Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0009176

Physical Location & Seq

Genomic Coordinates Reverse (-)

16024687 .. 16027089

Gene Structure 2403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g12330.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGTCACTAAATTTCAAGTGGCAAGAACAACTGCATGGCCTTGCTTCATTCCCATCCCCTGCCACTCCAATCTTCAATACCAGGAAGAAAGTTGAAGTAACAAGGGTGTTGGCTAAAGCAGCTAACTTGGGTGCTGAATCAAATGCAAAGAAAGCAAATTTGTCTGCTGCAAAGAAGGAAAGAATTAAGCTGCCAAGTTTTGATAGTAACAATGTTCACATTAGAGAATTCCTAAGCCACCAATCAGGAACTGAAGCCATGCTCAACACTAGAGCATTGCAAAGTTTTGAACCGCTTAGTACTGATACTTACAGGTGCACTTTGCCAAAGCTTAAACTTTTGAATTTTGAAGCTGCCCCTGTGGTAGATTTGAGAGTCAACCCAACCGATGAGGATTGTATGGTTGAGATGCTCTCTTGCAGGTTTGACGGTTCAGAAGCCGTGGAACGCCAAAACAGCCGTTTTTCAGCACTCATGACAAATCACATGTCATGGGAGAGAGACGACTCTGAATCATATTTGGAAGTTGATGTGAAGTTAAAGCTCACCCTCGAGATCTATACACGTCCTTTTACCATGATGCCAGTATCAGCTGTTGAGCGTCCGGGAAACTTAATGATGCAAGCACTTCTGGATAGGCTAGTACCACTGCTTTTGCAGCAACTCCTAGAAGATTATCAGAAATGGGTTCATAAGCAATTAAATGATGATCTTCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1997

Protein Analysis

240

Amino Acids

27.29

Weight (kDa)

