Rroxscaffold_7G00181810
MYB Family

Protein PHR1-LIKE 1-like isoform

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Reverse (-)
20869845 .. 20874269
4425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00181810.1

Sequence Viewer

Length: 1338 bp
ATGGAGGCCCGCCCTGCCATTCGGAGATCAGCTGCAAAGCAGCTTAGTCACATGGGAGTCTCTGGAGCACTATCTTCATCTTTACCAGTCCTTCAACCCTCATCAGAGGAGACATATCCCAAGTTGCAAGACACACAGCAGGTTTCGATGGAAAGGCCTGTGGCACAAGCAGGTCACTTAACATCTAACAGTGGCGTAGTTGGTCACATATTTTCATCACCATCAAGATTCTCTACAGATCTTCACTACTCAGCTGTTTCACCTCATGAGAAGCAGTCAAGAAATCCTTTCATTTCGCAGTCCTCAAGTTCTGTGTCTATGCCATTACCACATTCTTCTCCTTCAGGAGTTTTTCAATCTACAGCATCTTGTGCCTATTCCAAAGAAAGCAATGGTTCCTGGGGTACAGATTCTTTGCCAGGGTTCCTTGATTTTCCTGTTAATACCCCTGTTGAGAATAGTCAAATAGAGTGCAGTAGTTGTAGTGGCATTCTGGCTGCTGAAGATATAAGTAAGCAAAATGATTGGCAGGAGTGGGCAAACCAGCTAATTACCGATGATGATGCTTTGACTTCTAACTGGAGTGACCTTCTCGTTGACAACAATGTTACAGATCTGGAACCAAAGATGACATACCAGGTTCCCAAACCATCTTTGAATTTTTCAGCTCAGCAGTCCCAAGTTTCTCAGCAACAACCTGCTTCATCTAGAGAAATCATTCCTGCTCCATCTAGAGAAATCCTTCCTGTTCAATCTGAGGATATCATTGCTGTTACTACTCCTTCCTCGGCTAACAGCGCCGCAGCGAAGCCACGTATGCGTTGGACACCAGAACTTCATGAAGCTTTTGTGGAAGCTGTTAACCAACTTGGTGGTAGTGAAAGAGCAACTCCTAAGGGTGTGCTGAAGCTCATGAAAGTGGAAGGCTTGACTATCTATCATGTGAAAAGTCACTTGCAGTTTGGGGCAGAGGTAAATAGATCACATAAACAATCAGCAAATAGTAGCAATCGGATACAAAATAACAAAGACTCCTTGGGTATCGAGATCACTGAAGCTCTGCGACTGCAGATGGAAGTTCAGAAGCGGCTGCATGAACAGCTTGAGCCTTCAGAGGCAATGCAAGTTTCTCCTGATAAAAGTGAATTGGAGCCCTCCAAGGTGGAGCATGGTGAGACTGAAGCTGATGCTGTCAAATCCAAAGTCGCATCAGTAGAATGTGCTGAGGAGCGGATAGGGAAGCAAAAGTCACCTGAAACTGAGGCTCCCAAGGATTGTGAGCCGGATGTTTGTATGTCCAGTTCCCAACCTCCTAAGCGTCCCAAAATCAAAGAATAA

Protein Analysis

445

Amino Acids

48.52

Weight (kDa)

5.42

Isoelectric Point (pI)

