Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0009176

Physical Location & Seq

Genomic Coordinates Reverse (-)

9529501 .. 9531571

Gene Structure 2071 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g11210.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGATGACACAAACAATCAAGTGGCATGAAGGAGTCGTGCATGGCTGTGCCTCATTCCCATCCTCTGCTATTCCAATCTTCAACACCAGGAAGAAAATTGAGGTGATAAAGGTAACTTCAAAAGCAACGAAGTTTATAAGTTCAGAGTCAAATGGAAATAAAGTAGCAAATTTGTGTGCTGCGAAGACGGAAAGAATTAAGCTGCCAAATTACGATGTCGGAAGCAAGAGTTTCCACATCGGTGAGTTTTTGAGCCACCAATCAGGAATTGAAGCCATGCTCAACACCAGAGCCTTGGAAAGTTTTCAATCCCTTGATGCTGATATTTACAGGTGCACTCTGCCAAAACTTAAGCTTTTGAATTTTGAAGCTGCTCCAGTTCTGGACTTGAGAGTAACCCCAACAAATGAAGATTGTATAGTTGAGATGCTTTCGTGCAGGTTTGAGGGTTCAGAAGCTGTGGAACGCCAAAACAGCCATTTTTCAGCATTCATGACTAATCACATGTCGTGGGACACGAACAACTCTGAATCGTTTTTGGAGGTTGATGTGAAGTTGCAACTCACACTTGAGATATATACACGCCCTTTTAATATGATGCCGGTATCAGCTGTTGAGCGTCCTGGAAATCTAATGATGCAAGCGTTGGTGGATCGGCTGGTGCCATTGCTTCTGCAGCAACTACTACAAGATTATGGAAAATGGATTGATGAACAGTTACAGGATGTCTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1997

Protein Analysis

245

Amino Acids

27.58

Weight (kDa)

5.72

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009176)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G31115 AT4G31115
fragaria_vesca	FvH4_4g12330
malus_domestica	MD08G1133200.v1.1
prunus_persica	Prupe.1G463100_v2.0.a1 Prupe.1G463100_v2.0.a1 Prupe.1G463100_v2.0.a1 Prupe.1G463100_v2.0.a1
pyrus_communis	pycom08g11210
rosa_chinensis	RchiOBHm_Chr4g0410411
rosa_laevigata	RLG00000008431
rosa_multiflora	Rmu_co8379347.1_g000001 Rmu_sc0002111.1_g000015
rosa_roxburghii	Rroxscaffold_5G00355220
rosa_rugosa	Rorug04G0102400 Rorug04G0102500 Rorug04G0102600
rosa_samantha	Rh4AG160500 Rh4BG159700 Rh4CG172600 Rh4DG155400
rosa_wichuraiana	Rw4G013380

