DI	GCAATG	1 cut(s)	243
Bse8I	GATNNNNATC	1 cut(s)	54
BseDI	CCNNGG	1 cut(s)	19
BseGI	GGATG	1 cut(s)	10
BseJI	GATNNNNATC	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	316
BseMI	GCAATG	1 cut(s)	243
BsgI	GTGCAG	1 cut(s)	111
BshFI	GGCC	3 cut(s)	24, 343, 353
BsiSI	CCGG	1 cut(s)	344
BslI	CCNNNNNNNGG	1 cut(s)	316
BsmAI	GTCTC	1 cut(s)	137
BsmBI	CGTCTC	1 cut(s)	137
BsnI	GGCC	3 cut(s)	24, 343, 353
Bsp143I	GATC	1 cut(s)	55
Bsp19I	CCATGG	1 cut(s)	19
BspANI	GGCC	3 cut(s)	24, 343, 353
BsrDI	GCAATG	1 cut(s)	243
BssECI	CCNNGG	1 cut(s)	19
BssMI	GATC	1 cut(s)	55
BssT1I	CCWWGG	1 cut(s)	19
Bst6I	CTCTTC	1 cut(s)	342
BstDSI	CCRYGG	1 cut(s)	19
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	58
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	1 cut(s)	55
BstNSI	RCATGY	1 cut(s)	210
BstSFI	CTRYAG	1 cut(s)	150
BsuRI	GGCC	3 cut(s)	24, 343, 353
BtgI	CCRYGG	1 cut(s)	19
BtrI	CACGTC	1 cut(s)	131
BtsCI	GGATG	1 cut(s)	10
BtsI	GCAGTG	2 cut(s)	43, 123
BtsIMutI	CAGTG	4 cut(s)	43, 84, 123, 282
Csp6I	GTAC	1 cut(s)	210
CviAII	CATG	3 cut(s)	20, 44, 207
CviJI	RGCY	9 cut(s)	24, 155, 222, 229, 260, 291, 309, 343, 353
CviKI_1	RGCY	9 cut(s)	24, 155, 222, 229, 260, 291, 309, 343, 353
CviQI	GTAC	1 cut(s)	210
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
DraI	TTTAAA	1 cut(s)	73
EaeI	YGGCCR	1 cut(s)	341
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
Eco130I	CCWWGG	1 cut(s)	19
Eco147I	AGGCCT	1 cut(s)	353
Eco57I	CTGAAG	1 cut(s)	202
EcoT14I	CCWWGG	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	19
Esp3I	CGTCTC	1 cut(s)	137
FaeI	CATG	3 cut(s)	23, 47, 210
FaiI	YATR	8 cut(s)	21, 45, 104, 108, 113, 208, 296, 301
FatI	CATG	3 cut(s)	19, 43, 206
FbaI	TGATCA	1 cut(s)	55
FokI	GGATG	1 cut(s)	17
HaeIII	GGCC	3 cut(s)	24, 343, 353
HapII	CCGG	1 cut(s)	344
Hin1II	CATG	3 cut(s)	23, 47, 210
HinfI	GANTC	2 cut(s)	8, 92
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	3 cut(s)	59, 65, 163
Hpy166II	GTNNAC	1 cut(s)	41
Hpy188I	TCNGA	1 cut(s)	368
Hpy8I	GTNNAC	1 cut(s)	41
HpyCH4IV	ACGT	1 cut(s)	130
HpyCH4V	TGCA	2 cut(s)	128, 267
HpySE526I	ACGT	1 cut(s)	130
Hsp92II	CATG	3 cut(s)	23, 47, 210
Ksp22I	TGATCA	1 cut(s)	55
Kzo9I	GATC	1 cut(s)	55
LmnI	GCTCC	1 cut(s)	187
LpnPI	CCDG	2 cut(s)	277, 357
MaeII	ACGT	1 cut(s)	130
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MboII	GAAGA	2 cut(s)	232, 359
MluCI	AATT	2 cut(s)	27, 322
MlyI	GAGTC	1 cut(s)	2
MnlI	CCTC	2 cut(s)	271, 343
MseI	TTAA	1 cut(s)	72
MslI	CAYNNNNRTG	1 cut(s)	48
MspI	CCGG	1 cut(s)	344
NcoI	CCATGG	1 cut(s)	19
NdeII	GATC	1 cut(s)	55
NlaIII	CATG	3 cut(s)	23, 47, 210
NspI	RCATGY	1 cut(s)	210
PceI	AGGCCT	1 cut(s)	353
PciI	ACATGT	1 cut(s)	206
PfeI	GAWTC	1 cut(s)	92
PleI	GAGTC	1 cut(s)	2
PpsI	GAGTC	1 cut(s)	2
PscI	ACATGT	1 cut(s)	206
RsaI	GTAC	1 cut(s)	211
RsaNI	GTAC	1 cut(s)	210
RseI	CAYNNNNRTG	1 cut(s)	48
SaqAI	TTAA	1 cut(s)	72
Sau3AI	GATC	1 cut(s)	55
SchI	GAGTC	1 cut(s)	2
SetI	ASST	3 cut(s)	133, 151, 293
SfcI	CTRYAG	1 cut(s)	150
SgeI	CNNG	8 cut(s)	32, 56, 76, 141, 219, 276, 330, 356
SmiMI	CAYNNNNRTG	1 cut(s)	48
Sse9I	AATT	2 cut(s)	27, 322
SseBI	AGGCCT	1 cut(s)	353
StuI	AGGCCT	1 cut(s)	353
StyI	CCWWGG	1 cut(s)	19
TaiI	ACGT	1 cut(s)	133
TasI	AATT	2 cut(s)	27, 322
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	1 cut(s)	72
Tru9I	TTAA	1 cut(s)	72
TscAI	CASTG	4 cut(s)	43, 91, 130, 289
TspDTI	ATGAA	2 cut(s)	105, 232
TspRI	CASTG	4 cut(s)	43, 91, 130, 289
XapI	RAATTY	1 cut(s)	322
XceI	RCATGY	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.