74.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 272 - 320 3.8e-08 Myb-like DNA-binding domain
Myb_CC_LHEQLE PF14379 348 - 375 2e-10 MYB-CC type transfactor, LHEQLE motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 130, 161, 706
AccBSI CCGCTC 1 cut(s) 1231
AciI CCGC 4 cut(s) 10, 801, 1087, 1231
AcsI RAATTY 1 cut(s) 658
AcuI CTGAAG 6 cut(s) 327, 522, 926, 1074, 1095, 1200
AfaI GTAC 1 cut(s) 406
AgsI TTSAA 4 cut(s) 95, 356, 658, 752
AjnI CCWGG 3 cut(s) 398, 418, 636
Alw21I GWGCWC 1 cut(s) 70
Alw26I GTCTC 3 cut(s) 64, 104, 1169
AoxI GGCC 2 cut(s) 6, 155
ApeKI GCWGC 5 cut(s) 32, 40, 497, 803, 1090
ApoI RAATTY 1 cut(s) 658
ArsI GACNNNNNNTTYG 2 cut(s) 1188, 1220
Asp700I GAANNNNTTC 2 cut(s) 717, 741
AspLEI GCGC 1 cut(s) 800
AspS9I GGNCC 1 cut(s) 7
AsuHPI GGTGA 4 cut(s) 210, 252, 1184, 1242
AxyI CCTNAGG 1 cut(s) 894
BanII GRGCYC 1 cut(s) 1155
Bbv12I GWGCWC 1 cut(s) 70
BbvCI CCTCAGC 1 cut(s) 1224
BbvI GCAGC 5 cut(s) 19, 52, 484, 815, 1077
BccI CCATC 5 cut(s) 142, 229, 658, 736, 1066
BcgI CGANNNNNNTGC 2 cut(s) 545, 579
BciT130I CCWGG 3 cut(s) 400, 420, 638
BciVI GTATCC 1 cut(s) 1008
BcoDI GTCTC 3 cut(s) 64, 104, 1169
BfaI CTAG 2 cut(s) 708, 732
BfmI CTRYAG 3 cut(s) 234, 360, 1067
BfoI RGCGCY 1 cut(s) 801
BfuAI ACCTGC 3 cut(s) 130, 161, 706
BfuI GTATCC 1 cut(s) 1008
BglII AGATCT 2 cut(s) 238, 613
BisI GCNGC 7 cut(s) 33, 41, 498, 801, 804, 1088, 1091
BlpI GCTNAGC 1 cut(s) 669
BlsI GCNGC 7 cut(s) 34, 42, 499, 802, 805, 1089, 1092
Bme1390I CCNGG 3 cut(s) 400, 420, 638
BmgT120I GGNCC 1 cut(s) 7
BmiI GGNNCC 6 cut(s) 397, 425, 621, 642, 1152, 1266
BmrFI CCNGG 3 cut(s) 400, 420, 638
BmsI GCATC 4 cut(s) 374, 553, 1177, 1217
BpmI CTGGAG 2 cut(s) 84, 601
Bpu10I CCTNAGC 2 cut(s) 1224, 1314
Bpu1102I GCTNAGC 1 cut(s) 669
BpuEI CTTGAG 2 cut(s) 289, 1124
BsaAI YACGTR 1 cut(s) 815
BsaJI CCNNGG 6 cut(s) 399, 419, 786, 1035, 1158, 1269
BsaXI ACNNNNNCTCC 4 cut(s) 1016, 1046, 1249, 1279
Bse1I ACTGG 3 cut(s) 86, 584, 1299
Bse21I CCTNAGG 1 cut(s) 894
Bse3DI GCAATG 3 cut(s) 397, 765, 1125
BseBI CCWGG 3 cut(s) 400, 420, 638
BseDI CCNNGG 6 cut(s) 399, 419, 786, 1035, 1158, 1269
BseGI GGATG 1 cut(s) 1291
BseMI GCAATG 3 cut(s) 397, 765, 1125
BseMII CTCAG 6 cut(s) 264, 683, 701, 747, 1215, 1251
BseNI ACTGG 3 cut(s) 86, 584, 1299
BseRI GAGGAG 2 cut(s) 122, 1241
BseXI GCAGC 5 cut(s) 19, 52, 484, 815, 1077
BsgI GTGCAG 1 cut(s) 493
BshFI GGCC 2 cut(s) 8, 157
BsiHKAI GWGCWC 1 cut(s) 70
