RLG00000012527
MYB Family

Protein PHR1-LIKE 1-like isoform

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
Physical Location & Seq
Reverse (-)
19578596 .. 19581578
2983 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012527

Sequence Viewer

Length: 1596 bp
ATGGAGGCACGCCCTGCCATTCGGAGATCAGCTGCAAAGCAGCTTAGTCACATGGGAGTCTCTGGAGCACTATCTTCATCTTTACCAGTCCTTCAACCCTCATCGGAGGAGACGTATCCCAAGTTGCAAGACACACAACAGGTTTCAATGGAAAGGCCTGTGGAACAAGCAGGTCACTTAACATCTAACAGTGGTTTAGTTGGTCACATATTTTCATCACCATCAAGATTCTCTACAGATCTTCACTACTCATCTGTTTCACCTCATGAGAAGCAGTCAAGAAATAATCCTTTCATTTCGCAGTCCTCAAGTTCTGTGTCTATGCCATTACCACATTCTTCTCCTTCACGAGTTTTTCAATCTACAGCATCTTGTGCCTATTCCAAAGAAAACAATGGTTCCTGGGGTACAGATTCTCTGCCAGGGTTCCTTGATTTTCCTGTAAATACCCCTGTTGAGAATAGTCAAATAGAGAGCAGTAGTTGTAGTGGCATTCTGGCGGCTGAAGATATAAGTAAGCAAAATGATTGGCAGGAGTGGGCAAACCAGCTAATTACCGATGATGATGCTTTGACTTCTAACTGGAGTGACCTTCTCGTTGACAGCAATGTTACAGATCTGGAACCAAAGATGACATACCAGGTTCCCAAACCATCTTTGAATTTTTCAGCTCAGCAGTCCCAAGTTTCTCAGCAACATCCTGCTTCATCGAGAGAAATCATTTCTGCTCCATCTAGAGAAATCCTTCCTGTTCAATCTGAGGATATCATTGCTGTTACTACTCCTTCCTCGGCTAACAGTGCCGCAGCGAAGCCGCGTATGCGTTGGACACCAGAACTTCATGACGCTTTTGTGGAAGCTGTTAACCAACTCGGTGGTAGTGAAAGAGCAACTCCTAAGGGTGTGCTGAAGCTCATGAAAGTGGAAGGCTTGACTATCTATCATGTGAAAAGTCACTTGCAGAGATTACATAAACTAGCAGCAAATAGTAGCAATTGGATACAAAATAAAAAAGACTCCTTTTTGATGCTCTATTCGATTGTAGTGGGCATTTGTATATTGACCTCATTTAACATCGTATGGTGTTGTCAATGTTTTTCTGTAGGATCCTTGGAGAAAAAATTGACTCCTCTCGAAGAAATGACATCTCTAGACTTGAAAACGGGTATCGAGATCACTGAAGCTCTGCGACTGCAGATGGAAGTTCAGAAGCGGCTGCATGAACAGCTTGAGATTCAAAGAAATCTACAGTTACGAATTGAAGAACAAGGGAAGTACCTTCAAATGATGTTTGAAAAGCAATGCAAGTCAGGTGGTGACAAGCTGAATGCTTCATCATCCAGTTTGGACGATCCTTCTGCTCAGCCTTCAGAGGCAATGCAAGTTTCTCCTGATAAAAGTGAATTGGAGACCTCCAAGGTGGAGCATGGTGAGACTGAAGCTGATGCTGTCAAATCCAAAGTCGCATCAGTAGAATGTGCTGAGGAGCGGACAGGGAAGCAAAAGTCACCTGAAACTGAGGCTCCCAAGGATTGTGAGCCGGATGTTTGTATGTCCAGTTCCCAACCTCCTAAGCGTCCCAAAATCAAAGAATAA

Protein Analysis

532

Amino Acids

58.45

Weight (kDa)

5.51

Isoelectric Point (pI)

