Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0007621

Physical Location & Seq

Genomic Coordinates Forward (+)

29316031 .. 29318565

Gene Structure 2535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0185000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGGAGGCTGGGGACAAGCTGTGACTGTTTGGTGCGGTCGAACCTCATCTAGTCATGCTCTTCCTTCTAGGGTTTTATTGGATCAGCAAAACCTATGGGATAGCGGATGCTGCTGCTGGAACAATCGAAGTCTGAGAGATCTGGCCTCATCAGATCTGGGAAGTGGGTTTTCTCTAGGACTACGGGAGTGGTGGATCTGTGCTGATTTGGGCAAAGGCAGTAACTTGAGAAGAATCCTCAGGGGAAGAAGTCCAGATCTGATTATGTTCTTTCTGCACTTTCAGAGATTAAGAGTGATCTGGATCGTAGGTGCTACTGGTCATATTAGGAGACAAGGTAGTGCTTCTGTTGCAATGACAGATGGAGAAACTGGTTATACTCACTACCTGATCCTCTTCGTAGCCTTGCAGGACCTGTGCCAGAGATTACATGGGAGTGAGTTTTCTTTACTGTGGCTTTGCCAATATCAAAATTCTGAAGTCTTTGTAAATGTAAAACTAGTTGAGGAGCCAGAGCTGCAGAGGAGTTTTCCTGTGTTTGCTTTAGAGGAAATTTTGGAATCTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007275 GO:0007623 GO:0008150 GO:0009267 GO:0009314 GO:0009416 GO:0009555 GO:0009605 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009987 GO:0009991 GO:0010468 GO:0010556 GO:0016036 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0031667 GO:0031668 GO:0031669 GO:0032501 GO:0032502 GO:0033554 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048229 GO:0048511 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0055063 GO:0055081 GO:0060255 GO:0065007 GO:0065008 GO:0071214 GO:0071478 GO:0071482 GO:0071484 GO:0071486 GO:0071496 GO:0072505 GO:0080090 GO:0098771 GO:0104004 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_CC_LHEQLE Myb_DNA-binding

Protein Analysis

189

Amino Acids

21.47

Weight (kDa)

6.94

Isoelectric Point (pI)