6.24

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF1997	PF09366	74 - 230	5.3e-39	Protein of unknown function (DUF1997)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31115 AT4G31115
fragaria_vesca	FvH4_4g12330
malus_domestica	MD08G1133200.v1.1
prunus_persica	Prupe.1G463100_v2.0.a1 Prupe.1G463100_v2.0.a1 Prupe.1G463100_v2.0.a1 Prupe.1G463100_v2.0.a1
pyrus_communis	pycom08g11210
rosa_chinensis	RchiOBHm_Chr4g0410411
rosa_laevigata	RLG00000008431
rosa_multiflora	Rmu_co8379347.1_g000001 Rmu_sc0002111.1_g000015
rosa_roxburghii	Rroxscaffold_5G00355220
rosa_rugosa	Rorug04G0102400 Rorug04G0102500 Rorug04G0102600
rosa_samantha	Rh4AG160500 Rh4BG159700 Rh4CG172600 Rh4DG155400
rosa_wichuraiana	Rw4G013380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	411
AciI	CCGC	1 cut(s)	293
AcsI	RAATTY	4 cut(s)	10, 157, 227, 343
AcuI	CTGAAG	1 cut(s)	273
AfaI	GTAC	2 cut(s)	301, 645
AflIII	ACRYGT	2 cut(s)	486, 563
AgsI	TTSAA	6 cut(s)	16, 76, 95, 290, 343, 350
AjiI	CACGTC	1 cut(s)	566
AjnI	CCWGG	1 cut(s)	80
AluBI	AGCT	6 cut(s)	122, 190, 331, 353, 544, 593
AluI	AGCT	6 cut(s)	122, 190, 331, 353, 544, 593
Alw21I	GWGCWC	1 cut(s)	320
Alw26I	GTCTC	1 cut(s)	495
Alw44I	GTGCAC	1 cut(s)	316
AlwNI	CAGNNNCTG	1 cut(s)	251
Ama87I	CYCGRG	1 cut(s)	551
AoxI	GGCC	1 cut(s)	37
ApaLI	GTGCAC	1 cut(s)	316
ApeKI	GCWGC	5 cut(s)	119, 167, 190, 353, 658
ApoI	RAATTY	4 cut(s)	10, 157, 227, 343
ArsI	GACNNNNNNTTYG	2 cut(s)	473, 505
AsuC2I	CCSGG	1 cut(s)	606
AsuHPI	GGTGA	1 cut(s)	538
AvaI	CYCGRG	1 cut(s)	551
BaeGI	GKGCMC	1 cut(s)	320
Bbv12I	GWGCWC	1 cut(s)	320
BbvI	GCAGC	5 cut(s)	131, 154, 177, 340, 670
BccI	CCATC	1 cut(s)	61
BceAI	ACGGC	2 cut(s)	425, 444
BciT130I	CCWGG	1 cut(s)	82
BcnI	CCSGG	1 cut(s)	606
BcoDI	GTCTC	1 cut(s)	495
BfaI	CTAG	3 cut(s)	270, 641, 668
BfuAI	ACCTGC	1 cut(s)	411
BglII	AGATCT	1 cut(s)	555
BisI	GCNGC	5 cut(s)	120, 168, 191, 354, 659
BlsI	GCNGC	5 cut(s)	121, 169, 192, 355, 660
BmcAI	AGTACT	1 cut(s)	301
Bme1390I	CCNGG	2 cut(s)	82, 606
BmeT110I	CYCGRG	1 cut(s)	551
BmgBI	CACGTC	1 cut(s)	566
BmrFI	CCNGG	2 cut(s)	82, 606
BmsI	GCATC	3 cut(s)	399, 570, 609
BplI	GAGNNNNNCTC	2 cut(s)	398, 430
Bpu10I	CCTNAGC	1 cut(s)	233
BpuMI	CCSGG	1 cut(s)	606
BsaJI	CCNNGG	1 cut(s)	441
Bse1I	ACTGG	1 cut(s)	584
Bse3DI	GCAATG	1 cut(s)	275
BseBI	CCWGG	1 cut(s)	82
BseDI	CCNNGG	1 cut(s)	441
BseGI	GGATG	1 cut(s)	53
BseMI	GCAATG	1 cut(s)	275
BseNI	ACTGG	1 cut(s)	584
BseSI	GKGCMC	1 cut(s)	320
BseXI	GCAGC	5 cut(s)	131, 154, 177, 340, 670
BshFI	GGCC	1 cut(s)	39
BsiHKAI	GWGCWC	1 cut(s)	320
BsiHKCI	CYCGRG	1 cut(s)	551
BsiSI	CCGG	1 cut(s)	605
