Rh4AG160500

Protein of unknown function (DUF1997)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0009176
Physical Location & Seq
Reverse (-)
40862886 .. 40863876
991 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG160500.1

Sequence Viewer

Length: 495 bp
ATGCCACTAAGTATCAAGTGGCATGAACAACTACATGGCTTTACTTCATTCCCATCCCCTGCTACTCCAATCTTCAATACCAGGAAGAAAGTTGAAGTGATAAGGGTGTTAGCTAAAGCAGCTAACTTGGGTTCTGAATCAAATGCAAAGAAAGCAAATTTGTGTGCTGCAAAGAAGGAAAGAATTAAGCTGCCAAGTTTTGATGGTAGCTTAGGGCGCAAGAATTTTCACATTAGAGAGTTTCTAAGCCACCCATCAGGAACTGAAGCCATGCTCAATACTAGAGCACTGGAAAATTTTGAACCCCTTAGCACTGATACTTACAGGTGCACTTTGCCAAAGCTTAAACTTTTGAATTTTGAAGCAGCCCCTGTGGTGGATTTAAGAGTGAACCCAACCAATGAGGATTGTATGGTTGAGATGCTCTCTTGCAAGTTTGAGGGTTCAGAATCTGTGGAACGCCAAAACAGCCGTTTTTCAGATTCAACTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1997

Protein Analysis

164

Amino Acids

18.4

Weight (kDa)

8.95

Isoelectric Point (pI)