BsiSI CCGG 1 cut(s) 1283
BslFI GGGAC 2 cut(s) 661, 1305
BsmAI GTCTC 3 cut(s) 64, 104, 1169
BsmFI GGGAC 2 cut(s) 661, 1305
BsmI GAATGC 1 cut(s) 489
BsnI GGCC 2 cut(s) 8, 157
Bsp1286I GDGCHC 2 cut(s) 70, 1155
Bsp143I GATC 5 cut(s) 26, 238, 613, 980, 1047
Bsp1720I GCTNAGC 1 cut(s) 669
BspACI CCGC 4 cut(s) 10, 801, 1087, 1231
BspANI GGCC 2 cut(s) 8, 157
BspCNI CTCAG 6 cut(s) 263, 682, 700, 748, 1216, 1252
BspHI TCATGA 3 cut(s) 265, 838, 912
BspLI GGNNCC 6 cut(s) 397, 425, 621, 642, 1152, 1266
BspMAI CTGCAG 1 cut(s) 1071
BspMI ACCTGC 3 cut(s) 130, 161, 706
BsrBI CCGCTC 1 cut(s) 1231
BsrDI GCAATG 3 cut(s) 397, 765, 1125
BsrI ACTGG 3 cut(s) 86, 584, 1299
BssECI CCNNGG 6 cut(s) 399, 419, 786, 1035, 1158, 1269
BssMI GATC 5 cut(s) 26, 238, 613, 980, 1047
BssT1I CCWWGG 3 cut(s) 1035, 1158, 1269
Bst2UI CCWGG 3 cut(s) 400, 420, 638
Bst4CI ACNGT 1 cut(s) 191
BstAPI GCANNNNNTGC 1 cut(s) 371
BstBAI YACGTR 1 cut(s) 815
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 9 cut(s) 44, 250, 669, 687, 756, 894, 1224, 1260, 1314
BstF5I GGATG 1 cut(s) 1291
BstH2I RGCGCY 1 cut(s) 801
BstHHI GCGC 1 cut(s) 800
BstKTI GATC 5 cut(s) 29, 241, 616, 983, 1050
BstMAI GTCTC 3 cut(s) 64, 104, 1169
BstMBI GATC 5 cut(s) 26, 238, 613, 980, 1047
BstMWI GCNNNNNNNGC 5 cut(s) 14, 371, 797, 817, 1099
BstNI CCWGG 3 cut(s) 400, 420, 638
BstSCI CCNGG 3 cut(s) 398, 418, 636
BstSFI CTRYAG 3 cut(s) 234, 360, 1067
BstV1I GCAGC 5 cut(s) 19, 52, 484, 815, 1077
BstX2I RGATCY 2 cut(s) 238, 613
BstXI CCANNNNNNTGG 1 cut(s) 872
BstYI RGATCY 2 cut(s) 238, 613
Bsu36I CCTNAGG 1 cut(s) 894
BsuI GTATCC 1 cut(s) 1008
BsuRI GGCC 2 cut(s) 8, 157
BtsCI GGATG 1 cut(s) 1291
BtsIMutI CAGTG 2 cut(s) 196, 1050
BveI ACCTGC 3 cut(s) 130, 161, 706
Cac8I GCNNGC 1 cut(s) 10
CciI TCATGA 3 cut(s) 265, 838, 912
CfoI GCGC 1 cut(s) 800
Cfr13I GGNCC 1 cut(s) 7
CseI GACGC 1 cut(s) 1307
CsiI ACCWGGT 1 cut(s) 636
Csp6I GTAC 1 cut(s) 405
CviAII CATG 7 cut(s) 52, 266, 839, 913, 941, 1094, 1169
CviQI GTAC 1 cut(s) 405
DdeI CTNAG 9 cut(s) 44, 250, 669, 687, 756, 894, 1224, 1260, 1314
DpnI GATC 5 cut(s) 28, 240, 615, 982, 1049
DpnII GATC 5 cut(s) 26, 238, 613, 980, 1047
Eco130I CCWWGG 3 cut(s) 1035, 1158, 1269
Eco147I AGGCCT 1 cut(s) 157
Eco24I GRGCYC 1 cut(s) 1155
Eco32I GATATC 1 cut(s) 763
Eco57I CTGAAG 6 cut(s) 327, 522, 926, 1074, 1095, 1200
Eco81I CCTNAGG 1 cut(s) 894
EcoRII CCWGG 3 cut(s) 398, 418, 636
EcoRV GATATC 1 cut(s) 763