BsmAI	GTCTC	1 cut(s)	495
BsmBI	CGTCTC	1 cut(s)	495
BsnI	GGCC	1 cut(s)	39
BsoBI	CYCGRG	1 cut(s)	551
Bsp1286I	GDGCHC	1 cut(s)	320
Bsp143I	GATC	2 cut(s)	555, 709
BspACI	CCGC	1 cut(s)	293
BspANI	GGCC	1 cut(s)	39
BspHI	TCATGA	1 cut(s)	474
BspMI	ACCTGC	1 cut(s)	411
BsrDI	GCAATG	1 cut(s)	275
BsrI	ACTGG	1 cut(s)	584
BssECI	CCNNGG	1 cut(s)	441
BssMI	GATC	2 cut(s)	555, 709
Bst2UI	CCWGG	1 cut(s)	82
Bst4CI	ACNGT	1 cut(s)	431
BstC8I	GCNNGC	1 cut(s)	624
BstDEI	CTNAG	2 cut(s)	233, 296
BstDSI	CCRYGG	1 cut(s)	441
BstF5I	GGATG	1 cut(s)	53
BstKTI	GATC	2 cut(s)	558, 712
BstMAI	GTCTC	1 cut(s)	495
BstMBI	GATC	2 cut(s)	555, 709
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 152, 456, 658
BstNI	CCWGG	1 cut(s)	82
BstNSI	RCATGY	1 cut(s)	490
BstSCI	CCNGG	2 cut(s)	80, 604
BstSLI	GKGCMC	1 cut(s)	320
BstV1I	GCAGC	5 cut(s)	131, 154, 177, 340, 670
BstX2I	RGATCY	1 cut(s)	555
BstYI	RGATCY	1 cut(s)	555
BsuRI	GGCC	1 cut(s)	39
BtgI	CCRYGG	1 cut(s)	441
BtrI	CACGTC	1 cut(s)	566
BtsCI	GGATG	1 cut(s)	53
BtsI	GCAGTG	1 cut(s)	647
BtsIMutI	CAGTG	1 cut(s)	647
BveI	ACCTGC	1 cut(s)	411
Cac8I	GCNNGC	1 cut(s)	624
CaiI	CAGNNNCTG	1 cut(s)	251
CciI	TCATGA	1 cut(s)	474
CseI	GACGC	1 cut(s)	590
Csp6I	GTAC	2 cut(s)	300, 644
CspCI	CAANNNNNGTGG	2 cut(s)	636, 671
CviAII	CATG	7 cut(s)	35, 259, 475, 487, 492, 577, 717
CviQI	GTAC	2 cut(s)	300, 644
DdeI	CTNAG	2 cut(s)	233, 296
DpnI	GATC	2 cut(s)	557, 711
DpnII	GATC	2 cut(s)	555, 709
Eco57I	CTGAAG	1 cut(s)	273
Eco88I	CYCGRG	1 cut(s)	551
EcoRI	GAATTC	1 cut(s)	227
EcoRII	CCWGG	1 cut(s)	80
Esp3I	CGTCTC	1 cut(s)	495
FaeI	CATG	7 cut(s)	38, 262, 478, 490, 495, 580, 720
FatI	CATG	7 cut(s)	34, 258, 474, 486, 491, 576, 716
Fnu4HI	GCNGC	5 cut(s)	120, 168, 191, 354, 659
FokI	GGATG	1 cut(s)	40
Fsp4HI	GCNGC	5 cut(s)	120, 168, 191, 354, 659
FspBI	CTAG	3 cut(s)	270, 641, 668
GluI	GCNGC	5 cut(s)	120, 168, 191, 354, 659
HaeIII	GGCC	1 cut(s)	39
HapII	CCGG	1 cut(s)	605
HgaI	GACGC	1 cut(s)	590
Hin1II	CATG	7 cut(s)	38, 262, 478, 490, 495, 580, 720
HincII	GTYRAC	1 cut(s)	379
HindII	GTYRAC	1 cut(s)	379
HindIII	AAGCTT	1 cut(s)	329
HinfI	GANTC	4 cut(s)	137, 375, 506, 512
HpaII	CCGG	1 cut(s)	605
HphI	GGTGA	1 cut(s)	538
Hpy166II	GTNNAC	3 cut(s)	217, 318, 379
Hpy188I	TCNGA	3 cut(s)	436, 511, 681
Hpy188III	TCNNGA	4 cut(s)	246, 475, 553, 632
Hpy8I	GTNNAC	3 cut(s)	217, 318, 379
HpyAV	CCTTC	1 cut(s)	169
HpyCH4III	ACNGT	1 cut(s)	431
HpyCH4IV	ACGT	1 cut(s)	565
HpyCH4V	TGCA	8 cut(s)	34, 146, 170, 280, 318, 420, 622, 658
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 152, 456, 658
HpyF3I	CTNAG	2 cut(s)	233, 296
