Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0009176

Physical Location & Seq

Genomic Coordinates Reverse (-)

16022411 .. 16023460

Gene Structure 1050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0102600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGAAGTTTTATGGGACTTACTTGTTTGTCTTATTCAGTCTTCTCCTACTATCCTCCTATGTTAATGGCGACCATGTTTTTTCCGATAGTTCAGCAAATTATGATGATGTCTTAAGGCTTGTGCCTTCAGGCCCGAATCCCCGAGAGTCTCCACCGTTGGATGTCTTCAGGCGTGTGCCTACGGGTCCCAACCCTCGGCAGTCACCACCGGTGCAAGATTTCGAGCATGGGGCCTTTGATAGTTCATCCAACCATGATGATGTCTTAAGGCTTGTCCCCAAAGGTCCGAATCCTCAGCAGCCTCCACCACTGAATGTCTTAACGCGTGTGCCGCCTTCAGGCCCGAATCCTCGAGAGTCTCCACCGTCGGATGTCTTCAGGCTTGTGCCTACGGGTCCCAACCCTCGGCAGTCACCACCGGTGCAAGATTTCGAGCATGGGGCCTTTGATAGTTCATCCAACCATGATGATGTCTTAAGGCTTGTCCCCAAAGGTCCGAATCCTCAGCAGCCTCCACCACTGAATGTCTTAACGCGTGTGCCGCCTTCAGGCCCGAATCCTCGAGAGTCTCCTCCGTTGGATGTCTTCAGGCTTGTGCCTACGGGTCCTAACCCTCGGCAGTCACCACCGGTGAAAGATTTCGAGCATGGGGCCTTTGATAGTTCATCCAACCATGGTGATGTCTTAAGGCTTGTCCCCAAAGGTCCGAATCCTCAGCAGCCTCCATCAGGTAATGTCTTCACGCGTGTGCTGCCTTCAGGCCAGAATCCTCGAGAGTCTCCACCGTTGGATGTCTTCAGACTTGTACCTACGGGTCCCAACCCTCGGCAGTCACCACCGGTGCAAGATTTCGAGCATGGGGCCTTTGATAGTTCATCCAACCATGATGATCTCTTAAGGCTTGTCCCCAAAGGTCCGAATCCTCAGCAGCCTCCACCGCTGAAAGATTTCGAGTATAAGACATCAAATAGTTTTTACAATTTAGCTGATATTTCAAGGCGTGTACCTAAGGGACCTAATCCTCGAGAGTCTCCACCATTTAGTCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1997

Protein Analysis

349

Amino Acids

38.3

Weight (kDa)

6.5

Isoelectric Point (pI)