66.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 273 - 322 3e-08 Myb-like DNA-binding domain
Myb_CC_LHEQLE PF14379 390 - 436 4.9e-25 MYB-CC type transfactor, LHEQLE motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 161
AccBSI CCGCTC 1 cut(s) 1489
AccII CGCG 1 cut(s) 817
AciI CCGC 5 cut(s) 500, 804, 815, 1213, 1489
AclWI GGATC 3 cut(s) 1101, 1114, 1346
AcsI RAATTY 1 cut(s) 661
AcuI CTGAAG 5 cut(s) 525, 929, 1200, 1353, 1458
AfaI GTAC 2 cut(s) 409, 1277
AjnI CCWGG 3 cut(s) 401, 421, 639
Alw21I GWGCWC 1 cut(s) 70
Alw26I GTCTC 4 cut(s) 64, 104, 1403, 1427
AlwI GGATC 3 cut(s) 1101, 1114, 1346
AoxI GGCC 1 cut(s) 155
ApeKI GCWGC 5 cut(s) 32, 40, 806, 980, 1216
ApoI RAATTY 1 cut(s) 661
ArsI GACNNNNNNTTYG 2 cut(s) 1446, 1478
Asp700I GAANNNNTTC 1 cut(s) 744
AsuHPI GGTGA 5 cut(s) 210, 252, 1328, 1442, 1500
AxyI CCTNAGG 1 cut(s) 897
BamHI GGATCC 1 cut(s) 1106
BauI CACGAG 1 cut(s) 348
Bbv12I GWGCWC 1 cut(s) 70
BbvCI CCTCAGC 1 cut(s) 1482
BbvI GCAGC 5 cut(s) 19, 52, 818, 992, 1203
BccI CCATC 4 cut(s) 229, 661, 739, 1192
BcgI CGANNNNNNTGC 4 cut(s) 548, 582, 1340, 1374
BciT130I CCWGG 3 cut(s) 403, 423, 641
BciVI GTATCC 2 cut(s) 126, 993
BcoDI GTCTC 4 cut(s) 64, 104, 1403, 1427
BfaI CTAG 3 cut(s) 735, 977, 1151
BfmI CTRYAG 5 cut(s) 234, 363, 1101, 1193, 1247
BfuAI ACCTGC 1 cut(s) 161
BfuI GTATCC 2 cut(s) 126, 993
BglII AGATCT 2 cut(s) 238, 616
BisI GCNGC 9 cut(s) 33, 41, 501, 804, 807, 815, 981, 1214, 1217
BlpI GCTNAGC 2 cut(s) 672, 1362
BlsI GCNGC 9 cut(s) 34, 42, 502, 805, 808, 816, 982, 1215, 1218
Bme1390I CCNGG 3 cut(s) 403, 423, 641
BmiI GGNNCC 6 cut(s) 400, 428, 624, 645, 1108, 1524
BmrFI CCNGG 3 cut(s) 403, 423, 641
BmsI GCATC 5 cut(s) 377, 556, 1017, 1435, 1475
BpmI CTGGAG 2 cut(s) 84, 604
Bpu10I CCTNAGC 2 cut(s) 1482, 1572
Bpu1102I GCTNAGC 2 cut(s) 672, 1362
BpuEI CTTGAG 2 cut(s) 292, 1250
BsaI GGTCTC 1 cut(s) 1403
BsaJI CCNNGG 6 cut(s) 402, 422, 789, 1110, 1416, 1527
BsaXI ACNNNNNCTCC 4 cut(s) 98, 128, 1507, 1537
Bse1I ACTGG 4 cut(s) 86, 587, 1341, 1557
Bse21I CCTNAGG 1 cut(s) 897
Bse3DI GCAATG 4 cut(s) 613, 768, 1307, 1383
BseBI CCWGG 3 cut(s) 403, 423, 641
BseDI CCNNGG 6 cut(s) 402, 422, 789, 1110, 1416, 1527
BseGI GGATG 3 cut(s) 697, 1337, 1549
BseMI GCAATG 4 cut(s) 613, 768, 1307, 1383
BseMII CTCAG 6 cut(s) 686, 704, 750, 1376, 1473, 1509
BseNI ACTGG 4 cut(s) 86, 587, 1341, 1557
BseRI GAGGAG 3 cut(s) 122, 1119, 1499
BseXI GCAGC 5 cut(s) 19, 52, 818, 992, 1203
Bsh1236I CGCG 1 cut(s) 817
BshFI GGCC 1 cut(s) 157
BsiHKAI GWGCWC 1 cut(s) 70
