AT4G31115

Protein of unknown function (DUF1997)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0009176
Physical Location & Seq
Forward (+)
15130075 .. 15132035
1961 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G31115.1

Sequence Viewer

Length: 753 bp
ATGGATATTGGGATTAGAAACGGATGGAGAACTCCGAAGACTTCAGAAAGCTCTGGATCTAATTTCCTGGGTTTGCTTAGATCCTACCCTAACACCATCCCCAGGGAGAGAATTCATATGGGTAATGTTCATAGTGGCAAAAGAGCAATGGTGATTTCTAGTTTAAAGAAAGCGAATATCTCTGCTTCGAGGAAGCAGAGAATTAAGCTAGAGATTAATGGAGAAAAGGAGCTGACTTTCAGTGAGTTTTTGAAACACCCATCTGGCATGGAGGCTGTGATCAACGCAAAGGCTTTGCAGAGTTACCATTTAGTTGATGATAGTGATGATACTTACAGATGTACATTGCCAAAAGTTCAGTTAATGAGTTTTGAAGTTTATCCAGTACTGGTTTTAAGGGTCACTCCCACACAGGAAGATTGTACAGTTGAGCTGCTTTCCTGCAAGTTGGAAGGATCAGAGTTATTGGAGAACCAAAGTGAAAGGTTTTCAGCAATAATGACAAACTGCATGACTTGGAACATGGAACATCCAGAGCCATTTTTGGAAGTTGACGTGAGATTGAATGTCACTCTAGAGATCTCAACGCGACCGTTCACAATGCTTCCAGTATCAGCTGTTGAGGCTCCTGGGAATCTAGTAATGCAGACACTGGTCGATACACTGGTTCCCCTTCTGCTTCAGCAATTACTTAAAGATTACGACGAATGGATTAAAAAACAGCAACGGAACTCCTTAAACGCAACTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1997

Protein Analysis

250

Amino Acids

28.34

Weight (kDa)

6.24

Isoelectric Point (pI)