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	137
Acc36I	ACCTGC	1 cut(s)	429
AccB1I	GGYRCC	1 cut(s)	661
AclWI	GGATC	1 cut(s)	660
AcsI	RAATTY	2 cut(s)	169, 361
AflII	CTTAAG	1 cut(s)	350
AflIII	ACRYGT	1 cut(s)	504
AgsI	TTSAA	6 cut(s)	82, 120, 272, 308, 361, 368
AjnI	CCWGG	2 cut(s)	86, 622
AleI	CACNNNNGTG	1 cut(s)	240
AluBI	AGCT	5 cut(s)	202, 355, 371, 458, 611
AluI	AGCT	5 cut(s)	202, 355, 371, 458, 611
Alw21I	GWGCWC	1 cut(s)	338
Alw44I	GTGCAC	1 cut(s)	334
AlwI	GGATC	1 cut(s)	660
AlwNI	CAGNNNCTG	1 cut(s)	458
ApaLI	GTGCAC	1 cut(s)	334
ApeKI	GCWGC	4 cut(s)	179, 202, 371, 676
ApoI	RAATTY	2 cut(s)	169, 361
Asp700I	GAANNNNTTC	1 cut(s)	303
AsuHPI	GGTGA	2 cut(s)	115, 254
BaeGI	GKGCMC	1 cut(s)	338
BanI	GGYRCC	1 cut(s)	661
BbsI	GAAGAC	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	338
BbvI	GCAGC	4 cut(s)	166, 189, 358, 688
BccI	CCATC	1 cut(s)	67
BciT130I	CCWGG	2 cut(s)	88, 624
BfmI	CTRYAG	1 cut(s)	674
BfrI	CTTAAG	1 cut(s)	350
BfuAI	ACCTGC	1 cut(s)	429
BisI	GCNGC	4 cut(s)	180, 203, 372, 677
BlsI	GCNGC	4 cut(s)	181, 204, 373, 678
Bme1390I	CCNGG	2 cut(s)	88, 624
BmiI	GGNNCC	1 cut(s)	663
BmrFI	CCNGG	2 cut(s)	88, 624
BmsI	GCATC	4 cut(s)	307, 417, 588, 627
BpiI	GAAGAC	1 cut(s)	191
BpmI	CTGGAG	1 cut(s)	360
BpuEI	CTTGAG	2 cut(s)	409, 590
BsaJI	CCNNGG	1 cut(s)	294
Bse118I	RCCGGY	1 cut(s)	601
Bse1I	ACTGG	1 cut(s)	377
Bse3DI	GCAATG	1 cut(s)	665
BseBI	CCWGG	2 cut(s)	88, 624
BseDI	CCNNGG	1 cut(s)	294
BseGI	GGATG	2 cut(s)	59, 730
BseMI	GCAATG	1 cut(s)	665
BseNI	ACTGG	1 cut(s)	377
BseSI	GKGCMC	1 cut(s)	338
BseXI	GCAGC	4 cut(s)	166, 189, 358, 688
BsgI	GTGCAG	1 cut(s)	457
BshNI	GGYRCC	1 cut(s)	661
BsiHKAI	GWGCWC	1 cut(s)	338
BsiSI	CCGG	1 cut(s)	602
BslFI	GGGAC	1 cut(s)	527
BsmFI	GGGAC	1 cut(s)	527
BsmI	GAATGC	1 cut(s)	488
Bsp1286I	GDGCHC	1 cut(s)	338
Bsp143I	GATC	1 cut(s)	652
BspHI	TCATGA	1 cut(s)	492
BspLI	GGNNCC	1 cut(s)	663
BspMAI	CTGCAG	1 cut(s)	678
BspMI	ACCTGC	1 cut(s)	429
BspPI	GGATC	1 cut(s)	660
BspT107I	GGYRCC	1 cut(s)	661
BspTI	CTTAAG	1 cut(s)	350
BsrDI	GCAATG	1 cut(s)	665
BsrFI	RCCGGY	1 cut(s)	601
BsrI	ACTGG	1 cut(s)	377
BssAI	RCCGGY	1 cut(s)	601
BssECI	CCNNGG	1 cut(s)	294
BssMI	GATC	1 cut(s)	652
BssT1I	CCWWGG	1 cut(s)	294
Bst2UI	CCWGG	2 cut(s)	88, 624
Bst4CI	ACNGT	1 cut(s)	717
BstAFI	CTTAAG	1 cut(s)	350
BstC8I	GCNNGC	1 cut(s)	642
BstF5I	GGATG	2 cut(s)	59, 730
BstKTI	GATC	1 cut(s)	655
BstMBI	GATC	1 cut(s)	652
BstMWI	GCNNNNNNNGC	2 cut(s)	474, 676
BstNI	CCWGG	2 cut(s)	88, 624
BstNSI	RCATGY	1 cut(s)	508
BstSCI	CCNGG	2 cut(s)	86, 622
BstSFI	CTRYAG	1 cut(s)	674
BstSLI	GKGCMC	1 cut(s)	338
BstV1I	GCAGC	4 cut(s)	166, 189, 358, 688
BstV2I	GAAGAC	1 cut(s)	191
BstXI	CCANNNNNNTGG	1 cut(s)	295
BtsCI	GGATG	2 cut(s)	59, 730
BveI	ACCTGC	1 cut(s)	429
Cac8I	GCNNGC	1 cut(s)	642
CaiI	CAGNNNCTG	1 cut(s)	458
CciI	TCATGA	1 cut(s)	492
Cfr10I	RCCGGY	1 cut(s)	601
CseI	GACGC	1 cut(s)	608
CviAII	CATG	5 cut(s)	26, 41, 277, 493, 505
DpnI	GATC	1 cut(s)	654
DpnII	GATC	1 cut(s)	652
Eco130I	CCWWGG	1 cut(s)	294
EcoRII	CCWGG	2 cut(s)	86, 622
EcoT14I	CCWWGG	1 cut(s)	294
ErhI	CCWWGG	1 cut(s)	294
FaeI	CATG	5 cut(s)	29, 44, 280, 496, 508
FaqI	GGGAC	1 cut(s)	527