BsiSI CCGG 1 cut(s) 1541
BslFI GGGAC 2 cut(s) 664, 1563
BsmAI GTCTC 4 cut(s) 64, 104, 1403, 1427
BsmBI CGTCTC 1 cut(s) 104
BsmFI GGGAC 2 cut(s) 664, 1563
BsmI GAATGC 2 cut(s) 492, 1333
BsnI GGCC 1 cut(s) 157
Bso31I GGTCTC 1 cut(s) 1403
Bsp1286I GDGCHC 1 cut(s) 70
Bsp143I GATC 6 cut(s) 26, 238, 616, 1106, 1173, 1351
Bsp1720I GCTNAGC 2 cut(s) 672, 1362
BspACI CCGC 5 cut(s) 500, 804, 815, 1213, 1489
BspANI GGCC 1 cut(s) 157
BspCNI CTCAG 6 cut(s) 685, 703, 751, 1375, 1474, 1510
BspFNI CGCG 1 cut(s) 817
BspHI TCATGA 3 cut(s) 265, 841, 915
BspLI GGNNCC 6 cut(s) 400, 428, 624, 645, 1108, 1524
BspMAI CTGCAG 1 cut(s) 1197
BspMI ACCTGC 1 cut(s) 161
BspPI GGATC 3 cut(s) 1101, 1114, 1346
BspTNI GGTCTC 1 cut(s) 1403
BsrBI CCGCTC 1 cut(s) 1489
BsrDI GCAATG 4 cut(s) 613, 768, 1307, 1383
BsrI ACTGG 4 cut(s) 86, 587, 1341, 1557
BssECI CCNNGG 6 cut(s) 402, 422, 789, 1110, 1416, 1527
BssMI GATC 6 cut(s) 26, 238, 616, 1106, 1173, 1351
BssSI CACGAG 1 cut(s) 348
BssT1I CCWWGG 3 cut(s) 1110, 1416, 1527
Bst2BI CACGAG 1 cut(s) 348
Bst2UI CCWGG 3 cut(s) 403, 423, 641
Bst4CI ACNGT 3 cut(s) 191, 800, 1251
BstAPI GCANNNNNTGC 2 cut(s) 14, 374
BstC8I GCNNGC 1 cut(s) 10
BstDEI CTNAG 9 cut(s) 44, 672, 690, 759, 897, 1362, 1482, 1518, 1572
BstF5I GGATG 3 cut(s) 697, 1337, 1549
BstFNI CGCG 1 cut(s) 817
BstKTI GATC 6 cut(s) 29, 241, 619, 1109, 1176, 1354
BstMAI GTCTC 4 cut(s) 64, 104, 1403, 1427
BstMBI GATC 6 cut(s) 26, 238, 616, 1106, 1173, 1351
BstMWI GCNNNNNNNGC 5 cut(s) 14, 374, 800, 820, 1225
BstNI CCWGG 3 cut(s) 403, 423, 641
BstSCI CCNGG 3 cut(s) 401, 421, 639
BstSFI CTRYAG 5 cut(s) 234, 363, 1101, 1193, 1247
BstUI CGCG 1 cut(s) 817
BstV1I GCAGC 5 cut(s) 19, 52, 818, 992, 1203
BstX2I RGATCY 3 cut(s) 238, 616, 1106
BstXI CCANNNNNNTGG 1 cut(s) 875
BstYI RGATCY 3 cut(s) 238, 616, 1106
Bsu36I CCTNAGG 1 cut(s) 897
BsuI GTATCC 2 cut(s) 126, 993
BsuRI GGCC 1 cut(s) 157
BtsCI GGATG 3 cut(s) 697, 1337, 1549
BtsIMutI CAGTG 3 cut(s) 196, 805, 1176
BveI ACCTGC 1 cut(s) 161
Cac8I GCNNGC 1 cut(s) 10
CciI TCATGA 3 cut(s) 265, 841, 915
CseI GACGC 2 cut(s) 854, 1565
CsiI ACCWGGT 1 cut(s) 639
Csp6I GTAC 2 cut(s) 408, 1276
CspCI CAANNNNNGTGG 2 cut(s) 1294, 1329
CviAII CATG 7 cut(s) 52, 266, 842, 916, 944, 1220, 1427
CviQI GTAC 2 cut(s) 408, 1276
DdeI CTNAG 9 cut(s) 44, 672, 690, 759, 897, 1362, 1482, 1518, 1572
DpnI GATC 6 cut(s) 28, 240, 618, 1108, 1175, 1353
DpnII GATC 6 cut(s) 26, 238, 616, 1106, 1173, 1351
Eco130I CCWWGG 3 cut(s) 1110, 1416, 1527
Eco147I AGGCCT 1 cut(s) 157
Eco31I GGTCTC 1 cut(s) 1403