EcoT14I CCWWGG 3 cut(s) 1035, 1158, 1269
EcoT38I GRGCYC 1 cut(s) 1155
ErhI CCWWGG 3 cut(s) 1035, 1158, 1269
FaeI CATG 7 cut(s) 55, 269, 842, 916, 944, 1097, 1172
FalI AAGNNNNNCTT 2 cut(s) 271, 303
FaqI GGGAC 2 cut(s) 661, 1305
FatI CATG 7 cut(s) 51, 265, 838, 912, 940, 1093, 1168
FauI CCCGC 1 cut(s) 17
Fnu4HI GCNGC 7 cut(s) 33, 41, 498, 801, 804, 1088, 1091
FokI GGATG 1 cut(s) 1298
FriOI GRGCYC 1 cut(s) 1155
Fsp4HI GCNGC 7 cut(s) 33, 41, 498, 801, 804, 1088, 1091
FspBI CTAG 2 cut(s) 708, 732
GlaI GCGC 1 cut(s) 799
GluI GCNGC 7 cut(s) 33, 41, 498, 801, 804, 1088, 1091
GsuI CTGGAG 2 cut(s) 84, 601
HaeII RGCGCY 1 cut(s) 801
HaeIII GGCC 2 cut(s) 8, 157
HapII CCGG 1 cut(s) 1283
HgaI GACGC 1 cut(s) 1307
HhaI GCGC 1 cut(s) 800
Hin1II CATG 7 cut(s) 55, 269, 842, 916, 944, 1097, 1172
Hin6I GCGC 1 cut(s) 798
HinP1I GCGC 1 cut(s) 798
HincII GTYRAC 2 cut(s) 598, 862
HindII GTYRAC 2 cut(s) 598, 862
HindIII AAGCTT 1 cut(s) 843
HinfI GANTC 4 cut(s) 57, 228, 410, 1031
HpaI GTTAAC 1 cut(s) 862
HpaII CCGG 1 cut(s) 1283
HphI GGTGA 4 cut(s) 210, 252, 1184, 1242
Hpy166II GTNNAC 2 cut(s) 598, 862
Hpy188I TCNGA 6 cut(s) 24, 106, 757, 1014, 1083, 1114
Hpy8I GTNNAC 2 cut(s) 598, 862
HpyAV CCTTC 7 cut(s) 101, 351, 599, 752, 792, 917, 1119
HpyCH4III ACNGT 1 cut(s) 191
HpyCH4IV ACGT 1 cut(s) 814
HpyCH4V TGCA 7 cut(s) 35, 127, 474, 958, 1069, 1093, 1123
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 371, 797, 817, 1099
HpyF3I CTNAG 9 cut(s) 44, 250, 669, 687, 756, 894, 1224, 1260, 1314
HpySE526I ACGT 1 cut(s) 814
Hsp92II CATG 7 cut(s) 55, 269, 842, 916, 944, 1097, 1172
HspAI GCGC 1 cut(s) 798
KspAI GTTAAC 1 cut(s) 862
Kzo9I GATC 5 cut(s) 26, 238, 613, 980, 1047
LmnI GCTCC 6 cut(s) 65, 730, 1150, 1165, 1228, 1270
Lsp1109I GCAGC 5 cut(s) 19, 52, 484, 815, 1077
LweI GCATC 4 cut(s) 374, 553, 1177, 1217
MabI ACCWGGT 1 cut(s) 636
MaeI CTAG 2 cut(s) 708, 732
MaeII ACGT 1 cut(s) 814
MaeIII GTNAC 8 cut(s) 47, 173, 203, 584, 607, 772, 950, 1248
MalI GATC 5 cut(s) 28, 240, 615, 982, 1049
MbiI CCGCTC 1 cut(s) 1231
MboI GATC 5 cut(s) 26, 238, 613, 980, 1047
MboII GAAGA 4 cut(s) 66, 233, 327, 515
MflI RGATCY 2 cut(s) 238, 613
MhlI GDGCHC 2 cut(s) 70, 1155
MluCI AATT 3 cut(s) 549, 658, 1145
MlyI GAGTC 2 cut(s) 66, 1025
MmeI TCCRAC 1 cut(s) 803
MroXI GAANNNNTTC 2 cut(s) 717, 741
MseI TTAA 3 cut(s) 179, 441, 861
MslI CAYNNNNRTG 1 cut(s) 917
MspA1I CMGCKG 2 cut(s) 32, 254
MspI CCGG 1 cut(s) 1283
