Rh4CG172600

Protein of unknown function (DUF1997)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0009176
Physical Location & Seq
Reverse (-)
37775216 .. 37778151
2936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG172600.1

Sequence Viewer

Length: 651 bp
ATGTCACTAAGTATCAAGTGGCATGAACAACTACATGGCTTTACTTCATTCCCATCCCCTGCTACTCCAATCTTCAATACCAGGAAGAAAGTTGAAGTGATAAGGGTGTTAGCTAAAGCAGCTAACTTGGGTTCTGAATCAAATGCAAAGAAAGCAAATTTGTGTGCTGCAAAGAAGGAAAGAATTAAGCTGCCCAGTTTTGATGGTAACTTAGGGCGCAAGAATTTTCACATTAGAGAGTTTCTAAGCCACCCATCAGGAACTGAAGCCATGCTCAATACTAGAGCACTGGAAAATTTTGAACCCCTTAGCACTGATACTTACAGGTGCACTTTGCCAAAGCTTAAACTTTTGAATTTTGAAGCAGCCCCTGTGGTGGATTTAAGAGTGAACCCAACCAATGAGGATTGTTTGGTTGAGATGCTCTCTTGCAAGTTTGAGGGTTCAGAATCTGTGGAACGCCAAAACAGCCGTTTTTCAGCATTGATGACAAATCACATGTCGTGGGGGACAGACGACTCTGAATCATTTTTGGAAGTTGATGTGAAGTTAAATCTCACCCTCGAGGTTGTCAATCTTCCCCTAAACGACCCTTTTTGTTCTCTTCTTCCTGCTCAAAAACCTTTAGTATCAGTATGCCACTTTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1997

Protein Analysis

216

Amino Acids

24.21

Weight (kDa)

7.0

Isoelectric Point (pI)