Eco32I GATATC 1 cut(s) 766
Eco57I CTGAAG 5 cut(s) 525, 929, 1200, 1353, 1458
Eco81I CCTNAGG 1 cut(s) 897
EcoRII CCWGG 3 cut(s) 401, 421, 639
EcoRV GATATC 1 cut(s) 766
EcoT14I CCWWGG 3 cut(s) 1110, 1416, 1527
ErhI CCWWGG 3 cut(s) 1110, 1416, 1527
Esp3I CGTCTC 1 cut(s) 104
FaeI CATG 7 cut(s) 55, 269, 845, 919, 947, 1223, 1430
FaqI GGGAC 2 cut(s) 664, 1563
FatI CATG 7 cut(s) 51, 265, 841, 915, 943, 1219, 1426
Fnu4HI GCNGC 9 cut(s) 33, 41, 501, 804, 807, 815, 981, 1214, 1217
FokI GGATG 3 cut(s) 684, 1324, 1556
Fsp4HI GCNGC 9 cut(s) 33, 41, 501, 804, 807, 815, 981, 1214, 1217
FspBI CTAG 3 cut(s) 735, 977, 1151
GluI GCNGC 9 cut(s) 33, 41, 501, 804, 807, 815, 981, 1214, 1217
GsuI CTGGAG 2 cut(s) 84, 604
HaeIII GGCC 1 cut(s) 157
HapII CCGG 1 cut(s) 1541
HgaI GACGC 2 cut(s) 854, 1565
Hin1II CATG 7 cut(s) 55, 269, 845, 919, 947, 1223, 1430
HincII GTYRAC 2 cut(s) 601, 865
HindII GTYRAC 2 cut(s) 601, 865
HinfI GANTC 6 cut(s) 57, 228, 413, 1016, 1126, 1234
HpaI GTTAAC 1 cut(s) 865
HpaII CCGG 1 cut(s) 1541
HphI GGTGA 5 cut(s) 210, 252, 1328, 1442, 1500
Hpy166II GTNNAC 2 cut(s) 601, 865
Hpy188I TCNGA 5 cut(s) 24, 106, 760, 1209, 1372
Hpy8I GTNNAC 2 cut(s) 601, 865
HpyAV CCTTC 9 cut(s) 101, 354, 602, 755, 795, 920, 1289, 1365, 1377
HpyCH4III ACNGT 3 cut(s) 191, 800, 1251
HpyCH4IV ACGT 1 cut(s) 113
HpyCH4V TGCA 7 cut(s) 35, 127, 961, 1195, 1219, 1305, 1381
HpyF10VI GCNNNNNNNGC 5 cut(s) 14, 374, 800, 820, 1225
HpyF3I CTNAG 9 cut(s) 44, 672, 690, 759, 897, 1362, 1482, 1518, 1572
HpySE526I ACGT 1 cut(s) 113
Hsp92II CATG 7 cut(s) 55, 269, 845, 919, 947, 1223, 1430
KspAI GTTAAC 1 cut(s) 865
Kzo9I GATC 6 cut(s) 26, 238, 616, 1106, 1173, 1351
LmnI GCTCC 5 cut(s) 65, 733, 1423, 1486, 1528
Lsp1109I GCAGC 5 cut(s) 19, 52, 818, 992, 1203
LweI GCATC 5 cut(s) 377, 556, 1017, 1435, 1475
MabI ACCWGGT 1 cut(s) 639
MaeI CTAG 3 cut(s) 735, 977, 1151
MaeII ACGT 1 cut(s) 113
MalI GATC 6 cut(s) 28, 240, 618, 1108, 1175, 1353
MbiI CCGCTC 1 cut(s) 1489
MboI GATC 6 cut(s) 26, 238, 616, 1106, 1173, 1351
MboII GAAGA 6 cut(s) 66, 233, 330, 518, 1148, 1274
MfeI CAATTG 1 cut(s) 994
MflI RGATCY 3 cut(s) 238, 616, 1106
MhlI GDGCHC 1 cut(s) 70
MluCI AATT 6 cut(s) 552, 661, 994, 1121, 1257, 1403
MlyI GAGTC 3 cut(s) 66, 1010, 1120
MmeI TCCRAC 1 cut(s) 806
MroXI GAANNNNTTC 1 cut(s) 744
MseI TTAA 3 cut(s) 179, 864, 1071
MslI CAYNNNNRTG 1 cut(s) 920
MspA1I CMGCKG 1 cut(s) 32
MspI CCGG 1 cut(s) 1541
MspR9I CCNGG 3 cut(s) 403, 423, 641
MunI CAATTG 1 cut(s) 994
Mva1269I GAATGC 2 cut(s) 492, 1333