MspR9I CCNGG 3 cut(s) 400, 420, 638
Mva1269I GAATGC 1 cut(s) 489
MvaI CCWGG 3 cut(s) 400, 420, 638
MwoI GCNNNNNNNGC 5 cut(s) 14, 371, 797, 817, 1099
NdeII GATC 5 cut(s) 26, 238, 613, 980, 1047
NlaIII CATG 7 cut(s) 55, 269, 842, 916, 944, 1097, 1172
NlaIV GGNNCC 6 cut(s) 397, 425, 621, 642, 1152, 1266
NmeAIII GCCGAG 1 cut(s) 767
NmuCI GTSAC 6 cut(s) 47, 173, 203, 584, 950, 1248
PagI TCATGA 3 cut(s) 265, 838, 912
PceI AGGCCT 1 cut(s) 157
PctI GAATGC 1 cut(s) 489
PdmI GAANNNNTTC 2 cut(s) 717, 741
PfeI GAWTC 2 cut(s) 228, 410
PkrI GCNGC 7 cut(s) 34, 42, 499, 802, 805, 1089, 1092
PleI GAGTC 2 cut(s) 65, 1025
PpsI GAGTC 2 cut(s) 65, 1025
Ppu21I YACGTR 1 cut(s) 815
Psp6I CCWGG 3 cut(s) 398, 418, 636
PspGI CCWGG 3 cut(s) 398, 418, 636
PspN4I GGNNCC 6 cut(s) 397, 425, 621, 642, 1152, 1266
PspPI GGNCC 1 cut(s) 7
PsrI GAACNNNNNNTAC 2 cut(s) 1285, 1317
PstI CTGCAG 1 cut(s) 1071
PsuI RGATCY 2 cut(s) 238, 613
PvuII CAGCTG 2 cut(s) 32, 254
RsaI GTAC 1 cut(s) 406
RsaNI GTAC 1 cut(s) 405
RseI CAYNNNNRTG 1 cut(s) 917
SaqAI TTAA 3 cut(s) 179, 441, 861
SatI GCNGC 7 cut(s) 33, 41, 498, 801, 804, 1088, 1091
Sau3AI GATC 5 cut(s) 26, 238, 613, 980, 1047
Sau96I GGNCC 1 cut(s) 7
SchI GAGTC 2 cut(s) 66, 1025
ScrFI CCNGG 3 cut(s) 400, 420, 638
SduI GDGCHC 2 cut(s) 70, 1155
SexAI ACCWGGT 1 cut(s) 636
SfaNI GCATC 4 cut(s) 374, 553, 1177, 1217
SfcI CTRYAG 3 cut(s) 234, 360, 1067
SmiMI CAYNNNNRTG 1 cut(s) 917
SmlI CTYRAG 2 cut(s) 304, 1103
SmoI CTYRAG 2 cut(s) 304, 1103
Sse9I AATT 3 cut(s) 549, 658, 1145
SseBI AGGCCT 1 cut(s) 157
SsiI CCGC 4 cut(s) 10, 801, 1087, 1231
SspMI CTAG 2 cut(s) 708, 732
StuI AGGCCT 1 cut(s) 157
StyD4I CCNGG 3 cut(s) 398, 418, 636
StyI CCWWGG 3 cut(s) 1035, 1158, 1269
TaaI ACNGT 1 cut(s) 191
TaiI ACGT 1 cut(s) 817
TaqI TCGA 2 cut(s) 146, 1044
TasI AATT 3 cut(s) 549, 658, 1145
TauI GCSGC 2 cut(s) 803, 1090
TfiI GAWTC 2 cut(s) 228, 410
Tru1I TTAA 3 cut(s) 179, 441, 861
Tru9I TTAA 3 cut(s) 179, 441, 861
TscAI CASTG 2 cut(s) 196, 1057
TseFI GTSAC 6 cut(s) 47, 173, 203, 584, 950, 1248
TseI GCWGC 5 cut(s) 32, 40, 497, 803, 1090
Tsp45I GTSAC 6 cut(s) 47, 173, 203, 584, 950, 1248
TspDTI ATGAA 8 cut(s) 66, 204, 280, 693, 827, 855, 929, 1110
TspRI CASTG 2 cut(s) 196, 1057
XapI RAATTY 1 cut(s) 658
XbaI TCTAGA 2 cut(s) 707, 731
XcmI CCANNNNNNNNNTGG 1 cut(s) 819
XmnI GAANNNNTTC 2 cut(s) 717, 741
XspI CTAG 2 cut(s) 708, 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.