42.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1997 PF09366 79 - 237 1.1e-36 Protein of unknown function (DUF1997)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 589
AclWI GGATC 3 cut(s) 64, 75, 463
AcsI RAATTY 1 cut(s) 111
AcuI CTGAAG 2 cut(s) 27, 665
AfaI GTAC 3 cut(s) 343, 387, 424
AfiI CCNNNNNNNGG 1 cut(s) 102
AgsI TTSAA 3 cut(s) 253, 374, 565
AjiI CACGTC 1 cut(s) 556
AjnI CCWGG 3 cut(s) 66, 101, 628
AluBI AGCT 5 cut(s) 51, 208, 232, 433, 617
AluI AGCT 5 cut(s) 51, 208, 232, 433, 617
AlwI GGATC 3 cut(s) 64, 75, 463
AlwNI CAGNNNCTG 1 cut(s) 652
ApeKI GCWGC 1 cut(s) 433
ApoI RAATTY 1 cut(s) 111
AseI ATTAAT 1 cut(s) 216
AsuHPI GGTGA 1 cut(s) 163
BaeI ACNNNNGTAYC 2 cut(s) 651, 684
BbsI GAAGAC 1 cut(s) 44
BbvI GCAGC 1 cut(s) 420
BccI CCATC 3 cut(s) 18, 104, 268
BciT130I CCWGG 3 cut(s) 68, 103, 630
BclI TGATCA 1 cut(s) 279
BfaI CTAG 4 cut(s) 159, 209, 575, 638
BglII AGATCT 1 cut(s) 579
BisI GCNGC 1 cut(s) 434
BlsI GCNGC 1 cut(s) 435
BmcAI AGTACT 1 cut(s) 387
Bme1390I CCNGG 3 cut(s) 68, 103, 630
BmgBI CACGTC 1 cut(s) 556
BmiI GGNNCC 2 cut(s) 627, 669
BmrFI CCNGG 3 cut(s) 68, 103, 630
BoxI GACNNNNGTC 1 cut(s) 653
BpiI GAAGAC 1 cut(s) 44
BsaJI CCNNGG 4 cut(s) 67, 101, 102, 629
Bsc4I CCNNNNNNNGG 1 cut(s) 102
Bse1I ACTGG 5 cut(s) 383, 393, 608, 657, 669
Bse3DI GCAATG 2 cut(s) 153, 344
BseBI CCWGG 3 cut(s) 68, 103, 630
BseDI CCNNGG 4 cut(s) 67, 101, 102, 629
BseGI GGATG 3 cut(s) 29, 96, 529
BseLI CCNNNNNNNGG 1 cut(s) 102
BseMI GCAATG 2 cut(s) 153, 344
BseNI ACTGG 5 cut(s) 383, 393, 608, 657, 669
BseXI GCAGC 1 cut(s) 420
Bsh1236I CGCG 1 cut(s) 589
Bsh1285I CGRYCG 1 cut(s) 593
BsiEI CGRYCG 1 cut(s) 593
BslI CCNNNNNNNGG 1 cut(s) 102
Bsp1407I TGTACA 2 cut(s) 341, 422
Bsp143I GATC 5 cut(s) 56, 80, 279, 455, 579
BspFNI CGCG 1 cut(s) 589
BspLI GGNNCC 2 cut(s) 627, 669
BspPI GGATC 3 cut(s) 64, 75, 463
BsrDI GCAATG 2 cut(s) 153, 344
BsrGI TGTACA 2 cut(s) 341, 422
BsrI ACTGG 5 cut(s) 383, 393, 608, 657, 669
BssECI CCNNGG 4 cut(s) 67, 101, 102, 629
BssMI GATC 5 cut(s) 56, 80, 279, 455, 579
Bst2UI CCWGG 3 cut(s) 68, 103, 630
Bst4CI ACNGT 2 cut(s) 427, 594
BstAUI TGTACA 2 cut(s) 341, 422
BstDEI CTNAG 1 cut(s) 77
BstF5I GGATG 3 cut(s) 29, 96, 529
BstFNI CGCG 1 cut(s) 589
BstKTI GATC 5 cut(s) 59, 83, 282, 458, 582
BstMBI GATC 5 cut(s) 56, 80, 279, 455, 579
BstMCI CGRYCG 1 cut(s) 593
BstMWI GCNNNNNNNGC 1 cut(s) 623
BstNI CCWGG 3 cut(s) 68, 103, 630
BstPAI GACNNNNGTC 1 cut(s) 653
BstSCI CCNGG 3 cut(s) 66, 101, 628
BstUI CGCG 1 cut(s) 589
BstV1I GCAGC 1 cut(s) 420
BstV2I GAAGAC 1 cut(s) 44
BstX2I RGATCY 3 cut(s) 56, 80, 579
BstYI RGATCY 3 cut(s) 56, 80, 579
BtrI CACGTC 1 cut(s) 556
BtsCI GGATG 3 cut(s) 29, 96, 529
BtsIMutI CAGTG 3 cut(s) 247, 650, 662
CaiI CAGNNNCTG 1 cut(s) 652
Csp6I GTAC 3 cut(s) 342, 386, 423
CviAII CATG 3 cut(s) 268, 511, 523
CviJI RGCY 9 cut(s) 51, 208, 232, 275, 293, 433, 538, 617, 626
CviKI_1 RGCY 9 cut(s) 51, 208, 232, 275, 293, 433, 538, 617, 626
CviQI GTAC 3 cut(s) 342, 386, 423
DdeI CTNAG 1 cut(s) 77
DpnI GATC 5 cut(s) 58, 82, 281, 457, 581
DpnII GATC 5 cut(s) 56, 80, 279, 455, 579
DraI TTTAAA 1 cut(s) 165
Eco57I CTGAAG 2 cut(s) 27, 665
EcoRI GAATTC 1 cut(s) 111
EcoRII CCWGG 3 cut(s) 66, 101, 628