71.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31115 AT4G31115
fragaria_vesca	FvH4_4g12330
malus_domestica	MD08G1133200.v1.1
prunus_persica	Prupe.1G463100_v2.0.a1 Prupe.1G463100_v2.0.a1 Prupe.1G463100_v2.0.a1 Prupe.1G463100_v2.0.a1
pyrus_communis	pycom08g11210
rosa_chinensis	RchiOBHm_Chr4g0410411
rosa_laevigata	RLG00000008431
rosa_multiflora	Rmu_co8379347.1_g000001 Rmu_sc0002111.1_g000015
rosa_roxburghii	Rroxscaffold_5G00355220
rosa_rugosa	Rorug04G0102400 Rorug04G0102500 Rorug04G0102600
rosa_samantha	Rh4AG160500 Rh4BG159700 Rh4CG172600 Rh4DG155400
rosa_wichuraiana	Rw4G013380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	325, 535, 745
AciI	CCGC	3 cut(s)	332, 542, 938
AcuI	CTGAAG	8 cut(s)	111, 151, 321, 361, 531, 571, 741, 781
AfaI	GTAC	2 cut(s)	807, 1005
AfiI	CCNNNNNNNGG	6 cut(s)	195, 338, 405, 548, 728, 825
AflII	CTTAAG	5 cut(s)	112, 265, 475, 685, 895
AflIII	ACRYGT	3 cut(s)	323, 533, 743
AgeI	ACCGGT	4 cut(s)	208, 418, 628, 838
AgsI	TTSAA	1 cut(s)	996
AleI	CACNNNNGTG	1 cut(s)	746
AluBI	AGCT	1 cut(s)	986
AluI	AGCT	1 cut(s)	986
Alw26I	GTCTC	5 cut(s)	153, 363, 573, 783, 1035
Ama87I	CYCGRG	5 cut(s)	141, 351, 561, 771, 1023
AoxI	GGCC	8 cut(s)	130, 231, 340, 441, 550, 651, 760, 861
ApeKI	GCWGC	5 cut(s)	298, 508, 718, 751, 928
AsiGI	ACCGGT	4 cut(s)	208, 418, 628, 838
Asp700I	GAANNNNTTC	2 cut(s)	638, 947
AsuHPI	GGTGA	6 cut(s)	195, 405, 615, 643, 689, 825
AvaI	CYCGRG	5 cut(s)	141, 351, 561, 771, 1023
AvaII	GGWCC	9 cut(s)	185, 284, 395, 494, 605, 704, 815, 914, 1013
AxyI	CCTNAGG	1 cut(s)	1008
BbsI	GAAGAC	6 cut(s)	32, 157, 367, 577, 730, 787
BbvCI	CCTCAGC	4 cut(s)	294, 504, 714, 924
BbvI	GCAGC	5 cut(s)	310, 520, 730, 738, 940
BccI	CCATC	1 cut(s)	733
BcoDI	GTCTC	5 cut(s)	153, 363, 573, 783, 1035
BfrI	CTTAAG	5 cut(s)	112, 265, 475, 685, 895
BisI	GCNGC	7 cut(s)	299, 332, 509, 542, 719, 752, 929
BlsI	GCNGC	7 cut(s)	300, 333, 510, 543, 720, 753, 930
Bme18I	GGWCC	9 cut(s)	185, 284, 395, 494, 605, 704, 815, 914, 1013
BmeT110I	CYCGRG	5 cut(s)	141, 351, 561, 771, 1023
BpiI	GAAGAC	6 cut(s)	32, 157, 367, 577, 730, 787
Bpu10I	CCTNAGC	4 cut(s)	294, 504, 714, 924
BsaJI	CCNNGG	5 cut(s)	194, 404, 614, 673, 824
BsaWI	WCCGGW	4 cut(s)	208, 418, 628, 838
Bsc4I	CCNNNNNNNGG	6 cut(s)	195, 338, 405, 548, 728, 825
Bse118I	RCCGGY	4 cut(s)	208, 418, 628, 838
Bse21I	CCTNAGG	1 cut(s)	1008