35.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1997 PF09366 78 - 191 7.2e-23 Protein of unknown function (DUF1997)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 563
AcsI RAATTY 4 cut(s) 157, 223, 295, 355
AcuI CTGAAG 1 cut(s) 285
AfiI CCNNNNNNNGG 1 cut(s) 376
AflIII ACRYGT 1 cut(s) 498
AgsI TTSAA 5 cut(s) 76, 95, 302, 355, 362
AjnI CCWGG 1 cut(s) 80
AluBI AGCT 4 cut(s) 113, 122, 190, 343
AluI AGCT 4 cut(s) 113, 122, 190, 343
Alw21I GWGCWC 2 cut(s) 289, 332
Alw44I GTGCAC 1 cut(s) 328
AlwNI CAGNNNCTG 3 cut(s) 263, 371, 452
Ama87I CYCGRG 1 cut(s) 563
ApaLI GTGCAC 1 cut(s) 328
ApeKI GCWGC 4 cut(s) 119, 167, 190, 365
ApoI RAATTY 4 cut(s) 157, 223, 295, 355
ArsI GACNNNNNNTTYG 2 cut(s) 485, 517
AspLEI GCGC 1 cut(s) 219
AsuHPI GGTGA 1 cut(s) 550
AvaI CYCGRG 1 cut(s) 563
BaeGI GKGCMC 1 cut(s) 332
Bbv12I GWGCWC 2 cut(s) 289, 332
BbvI GCAGC 4 cut(s) 131, 154, 177, 377
BccI CCATC 3 cut(s) 61, 197, 262
BceAI ACGGC 1 cut(s) 456
BciT130I CCWGG 1 cut(s) 82
BfaI CTAG 1 cut(s) 282
BisI GCNGC 4 cut(s) 120, 168, 191, 366
BlsI GCNGC 4 cut(s) 121, 169, 192, 367
Bme1390I CCNGG 1 cut(s) 82
BmeT110I CYCGRG 1 cut(s) 563
BmrFI CCNGG 1 cut(s) 82
BmrI ACTGGG 1 cut(s) 189
BmsI GCATC 1 cut(s) 411
BmuI ACTGGG 1 cut(s) 189
BplI GAGNNNNNCTC 2 cut(s) 410, 442
Bpu10I CCTNAGC 1 cut(s) 308
Bsc4I CCNNNNNNNGG 1 cut(s) 376
Bse1I ACTGG 2 cut(s) 195, 294
BseBI CCWGG 1 cut(s) 82
BseGI GGATG 1 cut(s) 53
BseLI CCNNNNNNNGG 1 cut(s) 376
BseNI ACTGG 2 cut(s) 195, 294
BseSI GKGCMC 1 cut(s) 332
BseXI GCAGC 4 cut(s) 131, 154, 177, 377
BsiHKAI GWGCWC 2 cut(s) 289, 332
BsiHKCI CYCGRG 1 cut(s) 563
BslFI GGGAC 1 cut(s) 523
BslI CCNNNNNNNGG 1 cut(s) 376
BsmFI GGGAC 1 cut(s) 523
BsoBI CYCGRG 1 cut(s) 563
Bsp1286I GDGCHC 2 cut(s) 289, 332
BsrI ACTGG 2 cut(s) 195, 294
Bst2UI CCWGG 1 cut(s) 82
Bst6I CTCTTC 1 cut(s) 609
BstDEI CTNAG 4 cut(s) 8, 211, 245, 308
BstF5I GGATG 1 cut(s) 53
BstHHI GCGC 1 cut(s) 219
BstMWI GCNNNNNNNGC 3 cut(s) 119, 152, 468
BstNI CCWGG 1 cut(s) 82
BstNSI RCATGY 1 cut(s) 502
BstSCI CCNGG 1 cut(s) 80
BstSLI GKGCMC 1 cut(s) 332
BstV1I GCAGC 4 cut(s) 131, 154, 177, 377
BtsCI GGATG 1 cut(s) 53
BtsIMutI CAGTG 2 cut(s) 287, 312
CaiI CAGNNNCTG 3 cut(s) 263, 371, 452
CfoI GCGC 1 cut(s) 219
CviAII CATG 4 cut(s) 23, 35, 271, 499
CviJI RGCY 9 cut(s) 39, 113, 122, 190, 249, 269, 343, 368, 471
CviKI_1 RGCY 9 cut(s) 39, 113, 122, 190, 249, 269, 343, 368, 471
DdeI CTNAG 4 cut(s) 8, 211, 245, 308
Eam1104I CTCTTC 1 cut(s) 609
EarI CTCTTC 1 cut(s) 609
Eco57I CTGAAG 1 cut(s) 285
Eco88I CYCGRG 1 cut(s) 563
EcoRII CCWGG 1 cut(s) 80
FaeI CATG 4 cut(s) 26, 38, 274, 502
FaiI YATR 5 cut(s) 24, 36, 272, 500, 637
FaqI GGGAC 1 cut(s) 523