FaeI CATG 3 cut(s) 271, 514, 526
FaiI YATR 6 cut(s) 117, 119, 132, 269, 512, 524
FatI CATG 3 cut(s) 267, 510, 522
FauNDI CATATG 1 cut(s) 117
FbaI TGATCA 1 cut(s) 279
Fnu4HI GCNGC 1 cut(s) 434
FokI GGATG 3 cut(s) 36, 83, 516
Fsp4HI GCNGC 1 cut(s) 434
FspBI CTAG 4 cut(s) 159, 209, 575, 638
GluI GCNGC 1 cut(s) 434
Hin1II CATG 3 cut(s) 271, 514, 526
HincII GTYRAC 1 cut(s) 553
HindII GTYRAC 1 cut(s) 553
HinfI GANTC 1 cut(s) 634
HphI GGTGA 1 cut(s) 163
Hpy166II GTNNAC 2 cut(s) 553, 597
Hpy188I TCNGA 3 cut(s) 36, 46, 460
Hpy188III TCNNGA 3 cut(s) 54, 533, 575
Hpy8I GTNNAC 2 cut(s) 553, 597
Hpy99I CGWCG 1 cut(s) 707
HpyAV CCTTC 2 cut(s) 446, 683
HpyCH4III ACNGT 2 cut(s) 427, 594
HpyCH4IV ACGT 1 cut(s) 555
HpyCH4V TGCA 4 cut(s) 298, 444, 510, 646
HpyF10VI GCNNNNNNNGC 1 cut(s) 623
HpyF3I CTNAG 1 cut(s) 77
HpySE526I ACGT 1 cut(s) 555
Hsp92II CATG 3 cut(s) 271, 514, 526
Ksp22I TGATCA 1 cut(s) 279
Kzo9I GATC 5 cut(s) 56, 80, 279, 455, 579
LmnI GCTCC 2 cut(s) 229, 631
Lsp1109I GCAGC 1 cut(s) 420
MaeI CTAG 4 cut(s) 159, 209, 575, 638
MaeII ACGT 1 cut(s) 555
MaeIII GTNAC 3 cut(s) 302, 400, 568
MalI GATC 5 cut(s) 58, 82, 281, 457, 581
MboI GATC 5 cut(s) 56, 80, 279, 455, 579
MboII GAAGA 2 cut(s) 49, 428
MflI RGATCY 3 cut(s) 56, 80, 579
MluCI AATT 4 cut(s) 61, 111, 201, 686
MmeI TCCRAC 1 cut(s) 429
MnlI CCTC 3 cut(s) 183, 265, 616
MseI TTAA 9 cut(s) 164, 204, 216, 362, 395, 693, 714, 737, 751
MspA1I CMGCKG 1 cut(s) 617
MspR9I CCNGG 3 cut(s) 68, 103, 630
MvaI CCWGG 3 cut(s) 68, 103, 630
MvnI CGCG 1 cut(s) 589
MwoI GCNNNNNNNGC 1 cut(s) 623
NdeI CATATG 1 cut(s) 117
NdeII GATC 5 cut(s) 56, 80, 279, 455, 579
NlaIII CATG 3 cut(s) 271, 514, 526
NlaIV GGNNCC 2 cut(s) 627, 669
NmuCI GTSAC 2 cut(s) 400, 568
PasI CCCWGGG 1 cut(s) 102
PfeI GAWTC 1 cut(s) 634
PkrI GCNGC 1 cut(s) 435
PshAI GACNNNNGTC 1 cut(s) 653
PshBI ATTAAT 1 cut(s) 216
Psp6I CCWGG 3 cut(s) 66, 101, 628
PspGI CCWGG 3 cut(s) 66, 101, 628
PspN4I GGNNCC 2 cut(s) 627, 669
PstNI CAGNNNCTG 1 cut(s) 652
PsuI RGATCY 3 cut(s) 56, 80, 579
PvuII CAGCTG 1 cut(s) 617
RsaI GTAC 3 cut(s) 343, 387, 424
RsaNI GTAC 3 cut(s) 342, 386, 423
SaqAI TTAA 9 cut(s) 164, 204, 216, 362, 395, 693, 714, 737, 751
SatI GCNGC 1 cut(s) 434
Sau3AI GATC 5 cut(s) 56, 80, 279, 455, 579
ScaI AGTACT 1 cut(s) 387
ScrFI CCNGG 3 cut(s) 68, 103, 630
SetI ASST 7 cut(s) 53, 210, 234, 435, 488, 558, 619
Sse9I AATT 4 cut(s) 61, 111, 201, 686
SspMI CTAG 4 cut(s) 159, 209, 575, 638
StyD4I CCNGG 3 cut(s) 66, 101, 628
TaaI ACNGT 2 cut(s) 427, 594
TaiI ACGT 1 cut(s) 558
TaqI TCGA 2 cut(s) 188, 657
TasI AATT 4 cut(s) 61, 111, 201, 686
TatI WGTACW 3 cut(s) 341, 385, 422
TfiI GAWTC 1 cut(s) 634
Tru1I TTAA 9 cut(s) 164, 204, 216, 362, 395, 693, 714, 737, 751
Tru9I TTAA 9 cut(s) 164, 204, 216, 362, 395, 693, 714, 737, 751
TscAI CASTG 3 cut(s) 247, 657, 669
TseFI GTSAC 2 cut(s) 400, 568
TseI GCWGC 1 cut(s) 433
Tsp45I GTSAC 2 cut(s) 400, 568
TspDTI ATGAA 2 cut(s) 104, 119
TspGWI ACGGA 2 cut(s) 36, 742
TspRI CASTG 3 cut(s) 247, 657, 669
VspI ATTAAT 1 cut(s) 216
XapI RAATTY 1 cut(s) 111
XbaI TCTAGA 1 cut(s) 574
XspI CTAG 4 cut(s) 159, 209, 575, 638
ZrmI AGTACT 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.