BseDI	CCNNGG	5 cut(s)	194, 404, 614, 673, 824
BseGI	GGATG	8 cut(s)	166, 245, 376, 455, 586, 665, 796, 875
BseLI	CCNNNNNNNGG	6 cut(s)	195, 338, 405, 548, 728, 825
BseMII	CTCAG	4 cut(s)	308, 518, 728, 938
BseRI	GAGGAG	1 cut(s)	561
BseXI	GCAGC	5 cut(s)	310, 520, 730, 738, 940
Bsh1236I	CGCG	3 cut(s)	325, 535, 745
BshFI	GGCC	8 cut(s)	132, 233, 342, 443, 552, 653, 762, 863
BshTI	ACCGGT	4 cut(s)	208, 418, 628, 838
BsiHKCI	CYCGRG	5 cut(s)	141, 351, 561, 771, 1023
BsiSI	CCGG	4 cut(s)	209, 419, 629, 839
BslFI	GGGAC	9 cut(s)	28, 171, 260, 381, 470, 680, 801, 890, 1026
BslI	CCNNNNNNNGG	6 cut(s)	195, 338, 405, 548, 728, 825
BsmAI	GTCTC	5 cut(s)	153, 363, 573, 783, 1035
BsmFI	GGGAC	9 cut(s)	28, 171, 260, 381, 470, 680, 801, 890, 1026
BsnI	GGCC	8 cut(s)	132, 233, 342, 443, 552, 653, 762, 863
BsoBI	CYCGRG	5 cut(s)	141, 351, 561, 771, 1023
Bsp143I	GATC	1 cut(s)	889
Bsp19I	CCATGG	1 cut(s)	673
BspACI	CCGC	3 cut(s)	332, 542, 938
BspANI	GGCC	8 cut(s)	132, 233, 342, 443, 552, 653, 762, 863
BspCNI	CTCAG	4 cut(s)	307, 517, 727, 937
BspFNI	CGCG	3 cut(s)	325, 535, 745
BspTI	CTTAAG	5 cut(s)	112, 265, 475, 685, 895
BsrFI	RCCGGY	4 cut(s)	208, 418, 628, 838
BssAI	RCCGGY	4 cut(s)	208, 418, 628, 838
BssECI	CCNNGG	5 cut(s)	194, 404, 614, 673, 824
BssMI	GATC	1 cut(s)	889
BssT1I	CCWWGG	1 cut(s)	673
Bst4CI	ACNGT	3 cut(s)	156, 366, 786
BstAFI	CTTAAG	5 cut(s)	112, 265, 475, 685, 895
BstDEI	CTNAG	5 cut(s)	294, 504, 714, 924, 1008
BstDSI	CCRYGG	1 cut(s)	673
BstENI	CCTNNNNNAGG	1 cut(s)	726
BstF5I	GGATG	8 cut(s)	166, 245, 376, 455, 586, 665, 796, 875
BstFNI	CGCG	3 cut(s)	325, 535, 745
BstKTI	GATC	1 cut(s)	892
BstMAI	GTCTC	5 cut(s)	153, 363, 573, 783, 1035
BstMBI	GATC	1 cut(s)	889
BstMWI	GCNNNNNNNGC	4 cut(s)	331, 541, 751, 937
BstUI	CGCG	3 cut(s)	325, 535, 745
BstV1I	GCAGC	5 cut(s)	310, 520, 730, 738, 940
BstV2I	GAAGAC	6 cut(s)	32, 157, 367, 577, 730, 787
Bsu36I	CCTNAGG	1 cut(s)	1008
BsuRI	GGCC	8 cut(s)	132, 233, 342, 443, 552, 653, 762, 863
BtgI	CCRYGG	1 cut(s)	673
BtsCI	GGATG	8 cut(s)	166, 245, 376, 455, 586, 665, 796, 875
BtsIMutI	CAGTG	2 cut(s)	308, 518
Cfr10I	RCCGGY	4 cut(s)	208, 418, 628, 838
Csp6I	GTAC	2 cut(s)	806, 1004
CspAI	ACCGGT	4 cut(s)	208, 418, 628, 838
CviAII	CATG	9 cut(s)	74, 227, 254, 437, 464, 647, 674, 857, 884
CviQI	GTAC	2 cut(s)	806, 1004
DdeI	CTNAG	5 cut(s)	294, 504, 714, 924, 1008
DpnI	GATC	1 cut(s)	891