FatI	CATG	5 cut(s)	25, 40, 276, 492, 504
Fnu4HI	GCNGC	4 cut(s)	180, 203, 372, 677
FokI	GGATG	1 cut(s)	46
Fsp4HI	GCNGC	4 cut(s)	180, 203, 372, 677
GluI	GCNGC	4 cut(s)	180, 203, 372, 677
GsuI	CTGGAG	1 cut(s)	360
HapII	CCGG	1 cut(s)	602
HgaI	GACGC	1 cut(s)	608
Hin1II	CATG	5 cut(s)	29, 44, 280, 496, 508
HindIII	AAGCTT	1 cut(s)	353
HinfI	GANTC	3 cut(s)	33, 146, 530
HpaII	CCGG	1 cut(s)	602
HphI	GGTGA	2 cut(s)	115, 254
Hpy166II	GTNNAC	1 cut(s)	336
Hpy188I	TCNGA	4 cut(s)	145, 221, 454, 529
Hpy188III	TCNNGA	3 cut(s)	264, 383, 493
Hpy8I	GTNNAC	1 cut(s)	336
HpyAV	CCTTC	1 cut(s)	23
HpyCH4III	ACNGT	1 cut(s)	717
HpyCH4V	TGCA	6 cut(s)	40, 336, 438, 559, 640, 676
HpyF10VI	GCNNNNNNNGC	2 cut(s)	474, 676
Hsp92II	CATG	5 cut(s)	29, 44, 280, 496, 508
Kzo9I	GATC	1 cut(s)	652
LmnI	GCTCC	1 cut(s)	379
Lsp1109I	GCAGC	4 cut(s)	166, 189, 358, 688
LweI	GCATC	4 cut(s)	307, 417, 588, 627
MaeIII	GTNAC	3 cut(s)	112, 394, 717
MalI	GATC	1 cut(s)	654
MboI	GATC	1 cut(s)	652
MboII	GAAGA	4 cut(s)	70, 103, 196, 422
MhlI	GDGCHC	1 cut(s)	338
MluCI	AATT	6 cut(s)	96, 169, 195, 208, 267, 361
MlyI	GAGTC	2 cut(s)	42, 155
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	5 cut(s)	61, 73, 94, 439, 535
MroXI	GAANNNNTTC	1 cut(s)	303
MseI	TTAA	3 cut(s)	198, 351, 591
MslI	CAYNNNNRTG	2 cut(s)	45, 240
MspA1I	CMGCKG	1 cut(s)	611
MspCI	CTTAAG	1 cut(s)	350
MspI	CCGG	1 cut(s)	602
MspR9I	CCNGG	2 cut(s)	88, 624
Mva1269I	GAATGC	1 cut(s)	488
MvaI	CCWGG	2 cut(s)	88, 624
MwoI	GCNNNNNNNGC	2 cut(s)	474, 676
NdeII	GATC	1 cut(s)	652
NlaIII	CATG	5 cut(s)	29, 44, 280, 496, 508
NlaIV	GGNNCC	1 cut(s)	663
NspI	RCATGY	1 cut(s)	508
OliI	CACNNNNGTG	1 cut(s)	240
PagI	TCATGA	1 cut(s)	492
PciI	ACATGT	1 cut(s)	504
PcsI	WCGNNNNNNNCGW	1 cut(s)	515
PctI	GAATGC	1 cut(s)	488
PdmI	GAANNNNTTC	1 cut(s)	303
PfeI	GAWTC	1 cut(s)	530
PfoI	TCCNGGA	1 cut(s)	622
PkrI	GCNGC	4 cut(s)	181, 204, 373, 678
PleI	GAGTC	2 cut(s)	41, 154
PpsI	GAGTC	2 cut(s)	41, 154
PscI	ACATGT	1 cut(s)	504
PsiI	TTATAA	1 cut(s)	137
Psp6I	CCWGG	2 cut(s)	86, 622
PspGI	CCWGG	2 cut(s)	86, 622
PspN4I	GGNNCC	1 cut(s)	663
PstI	CTGCAG	1 cut(s)	678
PstNI	CAGNNNCTG	1 cut(s)	458
PvuII	CAGCTG	1 cut(s)	611
RseI	CAYNNNNRTG	2 cut(s)	45, 240
SaqAI	TTAA	3 cut(s)	198, 351, 591
SatI	GCNGC	4 cut(s)	180, 203, 372, 677
Sau3AI	GATC	1 cut(s)	652
SchI	GAGTC	2 cut(s)	42, 155
ScrFI	CCNGG	2 cut(s)	88, 624
SduI	GDGCHC	1 cut(s)	338
SfaNI	GCATC	4 cut(s)	307, 417, 588, 627
SfcI	CTRYAG	1 cut(s)	674
SmiMI	CAYNNNNRTG	2 cut(s)	45, 240
SmlI	CTYRAG	3 cut(s)	350, 388, 569
SmoI	CTYRAG	3 cut(s)	350, 388, 569
Sse9I	AATT	6 cut(s)	96, 169, 195, 208, 267, 361
StyD4I	CCNGG	2 cut(s)	86, 622
StyI	CCWWGG	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	717
TasI	AATT	6 cut(s)	96, 169, 195, 208, 267, 361
TfiI	GAWTC	1 cut(s)	530
Tru1I	TTAA	3 cut(s)	198, 351, 591
Tru9I	TTAA	3 cut(s)	198, 351, 591
TseI	GCWGC	4 cut(s)	179, 202, 371, 676
TspDTI	ATGAA	4 cut(s)	42, 423, 481, 726
TspGWI	ACGGA	1 cut(s)	203
Vha464I	CTTAAG	1 cut(s)	350
VneI	GTGCAC	1 cut(s)	334
XapI	RAATTY	2 cut(s)	169, 361
XceI	RCATGY	1 cut(s)	508
XmnI	GAANNNNTTC	1 cut(s)	303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.