FatI CATG 4 cut(s) 22, 34, 270, 498
Fnu4HI GCNGC 4 cut(s) 120, 168, 191, 366
FokI GGATG 1 cut(s) 40
Fsp4HI GCNGC 4 cut(s) 120, 168, 191, 366
FspBI CTAG 1 cut(s) 282
GlaI GCGC 1 cut(s) 218
GluI GCNGC 4 cut(s) 120, 168, 191, 366
HhaI GCGC 1 cut(s) 219
Hin1II CATG 4 cut(s) 26, 38, 274, 502
Hin6I GCGC 1 cut(s) 217
HinP1I GCGC 1 cut(s) 217
HindIII AAGCTT 1 cut(s) 341
HinfI GANTC 4 cut(s) 137, 449, 518, 524
HphI GGTGA 1 cut(s) 550
Hpy166II GTNNAC 2 cut(s) 330, 391
Hpy188I TCNGA 3 cut(s) 136, 448, 523
Hpy188III TCNNGA 1 cut(s) 258
Hpy8I GTNNAC 2 cut(s) 330, 391
HpyAV CCTTC 1 cut(s) 169
HpyCH4V TGCA 4 cut(s) 146, 170, 330, 432
HpyF10VI GCNNNNNNNGC 3 cut(s) 119, 152, 468
HpyF3I CTNAG 4 cut(s) 8, 211, 245, 308
Hsp92II CATG 4 cut(s) 26, 38, 274, 502
HspAI GCGC 1 cut(s) 217
LpnPI CCDG 9 cut(s) 67, 72, 94, 208, 243, 275, 310, 384, 624
Lsp1109I GCAGC 4 cut(s) 131, 154, 177, 377
LweI GCATC 1 cut(s) 411
MaeI CTAG 1 cut(s) 282
MaeIII GTNAC 2 cut(s) 3, 206
MboII GAAGA 5 cut(s) 64, 97, 569, 596, 599
MhlI GDGCHC 2 cut(s) 289, 332
MluCI AATT 5 cut(s) 157, 183, 223, 295, 355
MlyI GAGTC 1 cut(s) 512
MnlI CCTC 4 cut(s) 397, 433, 559, 572
MseI TTAA 4 cut(s) 186, 345, 383, 551
MspR9I CCNGG 1 cut(s) 82
MvaI CCWGG 1 cut(s) 82
MwoI GCNNNNNNNGC 3 cut(s) 119, 152, 468
NlaIII CATG 4 cut(s) 26, 38, 274, 502
NmuCI GTSAC 1 cut(s) 3
NspI RCATGY 1 cut(s) 502
PaeR7I CTCGAG 1 cut(s) 563
PciI ACATGT 1 cut(s) 498
PfeI GAWTC 3 cut(s) 137, 449, 524
PkrI GCNGC 4 cut(s) 121, 169, 192, 367
PleI GAGTC 1 cut(s) 512
PpsI GAGTC 1 cut(s) 512
PscI ACATGT 1 cut(s) 498
Psp6I CCWGG 1 cut(s) 80
PspGI CCWGG 1 cut(s) 80
PspXI VCTCGAGB 1 cut(s) 563
PstNI CAGNNNCTG 3 cut(s) 263, 371, 452
SaqAI TTAA 4 cut(s) 186, 345, 383, 551
SatI GCNGC 4 cut(s) 120, 168, 191, 366
SchI GAGTC 1 cut(s) 512
ScrFI CCNGG 1 cut(s) 82
SduI GDGCHC 2 cut(s) 289, 332
SetI ASST 7 cut(s) 115, 124, 192, 329, 345, 570, 625
SfaNI GCATC 1 cut(s) 411
Sfr274I CTCGAG 1 cut(s) 563
SlaI CTCGAG 1 cut(s) 563
SmlI CTYRAG 1 cut(s) 563
SmoI CTYRAG 1 cut(s) 563
Sse9I AATT 5 cut(s) 157, 183, 223, 295, 355
SspMI CTAG 1 cut(s) 282
StyD4I CCNGG 1 cut(s) 80
TaqI TCGA 1 cut(s) 564
TasI AATT 5 cut(s) 157, 183, 223, 295, 355
TfiI GAWTC 3 cut(s) 137, 449, 524
Tru1I TTAA 4 cut(s) 186, 345, 383, 551
Tru9I TTAA 4 cut(s) 186, 345, 383, 551
TscAI CASTG 2 cut(s) 294, 319
TseFI GTSAC 1 cut(s) 3
TseI GCWGC 4 cut(s) 119, 167, 190, 365
Tsp45I GTSAC 1 cut(s) 3
TspDTI ATGAA 2 cut(s) 36, 39
TspRI CASTG 2 cut(s) 294, 319
VneI GTGCAC 1 cut(s) 328
XapI RAATTY 4 cut(s) 157, 223, 295, 355
XceI RCATGY 1 cut(s) 502
XhoI CTCGAG 1 cut(s) 563
XspI CTAG 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.