DpnII	GATC	1 cut(s)	889
Eco130I	CCWWGG	1 cut(s)	673
Eco47I	GGWCC	9 cut(s)	185, 284, 395, 494, 605, 704, 815, 914, 1013
Eco57I	CTGAAG	8 cut(s)	111, 151, 321, 361, 531, 571, 741, 781
Eco81I	CCTNAGG	1 cut(s)	1008
Eco88I	CYCGRG	5 cut(s)	141, 351, 561, 771, 1023
EcoNI	CCTNNNNNAGG	1 cut(s)	726
EcoO109I	RGGNCCY	9 cut(s)	185, 231, 395, 441, 605, 651, 815, 861, 1013
EcoT14I	CCWWGG	1 cut(s)	673
ErhI	CCWWGG	1 cut(s)	673
FaeI	CATG	9 cut(s)	77, 230, 257, 440, 467, 650, 677, 860, 887
FaqI	GGGAC	9 cut(s)	28, 171, 260, 381, 470, 680, 801, 890, 1026
FatI	CATG	9 cut(s)	73, 226, 253, 436, 463, 646, 673, 856, 883
Fnu4HI	GCNGC	7 cut(s)	299, 332, 509, 542, 719, 752, 929
FokI	GGATG	8 cut(s)	173, 232, 383, 442, 593, 652, 803, 862
Fsp4HI	GCNGC	7 cut(s)	299, 332, 509, 542, 719, 752, 929
GluI	GCNGC	7 cut(s)	299, 332, 509, 542, 719, 752, 929
HaeIII	GGCC	8 cut(s)	132, 233, 342, 443, 552, 653, 762, 863
HapII	CCGG	4 cut(s)	209, 419, 629, 839
Hin1II	CATG	9 cut(s)	77, 230, 257, 440, 467, 650, 677, 860, 887
HpaII	CCGG	4 cut(s)	209, 419, 629, 839
HphI	GGTGA	6 cut(s)	195, 405, 615, 643, 689, 825
Hpy166II	GTNNAC	1 cut(s)	1004
Hpy188I	TCNGA	7 cut(s)	85, 288, 370, 498, 708, 800, 918
Hpy188III	TCNNGA	4 cut(s)	353, 563, 773, 1025
Hpy8I	GTNNAC	1 cut(s)	1004
Hpy99I	CGWCG	1 cut(s)	370
HpyAV	CCTTC	4 cut(s)	135, 345, 555, 765
HpyCH4III	ACNGT	3 cut(s)	156, 366, 786
HpyCH4V	TGCA	3 cut(s)	214, 424, 844
HpyF10VI	GCNNNNNNNGC	4 cut(s)	331, 541, 751, 937
HpyF3I	CTNAG	5 cut(s)	294, 504, 714, 924, 1008
Hsp92II	CATG	9 cut(s)	77, 230, 257, 440, 467, 650, 677, 860, 887
KflI	GGGWCCC	3 cut(s)	185, 395, 815
Kzo9I	GATC	1 cut(s)	889
Lsp1109I	GCAGC	5 cut(s)	310, 520, 730, 738, 940
MaeIII	GTNAC	4 cut(s)	201, 411, 621, 831
MalI	GATC	1 cut(s)	891
MboI	GATC	1 cut(s)	889
MboII	GAAGA	6 cut(s)	32, 157, 367, 577, 730, 787
MluCI	AATT	2 cut(s)	97, 979
MluI	ACGCGT	3 cut(s)	323, 533, 743
MlyI	GAGTC	5 cut(s)	155, 365, 575, 785, 1037
MmeI	TCCRAC	8 cut(s)	138, 273, 348, 483, 558, 693, 768, 903
MroXI	GAANNNNTTC	2 cut(s)	638, 947
MseI	TTAA	8 cut(s)	63, 113, 266, 320, 476, 530, 686, 896
MslI	CAYNNNNRTG	4 cut(s)	258, 468, 678, 746
MspA1I	CMGCKG	1 cut(s)	940
MspCI	CTTAAG	5 cut(s)	112, 265, 475, 685, 895
MspI	CCGG	4 cut(s)	209, 419, 629, 839
MvnI	CGCG	3 cut(s)	325, 535, 745
MwoI	GCNNNNNNNGC	4 cut(s)	331, 541, 751, 937
NcoI	CCATGG	1 cut(s)	673
NdeII	GATC	1 cut(s)	889