38.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1997 PF09366 78 - 160 5.9e-16 Protein of unknown function (DUF1997)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 4 cut(s) 157, 223, 295, 355
AcuI CTGAAG 1 cut(s) 285
AfiI CCNNNNNNNGG 1 cut(s) 376
AgsI TTSAA 6 cut(s) 76, 95, 302, 355, 362, 486
AjnI CCWGG 1 cut(s) 80
AluBI AGCT 5 cut(s) 113, 122, 190, 210, 343
AluI AGCT 5 cut(s) 113, 122, 190, 210, 343
Alw21I GWGCWC 2 cut(s) 289, 332
Alw44I GTGCAC 1 cut(s) 328
AlwNI CAGNNNCTG 3 cut(s) 263, 371, 452
ApaLI GTGCAC 1 cut(s) 328
ApeKI GCWGC 4 cut(s) 119, 167, 190, 365
ApoI RAATTY 4 cut(s) 157, 223, 295, 355
AspLEI GCGC 1 cut(s) 219
BaeGI GKGCMC 1 cut(s) 332
Bbv12I GWGCWC 2 cut(s) 289, 332
BbvI GCAGC 4 cut(s) 131, 154, 177, 377
BccI CCATC 3 cut(s) 61, 197, 262
BceAI ACGGC 1 cut(s) 456
BciT130I CCWGG 1 cut(s) 82
BfaI CTAG 1 cut(s) 282
BisI GCNGC 4 cut(s) 120, 168, 191, 366
BlsI GCNGC 4 cut(s) 121, 169, 192, 367
Bme1390I CCNGG 1 cut(s) 82
BmrFI CCNGG 1 cut(s) 82
BmsI GCATC 1 cut(s) 411
BplI GAGNNNNNCTC 2 cut(s) 410, 442
Bpu10I CCTNAGC 2 cut(s) 211, 308
Bsc4I CCNNNNNNNGG 1 cut(s) 376
Bse1I ACTGG 1 cut(s) 294
BseBI CCWGG 1 cut(s) 82
BseGI GGATG 1 cut(s) 53
BseLI CCNNNNNNNGG 1 cut(s) 376
BseNI ACTGG 1 cut(s) 294
BseSI GKGCMC 1 cut(s) 332
BseXI GCAGC 4 cut(s) 131, 154, 177, 377
BsiHKAI GWGCWC 2 cut(s) 289, 332
BslI CCNNNNNNNGG 1 cut(s) 376
Bsp1286I GDGCHC 2 cut(s) 289, 332
BsrI ACTGG 1 cut(s) 294
Bst2UI CCWGG 1 cut(s) 82
BstDEI CTNAG 4 cut(s) 8, 211, 245, 308
BstF5I GGATG 1 cut(s) 53
BstHHI GCGC 1 cut(s) 219
BstMWI GCNNNNNNNGC 4 cut(s) 119, 152, 216, 468
BstNI CCWGG 1 cut(s) 82
BstSCI CCNGG 1 cut(s) 80
BstSLI GKGCMC 1 cut(s) 332
BstV1I GCAGC 4 cut(s) 131, 154, 177, 377
BtsCI GGATG 1 cut(s) 53
BtsIMutI CAGTG 2 cut(s) 287, 312
CaiI CAGNNNCTG 3 cut(s) 263, 371, 452
CfoI GCGC 1 cut(s) 219
CviAII CATG 3 cut(s) 23, 35, 271
DdeI CTNAG 4 cut(s) 8, 211, 245, 308
Eco57I CTGAAG 1 cut(s) 285
EcoRII CCWGG 1 cut(s) 80
FaeI CATG 3 cut(s) 26, 38, 274
FaiI YATR 4 cut(s) 24, 36, 272, 413
FatI CATG 3 cut(s) 22, 34, 270
Fnu4HI GCNGC 4 cut(s) 120, 168, 191, 366
FokI GGATG 1 cut(s) 40
Fsp4HI GCNGC 4 cut(s) 120, 168, 191, 366
FspBI CTAG 1 cut(s) 282
GlaI GCGC 1 cut(s) 218
GluI GCNGC 4 cut(s) 120, 168, 191, 366
HhaI GCGC 1 cut(s) 219
Hin1II CATG 3 cut(s) 26, 38, 274
Hin6I GCGC 1 cut(s) 217
HinP1I GCGC 1 cut(s) 217
HindIII AAGCTT 1 cut(s) 341
HinfI GANTC 3 cut(s) 137, 449, 482
Hpy166II GTNNAC 2 cut(s) 330, 391
Hpy188I TCNGA 3 cut(s) 136, 448, 481
Hpy188III TCNNGA 1 cut(s) 258
Hpy8I GTNNAC 2 cut(s) 330, 391
HpyAV CCTTC 1 cut(s) 169
HpyCH4V TGCA 4 cut(s) 146, 170, 330, 432
HpyF10VI GCNNNNNNNGC 4 cut(s) 119, 152, 216, 468
HpyF3I CTNAG 4 cut(s) 8, 211, 245, 308
Hsp92II CATG 3 cut(s) 26, 38, 274
HspAI GCGC 1 cut(s) 217
LpnPI CCDG 7 cut(s) 67, 72, 94, 243, 275, 310, 384
Lsp1109I GCAGC 4 cut(s) 131, 154, 177, 377
LweI GCATC 1 cut(s) 411
MaeI CTAG 1 cut(s) 282
MboII GAAGA 2 cut(s) 64, 97
MhlI GDGCHC 2 cut(s) 289, 332
MluCI AATT 5 cut(s) 157, 183, 223, 295, 355
MnlI CCTC 2 cut(s) 397, 433
MseI TTAA 3 cut(s) 186, 345, 383
MspR9I CCNGG 1 cut(s) 82
MvaI CCWGG 1 cut(s) 82
MwoI GCNNNNNNNGC 4 cut(s) 119, 152, 216, 468
NlaIII CATG 3 cut(s) 26, 38, 274
PfeI GAWTC 3 cut(s) 137, 449, 482
PkrI GCNGC 4 cut(s) 121, 169, 192, 367
Psp6I CCWGG 1 cut(s) 80
PspGI CCWGG 1 cut(s) 80
PstNI CAGNNNCTG 3 cut(s) 263, 371, 452
SaqAI TTAA 3 cut(s) 186, 345, 383
SatI GCNGC 4 cut(s) 120, 168, 191, 366
ScrFI CCNGG 1 cut(s) 82
SduI GDGCHC 2 cut(s) 289, 332
SetI ASST 6 cut(s) 115, 124, 192, 212, 329, 345
SfaNI GCATC 1 cut(s) 411
Sse9I AATT 5 cut(s) 157, 183, 223, 295, 355
SspMI CTAG 1 cut(s) 282
StyD4I CCNGG 1 cut(s) 80
TasI AATT 5 cut(s) 157, 183, 223, 295, 355
TfiI GAWTC 3 cut(s) 137, 449, 482
Tru1I TTAA 3 cut(s) 186, 345, 383
Tru9I TTAA 3 cut(s) 186, 345, 383
TscAI CASTG 2 cut(s) 294, 319
TseI GCWGC 4 cut(s) 119, 167, 190, 365
TspDTI ATGAA 2 cut(s) 36, 39
TspRI CASTG 2 cut(s) 294, 319
VneI GTGCAC 1 cut(s) 328
XapI RAATTY 4 cut(s) 157, 223, 295, 355
XspI CTAG 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.