60.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007621)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G28610
fragaria_vesca	FvH4_2g20730 FvH4_2g20730
malus_domestica	MD00G1060900.v1.1 MD05G1189400.v1.1
prunus_persica	Prupe.8G216800_v2.0.a1 Prupe.8G216800_v2.0.a1 Prupe.8G216800_v2.0.a1 Prupe.8G216800_v2.0.a1 Prupe.8G216800_v2.0.a1
pyrus_communis	pycom05g17450 pycom10g15330
rosa_chinensis	RchiOBHm_Chr6g0286911
rosa_laevigata	RLG00000012527
rosa_multiflora	Rmu_sc0002520.1_g000011
rosa_roxburghii	Rroxscaffold_7G00181810
rosa_rugosa	Rorug06G0184800 Rorug06G0184900 Rorug06G0185000
rosa_samantha	Rh6AG296700 Rh6BG301300 Rh6CG308800 Rh6DG292600
rosa_wichuraiana	Rw6G025600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	36, 105
AclWI	GGATC	4 cut(s)	90, 203, 311, 385
AcsI	RAATTY	2 cut(s)	472, 552
AcuI	CTGAAG	1 cut(s)	498
AhlI	ACTAGT	1 cut(s)	499
AluBI	AGCT	2 cut(s)	20, 517
AluI	AGCT	2 cut(s)	20, 517
Alw26I	GTCTC	1 cut(s)	325
AlwI	GGATC	4 cut(s)	90, 203, 311, 385
AlwNI	CAGNNNCTG	1 cut(s)	415
AoxI	GGCC	1 cut(s)	144
ApeKI	GCWGC	3 cut(s)	111, 114, 517
ApoI	RAATTY	2 cut(s)	472, 552
AspS9I	GGNCC	1 cut(s)	412
AvaII	GGWCC	1 cut(s)	412
AxyI	CCTNAGG	1 cut(s)	239
BbvI	GCAGC	3 cut(s)	98, 101, 504
BccI	CCATC	1 cut(s)	356
BcoDI	GTCTC	1 cut(s)	325
BcuI	ACTAGT	1 cut(s)	499
BfaI	CTAG	4 cut(s)	51, 69, 176, 500
BfmI	CTRYAG	1 cut(s)	518
BglII	AGATCT	3 cut(s)	139, 154, 256
BisI	GCNGC	3 cut(s)	112, 115, 518
BlsI	GCNGC	3 cut(s)	113, 116, 519
Bme18I	GGWCC	1 cut(s)	412
BmgT120I	GGNCC	1 cut(s)	412
BmiI	GGNNCC	1 cut(s)	510
BmsI	GCATC	1 cut(s)	98
BpuEI	CTTGAG	1 cut(s)	247
BsaBI	GATNNNNATC	1 cut(s)	302
BsaXI	ACNNNNNCTCC	2 cut(s)	322, 352
Bse1I	ACTGG	2 cut(s)	322, 376
Bse21I	CCTNAGG	1 cut(s)	239
Bse3DI	GCAATG	1 cut(s)	360
Bse8I	GATNNNNATC	1 cut(s)	302
BseGI	GGATG	1 cut(s)	113
BseJI	GATNNNNATC	1 cut(s)	302
BseMI	GCAATG	1 cut(s)	360
BseMII	CTCAG	2 cut(s)	125, 253
BseNI	ACTGG	2 cut(s)	322, 376
BseRI	GAGGAG	2 cut(s)	521, 538
BseXI	GCAGC	3 cut(s)	98, 101, 504
BseYI	CCCAGC	1 cut(s)	9
BsgI	GTGCAG	1 cut(s)	260
Bsh1285I	CGRYCG	1 cut(s)	40
BshFI	GGCC	1 cut(s)	146
BsiEI	CGRYCG	1 cut(s)	40
BslFI	GGGAC	1 cut(s)	27
BsmAI	GTCTC	1 cut(s)	325
BsmFI	GGGAC	1 cut(s)	27
BsnI	GGCC	1 cut(s)	146
Bsp143I	GATC	8 cut(s)	82, 139, 154, 195, 256, 297, 303, 390
BspACI	CCGC	2 cut(s)	36, 105
BspANI	GGCC	1 cut(s)	146
BspCNI	CTCAG	2 cut(s)	126, 252
BspLI	GGNNCC	1 cut(s)	510
BspMAI	CTGCAG	1 cut(s)	522
BspPI	GGATC	4 cut(s)	90, 203, 311, 385
BspQI	GCTCTTC	1 cut(s)	66
BsrDI	GCAATG	1 cut(s)	360
BsrI	ACTGG	2 cut(s)	322, 376
BssMI	GATC	8 cut(s)	82, 139, 154, 195, 256, 297, 303, 390
Bst4CI	ACNGT	2 cut(s)	28, 453
Bst6I	CTCTTC	2 cut(s)	66, 401
BstDEI	CTNAG	2 cut(s)	134, 239
BstF5I	GGATG	1 cut(s)	113
BstKTI	GATC	8 cut(s)	85, 142, 157, 198, 259, 300, 306, 393
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	8 cut(s)	82, 139, 154, 195, 256, 297, 303, 390
BstMCI	CGRYCG	1 cut(s)	40
BstMWI	GCNNNNNNNGC	3 cut(s)	111, 350, 517
BstSFI	CTRYAG	1 cut(s)	518
BstV1I	GCAGC	3 cut(s)	98, 101, 504
BstX2I	RGATCY	4 cut(s)	139, 154, 195, 256
BstYI	RGATCY	4 cut(s)	139, 154, 195, 256
Bsu36I	CCTNAGG	1 cut(s)	239
BsuRI	GGCC	1 cut(s)	146
BtsCI	GGATG	1 cut(s)	113
CaiI	CAGNNNCTG	1 cut(s)	415
Cfr13I	GGNCC	1 cut(s)	412