NlaIII	CATG	9 cut(s)	77, 230, 257, 440, 467, 650, 677, 860, 887
NmeAIII	GCCGAG	4 cut(s)	175, 385, 595, 805
NmuCI	GTSAC	4 cut(s)	201, 411, 621, 831
OliI	CACNNNNGTG	1 cut(s)	746
PaeR7I	CTCGAG	4 cut(s)	351, 561, 771, 1023
PdmI	GAANNNNTTC	2 cut(s)	638, 947
PfeI	GAWTC	8 cut(s)	136, 289, 346, 499, 556, 709, 766, 919
PinAI	ACCGGT	4 cut(s)	208, 418, 628, 838
PkrI	GCNGC	7 cut(s)	300, 333, 510, 543, 720, 753, 930
PleI	GAGTC	5 cut(s)	154, 364, 574, 784, 1036
PpsI	GAGTC	5 cut(s)	154, 364, 574, 784, 1036
PpuMI	RGGWCCY	5 cut(s)	185, 395, 605, 815, 1013
Psp5II	RGGWCCY	5 cut(s)	185, 395, 605, 815, 1013
PspPPI	RGGWCCY	5 cut(s)	185, 395, 605, 815, 1013
RsaI	GTAC	2 cut(s)	807, 1005
RsaNI	GTAC	2 cut(s)	806, 1004
RseI	CAYNNNNRTG	4 cut(s)	258, 468, 678, 746
SaqAI	TTAA	8 cut(s)	63, 113, 266, 320, 476, 530, 686, 896
SatI	GCNGC	7 cut(s)	299, 332, 509, 542, 719, 752, 929
Sau3AI	GATC	1 cut(s)	889
SchI	GAGTC	5 cut(s)	155, 365, 575, 785, 1037
SetI	ASST	9 cut(s)	286, 496, 706, 733, 811, 916, 988, 1009, 1018
Sfr274I	CTCGAG	4 cut(s)	351, 561, 771, 1023
SgrAI	CRCCGGYG	4 cut(s)	208, 418, 628, 838
SinI	GGWCC	9 cut(s)	185, 284, 395, 494, 605, 704, 815, 914, 1013
SlaI	CTCGAG	4 cut(s)	351, 561, 771, 1023
SmiMI	CAYNNNNRTG	4 cut(s)	258, 468, 678, 746
SmlI	CTYRAG	9 cut(s)	112, 265, 351, 475, 561, 685, 771, 895, 1023
SmoI	CTYRAG	9 cut(s)	112, 265, 351, 475, 561, 685, 771, 895, 1023
Sse9I	AATT	2 cut(s)	97, 979
SsiI	CCGC	3 cut(s)	332, 542, 938
StyI	CCWWGG	1 cut(s)	673
TaaI	ACNGT	3 cut(s)	156, 366, 786
TaqI	TCGA	9 cut(s)	222, 352, 432, 562, 642, 772, 852, 951, 1024
TasI	AATT	2 cut(s)	97, 979
TauI	GCSGC	2 cut(s)	334, 544
TfiI	GAWTC	8 cut(s)	136, 289, 346, 499, 556, 709, 766, 919
Tru1I	TTAA	8 cut(s)	63, 113, 266, 320, 476, 530, 686, 896
Tru9I	TTAA	8 cut(s)	63, 113, 266, 320, 476, 530, 686, 896
TscAI	CASTG	2 cut(s)	315, 525
TseFI	GTSAC	4 cut(s)	201, 411, 621, 831
TseI	GCWGC	5 cut(s)	298, 508, 718, 751, 928
Tsp45I	GTSAC	4 cut(s)	201, 411, 621, 831
TspDTI	ATGAA	5 cut(s)	17, 234, 444, 654, 864
TspGWI	ACGGA	2 cut(s)	564, 1035
TspRI	CASTG	2 cut(s)	315, 525
Vha464I	CTTAAG	5 cut(s)	112, 265, 475, 685, 895
VpaK11BI	GGWCC	9 cut(s)	185, 284, 395, 494, 605, 704, 815, 914, 1013
XagI	CCTNNNNNAGG	1 cut(s)	726
XhoI	CTCGAG	4 cut(s)	351, 561, 771, 1023
XmnI	GAANNNNTTC	2 cut(s)	638, 947

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.