HpySE526I	ACGT	1 cut(s)	565
Hsp92II	CATG	7 cut(s)	38, 262, 478, 490, 495, 580, 720
Kzo9I	GATC	2 cut(s)	555, 709
Lsp1109I	GCAGC	5 cut(s)	131, 154, 177, 340, 670
LweI	GCATC	3 cut(s)	399, 570, 609
MaeI	CTAG	3 cut(s)	270, 641, 668
MaeII	ACGT	1 cut(s)	565
MaeIII	GTNAC	3 cut(s)	3, 97, 206
MalI	GATC	2 cut(s)	557, 711
MboI	GATC	2 cut(s)	555, 709
MboII	GAAGA	4 cut(s)	64, 97, 683, 704
MflI	RGATCY	1 cut(s)	555
MhlI	GDGCHC	1 cut(s)	320
MluCI	AATT	6 cut(s)	10, 157, 183, 227, 343, 698
MlyI	GAGTC	2 cut(s)	384, 500
MnlI	CCTC	2 cut(s)	385, 560
MseI	TTAA	5 cut(s)	186, 333, 539, 614, 701
MspA1I	CMGCKG	1 cut(s)	593
MspI	CCGG	1 cut(s)	605
MspR9I	CCNGG	2 cut(s)	82, 606
MvaI	CCWGG	1 cut(s)	82
MwoI	GCNNNNNNNGC	4 cut(s)	119, 152, 456, 658
NciI	CCSGG	1 cut(s)	606
NdeII	GATC	2 cut(s)	555, 709
NlaIII	CATG	7 cut(s)	38, 262, 478, 490, 495, 580, 720
NmuCI	GTSAC	1 cut(s)	3
NspI	RCATGY	1 cut(s)	490
PaeR7I	CTCGAG	1 cut(s)	551
PagI	TCATGA	1 cut(s)	474
PciI	ACATGT	1 cut(s)	486
PfeI	GAWTC	2 cut(s)	137, 512
PfoI	TCCNGGA	1 cut(s)	604
PkrI	GCNGC	5 cut(s)	121, 169, 192, 355, 660
PleI	GAGTC	2 cut(s)	383, 500
PpsI	GAGTC	2 cut(s)	383, 500
PscI	ACATGT	1 cut(s)	486
Psp6I	CCWGG	1 cut(s)	80
PspGI	CCWGG	1 cut(s)	80
PstNI	CAGNNNCTG	1 cut(s)	251
PsuI	RGATCY	1 cut(s)	555
PvuII	CAGCTG	1 cut(s)	593
RsaI	GTAC	2 cut(s)	301, 645
RsaNI	GTAC	2 cut(s)	300, 644
SaqAI	TTAA	5 cut(s)	186, 333, 539, 614, 701
SatI	GCNGC	5 cut(s)	120, 168, 191, 354, 659
Sau3AI	GATC	2 cut(s)	555, 709
ScaI	AGTACT	1 cut(s)	301
SchI	GAGTC	2 cut(s)	384, 500
ScrFI	CCNGG	2 cut(s)	82, 606
SduI	GDGCHC	1 cut(s)	320
SetI	ASST	9 cut(s)	124, 192, 317, 333, 355, 425, 546, 568, 595
SfaNI	GCATC	3 cut(s)	399, 570, 609
Sfr274I	CTCGAG	1 cut(s)	551
SlaI	CTCGAG	1 cut(s)	551
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
Sse9I	AATT	6 cut(s)	10, 157, 183, 227, 343, 698
SsiI	CCGC	1 cut(s)	293
SspMI	CTAG	3 cut(s)	270, 641, 668
StyD4I	CCNGG	2 cut(s)	80, 604
TaaI	ACNGT	1 cut(s)	431
TaiI	ACGT	1 cut(s)	568
TaqI	TCGA	1 cut(s)	552
TasI	AATT	6 cut(s)	10, 157, 183, 227, 343, 698
TatI	WGTACW	1 cut(s)	299
TfiI	GAWTC	2 cut(s)	137, 512
Tru1I	TTAA	5 cut(s)	186, 333, 539, 614, 701
Tru9I	TTAA	5 cut(s)	186, 333, 539, 614, 701
TscAI	CASTG	1 cut(s)	654
TseFI	GTSAC	1 cut(s)	3
TseI	GCWGC	5 cut(s)	119, 167, 190, 353, 658
Tsp45I	GTSAC	1 cut(s)	3
TspDTI	ATGAA	2 cut(s)	36, 680
TspRI	CASTG	1 cut(s)	654
VneI	GTGCAC	1 cut(s)	316
XapI	RAATTY	4 cut(s)	10, 157, 227, 343
XceI	RCATGY	1 cut(s)	490
XhoI	CTCGAG	1 cut(s)	551
XspI	CTAG	3 cut(s)	270, 641, 668
ZrmI	AGTACT	1 cut(s)	301

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.