CviAII	CATG	2 cut(s)	56, 431
CviJI	RGCY	7 cut(s)	9, 20, 146, 404, 457, 511, 517
CviKI_1	RGCY	7 cut(s)	9, 20, 146, 404, 457, 511, 517
DdeI	CTNAG	2 cut(s)	134, 239
DpnI	GATC	8 cut(s)	84, 141, 156, 197, 258, 299, 305, 392
DpnII	GATC	8 cut(s)	82, 139, 154, 195, 256, 297, 303, 390
Eam1104I	CTCTTC	2 cut(s)	66, 401
EarI	CTCTTC	2 cut(s)	66, 401
Eco47I	GGWCC	1 cut(s)	412
Eco57I	CTGAAG	1 cut(s)	498
Eco81I	CCTNAGG	1 cut(s)	239
EcoO109I	RGGNCCY	1 cut(s)	412
FaeI	CATG	2 cut(s)	59, 434
FaiI	YATR	6 cut(s)	57, 97, 266, 324, 378, 432
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	2 cut(s)	55, 430
Fnu4HI	GCNGC	3 cut(s)	112, 115, 518
FokI	GGATG	1 cut(s)	120
Fsp4HI	GCNGC	3 cut(s)	112, 115, 518
FspBI	CTAG	4 cut(s)	51, 69, 176, 500
GluI	GCNGC	3 cut(s)	112, 115, 518
GsaI	CCCAGC	1 cut(s)	13
HaeIII	GGCC	1 cut(s)	146
Hin1II	CATG	2 cut(s)	59, 434
HinfI	GANTC	2 cut(s)	234, 560
Hpy188I	TCNGA	5 cut(s)	135, 154, 261, 285, 478
Hpy188III	TCNNGA	2 cut(s)	254, 301
HpyAV	CCTTC	1 cut(s)	75
HpyCH4III	ACNGT	2 cut(s)	28, 453
HpyCH4V	TGCA	4 cut(s)	277, 353, 409, 520
HpyF10VI	GCNNNNNNNGC	3 cut(s)	111, 350, 517
HpyF3I	CTNAG	2 cut(s)	134, 239
Hsp92II	CATG	2 cut(s)	59, 434
Kzo9I	GATC	8 cut(s)	82, 139, 154, 195, 256, 297, 303, 390
LguI	GCTCTTC	1 cut(s)	66
LmnI	GCTCC	1 cut(s)	508
Lsp1109I	GCAGC	3 cut(s)	98, 101, 504
LweI	GCATC	1 cut(s)	98
MaeI	CTAG	4 cut(s)	51, 69, 176, 500
MaeIII	GTNAC	2 cut(s)	22, 221
MalI	GATC	8 cut(s)	84, 141, 156, 197, 258, 299, 305, 392
MboI	GATC	8 cut(s)	82, 139, 154, 195, 256, 297, 303, 390
MboII	GAAGA	4 cut(s)	53, 243, 258, 388
MflI	RGATCY	4 cut(s)	139, 154, 195, 256
MluCI	AATT	2 cut(s)	472, 552
MnlI	CCTC	7 cut(s)	55, 157, 248, 404, 499, 516, 541
MseI	TTAA	1 cut(s)	290
MslI	CAYNNNNRTG	1 cut(s)	435
MwoI	GCNNNNNNNGC	3 cut(s)	111, 350, 517
NdeII	GATC	8 cut(s)	82, 139, 154, 195, 256, 297, 303, 390
NlaIII	CATG	2 cut(s)	59, 434
NlaIV	GGNNCC	1 cut(s)	510
NmuCI	GTSAC	1 cut(s)	22
PciSI	GCTCTTC	1 cut(s)	66
PfeI	GAWTC	2 cut(s)	234, 560
PkrI	GCNGC	3 cut(s)	113, 116, 519
PpuMI	RGGWCCY	1 cut(s)	412
Psp5II	RGGWCCY	1 cut(s)	412
PspFI	CCCAGC	1 cut(s)	9
PspN4I	GGNNCC	1 cut(s)	510
PspPI	GGNCC	1 cut(s)	412
PspPPI	RGGWCCY	1 cut(s)	412
PstI	CTGCAG	1 cut(s)	522
PstNI	CAGNNNCTG	1 cut(s)	415
PsuI	RGATCY	4 cut(s)	139, 154, 195, 256
RseI	CAYNNNNRTG	1 cut(s)	435
SapI	GCTCTTC	1 cut(s)	66
SaqAI	TTAA	1 cut(s)	290
SatI	GCNGC	3 cut(s)	112, 115, 518
Sau3AI	GATC	8 cut(s)	82, 139, 154, 195, 256, 297, 303, 390
Sau96I	GGNCC	1 cut(s)	412
SetI	ASST	8 cut(s)	22, 47, 96, 313, 340, 390, 417, 519
SfaNI	GCATC	1 cut(s)	98
SfcI	CTRYAG	1 cut(s)	518
SinI	GGWCC	1 cut(s)	412
SmiMI	CAYNNNNRTG	1 cut(s)	435
SmlI	CTYRAG	1 cut(s)	226
SmoI	CTYRAG	1 cut(s)	226
SpeI	ACTAGT	1 cut(s)	499
Sse9I	AATT	2 cut(s)	472, 552
SsiI	CCGC	2 cut(s)	36, 105
SspMI	CTAG	4 cut(s)	51, 69, 176, 500
TaaI	ACNGT	2 cut(s)	28, 453
TaqI	TCGA	2 cut(s)	40, 127
TasI	AATT	2 cut(s)	472, 552
TfiI	GAWTC	2 cut(s)	234, 560
Tru1I	TTAA	1 cut(s)	290
Tru9I	TTAA	1 cut(s)	290
TseFI	GTSAC	1 cut(s)	22
TseI	GCWGC	3 cut(s)	111, 114, 517
Tsp45I	GTSAC	1 cut(s)	22
VpaK11BI	GGWCC	1 cut(s)	412
XapI	RAATTY	2 cut(s)	472, 552
XcmI	CCANNNNNNNNNTGG	1 cut(s)	428
XspI	CTAG	4 cut(s)	51, 69, 176, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.