MvaI CCWGG 3 cut(s) 403, 423, 641
MvnI CGCG 1 cut(s) 817
MwoI GCNNNNNNNGC 5 cut(s) 14, 374, 800, 820, 1225
NdeII GATC 6 cut(s) 26, 238, 616, 1106, 1173, 1351
NlaIII CATG 7 cut(s) 55, 269, 845, 919, 947, 1223, 1430
NlaIV GGNNCC 6 cut(s) 400, 428, 624, 645, 1108, 1524
NmeAIII GCCGAG 1 cut(s) 770
NmuCI GTSAC 7 cut(s) 47, 173, 203, 587, 953, 1316, 1506
PagI TCATGA 3 cut(s) 265, 841, 915
PceI AGGCCT 1 cut(s) 157
PcsI WCGNNNNNNNCGW 1 cut(s) 110
PctI GAATGC 2 cut(s) 492, 1333
PdmI GAANNNNTTC 1 cut(s) 744
PfeI GAWTC 3 cut(s) 228, 413, 1234
PkrI GCNGC 9 cut(s) 34, 42, 502, 805, 808, 816, 982, 1215, 1218
PleI GAGTC 3 cut(s) 65, 1010, 1120
PpsI GAGTC 3 cut(s) 65, 1010, 1120
Psp6I CCWGG 3 cut(s) 401, 421, 639
PspGI CCWGG 3 cut(s) 401, 421, 639
PspN4I GGNNCC 6 cut(s) 400, 428, 624, 645, 1108, 1524
PsrI GAACNNNNNNTAC 2 cut(s) 1543, 1575
PstI CTGCAG 1 cut(s) 1197
PsuI RGATCY 3 cut(s) 238, 616, 1106
PvuII CAGCTG 1 cut(s) 32
RsaI GTAC 2 cut(s) 409, 1277
RsaNI GTAC 2 cut(s) 408, 1276
RseI CAYNNNNRTG 1 cut(s) 920
SaqAI TTAA 3 cut(s) 179, 864, 1071
SatI GCNGC 9 cut(s) 33, 41, 501, 804, 807, 815, 981, 1214, 1217
Sau3AI GATC 6 cut(s) 26, 238, 616, 1106, 1173, 1351
SchI GAGTC 3 cut(s) 66, 1010, 1120
ScrFI CCNGG 3 cut(s) 403, 423, 641
SduI GDGCHC 1 cut(s) 70
SexAI ACCWGGT 1 cut(s) 639
SfaNI GCATC 5 cut(s) 377, 556, 1017, 1435, 1475
SfcI CTRYAG 5 cut(s) 234, 363, 1101, 1193, 1247
SmiMI CAYNNNNRTG 1 cut(s) 920
SmlI CTYRAG 2 cut(s) 307, 1229
SmoI CTYRAG 2 cut(s) 307, 1229
Sse9I AATT 6 cut(s) 552, 661, 994, 1121, 1257, 1403
SseBI AGGCCT 1 cut(s) 157
SsiI CCGC 5 cut(s) 500, 804, 815, 1213, 1489
SspMI CTAG 3 cut(s) 735, 977, 1151
StuI AGGCCT 1 cut(s) 157
StyD4I CCNGG 3 cut(s) 401, 421, 639
StyI CCWWGG 3 cut(s) 1110, 1416, 1527
TaaI ACNGT 3 cut(s) 191, 800, 1251
TaiI ACGT 1 cut(s) 116
TaqI TCGA 4 cut(s) 710, 1037, 1134, 1170
TasI AATT 6 cut(s) 552, 661, 994, 1121, 1257, 1403
TauI GCSGC 4 cut(s) 503, 806, 817, 1216
TfiI GAWTC 3 cut(s) 228, 413, 1234
Tru1I TTAA 3 cut(s) 179, 864, 1071
Tru9I TTAA 3 cut(s) 179, 864, 1071
TscAI CASTG 3 cut(s) 196, 805, 1183
TseFI GTSAC 7 cut(s) 47, 173, 203, 587, 953, 1316, 1506
TseI GCWGC 5 cut(s) 32, 40, 806, 980, 1216
Tsp45I GTSAC 7 cut(s) 47, 173, 203, 587, 953, 1316, 1506
TspDTI ATGAA 8 cut(s) 66, 204, 283, 696, 830, 932, 1236, 1323
TspRI CASTG 3 cut(s) 196, 805, 1183
XapI RAATTY 1 cut(s) 661
XbaI TCTAGA 2 cut(s) 734, 1150
XmnI GAANNNNTTC 1 cut(s) 744
XspI CTAG 3 cut(s) 735, 977, 1151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.